National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   540                                        
?                                            
A   21                                 1 1    
C   3                                        
D   27     1                                  
E   54     1 1                                
F   15                                        
G   66   1       1                       1    
H   21             1                         3
I   9                                        
K   27                                        
L   63         1         3                    
M   9                                        
N   18                               1        
P   24                                        
Q   21                                        
R   30   2                         1          
S   30           1                            
T   21               1                        
V   63     1   1           1             8    
W   3                                        
Y   15   1                                   1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Norway 266 A 1272 1272
1 Norway 267 T 1272 1272
2 Norway 268 G 1272 1272
3 Norway 269 G 1272 1272
4 Norway 270 A 1272 1272
5 Norway 271 G 1272 1272
6 Norway 272 A 1272 1272
7 Norway 273 G 1272 1272
8 Norway 274 C 1272 1272
9 Norway 275 C 1272 1272
10 Norway 276 T 1272 1272
11 Norway 277 T 1272 1272
12 Norway 278 G 1272 1272
13 Norway 279 T A 1272 1271 Val5Asp
14 Norway 280 C 1272 1272
15 Norway 281 C 1272 1272
16 Norway 282 C 1272 1272
17 Norway 283 T 1272 1272
18 Norway 284 G 1272 1272
19 Norway 285 G 1272 1272
20 Norway 286 T 1272 1272
21 Norway 287 T 1272 1272
22 Norway 288 T 1272 1272
23 Norway 289 C 1272 1272
24 Norway 290 A 1272 1272
25 Norway 291 A 1272 1272
26 Norway 292 C 1272 1272
27 Norway 293 G 1272 1272
28 Norway 294 A 1272 1272
29 Norway 295 G 1272 1272
30 Norway 296 A 1272 1272
31 Norway 297 A 1272 1272
32 Norway 298 A 1272 1272
33 Norway 299 A 1272 1272
34 Norway 300 C 1272 1272
35 Norway 301 A 1272 1272
36 Norway 302 C 1272 1272
37 Norway 303 A 1272 1272
38 Norway 304 C 1272 1272
39 Norway 305 G 1272 1272
40 Norway 306 T 1272 1272
41 Norway 307 C 1272 1272
42 Norway 308 C 1272 1272
43 Norway 309 A 1272 1272
44 Norway 310 A 1272 1272
45 Norway 311 C 1272 1272
46 Norway 312 T 1272 1272
47 Norway 313 C T 1272 1263 Leu16Leu
48 Norway 314 A 1272 1272
49 Norway 315 G 1272 1271
50 Norway 316 T 1272 1271
51 Norway 317 T 1272 1271
52 Norway 318 T 1272 1271
53 Norway 319 G 1272 1271
54 Norway 320 C 1272 1271
55 Norway 321 C 1272 1271
56 Norway 322 T 1272 1271
57 Norway 323 G 1272 1271
58 Norway 324 T 1272 1271
59 Norway 325 T 1272 1271
60 Norway 326 T 1272 1271
61 Norway 327 T 1272 1271
62 Norway 328 A 1272 1271
63 Norway 329 C 1272 1271
64 Norway 330 A 1272 1265
65 Norway 331 G 1272 1265
66 Norway 332 G 1272 1265
67 Norway 333 T 1272 1265
68 Norway 334 T 1272 1265
69 Norway 335 C T 1272 1262 Arg24Cys
70 Norway 336 G 1272 1265
71 Norway 337 C T 1272 1251 Arg24Arg
72 Norway 338 G 1272 1265
73 Norway 339 A 1272 1265
74 Norway 340 C 1272 1265
75 Norway 341 G 1272 1265
76 Norway 342 T 1272 1265
77 Norway 343 G T 1279 1277 Val26Val
78 Norway 344 C T 1279 1278 Leu27Phe
79 Norway 345 T 1279 1279
80 Norway 346 C T 1279 1276 Leu27Leu
81 Norway 347 G 1279 1279
82 Norway 348 T 1279 1279
83 Norway 349 A 1279 1279
84 Norway 350 C 1279 1279
85 Norway 351 G 1279 1279
86 Norway 352 T 1279 1279
87 Norway 353 G 1279 1279
88 Norway 354 G T 1279 1278 Gly30Val
89 Norway 355 C 1279 1279
90 Norway 356 T 1279 1279
91 Norway 357 T 1279 1279
92 Norway 358 T 1279 1279
93 Norway 359 G 1279 1279
94 Norway 360 G 1279 1279
95 Norway 361 A 1279 1279
96 Norway 362 G 1279 1279
97 Norway 363 A 1279 1279
98 Norway 364 C 1279 1279
99 Norway 365 T 1279 1279
100 Norway 366 C 1279 1279
101 Norway 367 C 1279 1279
102 Norway 368 G 1279 1279
103 Norway 369 T 1279 1279
104 Norway 370 G T 1279 1278 Val35Val
105 Norway 371 G 1279 1279
106 Norway 372 A 1279 1279
107 Norway 373 G 1279 1279
108 Norway 374 G 1279 1279
109 Norway 375 A 1279 1279
110 Norway 376 G T 1279 1207 Glu37Asp
111 Norway 377 G 1279 1279
112 Norway 378 T 1279 1279
113 Norway 379 C 1279 1279
114 Norway 380 T 1279 1279
115 Norway 381 T 1279 1279
116 Norway 382 A 1279 1279
117 Norway 383 T 1279 1279
118 Norway 384 C 1279 1279
119 Norway 385 A 1279 1279
120 Norway 386 G 1279 1279
121 Norway 387 A 1279 1279
122 Norway 388 G 1279 1279
123 Norway 389 G 1279 1279
124 Norway 390 C 1279 1279
125 Norway 391 A 1279 1279
126 Norway 392 C 1279 1279
127 Norway 393 G 1279 1279
128 Norway 394 T 1279 1279
129 Norway 395 C 1279 1279
130 Norway 396 A 1279 1279
131 Norway 397 A 1279 1279
132 Norway 398 C 1279 1279
133 Norway 399 A 1279 1279
134 Norway 400 T 1279 1279
135 Norway 401 C 1279 1279
136 Norway 402 T 1279 1279
137 Norway 403 T 1278 1278
138 Norway 404 A 1278 1278
139 Norway 405 A 1278 1278
140 Norway 406 A 1278 1278
141 Norway 407 G 1278 1278
142 Norway 408 A 1278 1278
143 Norway 409 T 1278 1278
144 Norway 410 G 1278 1278
145 Norway 411 G 1278 1278
146 Norway 412 C 1278 1278
147 Norway 413 A 1278 1278
148 Norway 414 C 1278 1278
149 Norway 415 T 1278 1278
150 Norway 416 T 1278 1278
151 Norway 417 G 1278 1278
152 Norway 418 T 1278 1278
153 Norway 419 G 1278 1278
154 Norway 420 G 1278 1278
155 Norway 421 C 1278 1278
156 Norway 422 T 1278 1278
157 Norway 423 T 1278 1278
158 Norway 424 A 1278 1278
159 Norway 425 G 1278 1278
160 Norway 426 T 1278 1278
161 Norway 427 A 1278 1278
162 Norway 428 G 1278 1278
163 Norway 429 A 1278 1278
164 Norway 430 A 1278 1278
165 Norway 431 G 1278 1278
166 Norway 432 T 1278 1278
167 Norway 433 T C 1278 1277 Val56Val
168 Norway 434 G 1278 1278
169 Norway 435 A 1278 1278
170 Norway 436 A 1278 1278
171 Norway 437 A 1278 1278
172 Norway 438 A 1278 1278
173 Norway 439 A 1278 1278
174 Norway 440 G 1278 1278
175 Norway 441 G 1278 1278
176 Norway 442 C 1278 1278
177 Norway 443 G 1278 1278
178 Norway 444 T 1278 1278
179 Norway 445 T C 1278 1074 Val60Val
180 Norway 446 T 1278 1278
181 Norway 447 T 1278 1278
182 Norway 448 G 1278 1278
183 Norway 449 C 1278 1278
184 Norway 450 C 1278 1278
185 Norway 451 T 1278 1278
186 Norway 452 C 1278 1278
187 Norway 453 A 1278 1278
188 Norway 454 A 1278 1278
189 Norway 455 C 1278 1278
190 Norway 456 T 1278 1278
191 Norway 457 T 1278 1278
192 Norway 458 G 1278 1278
193 Norway 459 A 1278 1278
194 Norway 460 A 1278 1278
195 Norway 461 C 1278 1278
196 Norway 462 A 1278 1278
197 Norway 463 G 1279 1279
198 Norway 464 C 1279 1279
199 Norway 465 C 1279 1279
200 Norway 466 C 1279 1279
201 Norway 467 T 1279 1279
202 Norway 468 A 1279 1279
203 Norway 469 T C 1279 1277 Tyr68Tyr
204 Norway 470 G 1279 1279
205 Norway 471 T 1279 1279
206 Norway 472 G 1279 1279
207 Norway 473 T 1279 1279
208 Norway 474 T 1279 1279
209 Norway 475 C 1279 1279
210 Norway 476 A 1279 1279
211 Norway 477 T 1279 1279
212 Norway 478 C 1279 1279
213 Norway 479 A 1279 1279
214 Norway 480 A 1279 1279
215 Norway 481 A 1279 1279
216 Norway 482 C 1279 1279
217 Norway 483 G 1279 1279
218 Norway 484 T 1279 1279
219 Norway 485 T 1279 1279
220 Norway 486 C 1279 1279
221 Norway 487 G 1279 1279
222 Norway 488 G 1279 1279
223 Norway 489 A 1279 1279
224 Norway 490 T 1279 1279
225 Norway 491 G 1279 1279
226 Norway 492 C 1279 1279
227 Norway 493 T 1279 1279
228 Norway 494 C 1279 1279
229 Norway 495 G 1279 1279
230 Norway 496 A 1279 1279
231 Norway 497 A 1279 1279
232 Norway 498 C T 1279 1278 Thr78Ile
233 Norway 499 T 1279 1279
234 Norway 500 G 1279 1279
235 Norway 501 C 1279 1279
236 Norway 502 A 1279 1279
237 Norway 503 C 1279 1279
238 Norway 504 C 1279 1279
239 Norway 505 T 1278 1278
240 Norway 506 C T 1278 1277 His81Tyr
241 Norway 507 A 1278 1278
242 Norway 508 T 1278 1278
243 Norway 509 G 1278 1278
244 Norway 510 G 1278 1278
245 Norway 511 T 1278 1278
246 Norway 512 C T 1278 1277 His83Tyr
247 Norway 513 A 1278 1278
248 Norway 514 T C 1278 1277 His83His
249 Norway 515 G 1278 1278
250 Norway 516 T 1278 1278
251 Norway 517 T 1278 1278
252 Norway 518 A 1278 1278
253 Norway 519 T 1278 1278
254 Norway 520 G 1278 1278
255 Norway 521 G T 1278 1277 Val86Phe
256 Norway 522 T 1278 1278
257 Norway 523 T 1278 1278
258 Norway 524 G 1278 1278
259 Norway 525 A 1278 1278
260 Norway 526 G 1278 1278
261 Norway 527 C 1278 1278
262 Norway 528 T 1278 1278
263 Norway 529 G A 1278 1276 Leu88Leu
264 Norway 530 G 1278 1278
265 Norway 531 T 1278 1278
266 Norway 532 A 1278 1278
267 Norway 533 G 1278 1278
268 Norway 534 C 1278 1278
269 Norway 535 A 1278 1278
270 Norway 536 G 1278 1278
271 Norway 537 A 1278 1278
272 Norway 538 A 1278 1278
273 Norway 539 C 1278 1278
274 Norway 540 T 1278 1278
275 Norway 541 C 1278 1278
276 Norway 542 G 1278 1278
277 Norway 543 A 1278 1278
278 Norway 544 A 1278 1278
279 Norway 545 G 1278 1278
280 Norway 546 G 1278 1278
281 Norway 547 C 1278 1278
282 Norway 548 A 1278 1278
283 Norway 549 T 1278 1278
284 Norway 550 T 1278 1278
285 Norway 551 C 1278 1278
286 Norway 552 A 1278 1278
287 Norway 553 G 1278 1278
288 Norway 554 T 1278 1278
289 Norway 555 A 1278 1278
290 Norway 556 C 1278 1278
291 Norway 557 G 1278 1278
292 Norway 558 G 1278 1278
293 Norway 559 T 1278 1278
294 Norway 560 C T 1278 1277 Arg99Cys
295 Norway 561 G 1278 1278
296 Norway 562 T 1278 1278
297 Norway 563 A 1278 1278
298 Norway 564 G 1278 1278
299 Norway 565 T 1279 1279
300 Norway 566 G 1279 1279
301 Norway 567 G 1279 1279
302 Norway 568 T 1279 1279
303 Norway 569 G 1279 1279
304 Norway 570 A 1279 1279
305 Norway 571 G 1279 1279
306 Norway 572 A 1279 1279
307 Norway 573 C 1279 1279
308 Norway 574 A 1279 1279
309 Norway 575 C 1279 1279
310 Norway 576 T 1279 1279
311 Norway 577 T 1279 1279
312 Norway 578 G 1279 1279
313 Norway 579 G 1279 1279
314 Norway 580 T 1279 1279
315 Norway 581 G 1279 1279
316 Norway 582 T 1279 1279
317 Norway 583 C T 1279 1278 Val106Val
318 Norway 584 C 1279 1279
319 Norway 585 T 1279 1279
320 Norway 586 T 1279 1279
321 Norway 587 G 1279 1279
322 Norway 588 T 1279 1279
323 Norway 589 C T 1279 1271 Val108Val
324 Norway 590 C 1279 1279
325 Norway 591 C 1279 1279
326 Norway 592 T 1279 1279
327 Norway 593 C T 1279 1277 His110Tyr
328 Norway 594 A 1279 1279
329 Norway 595 T 1279 1279
330 Norway 596 G 1279 1279
331 Norway 597 T 1279 1279
332 Norway 598 G A 1279 1278 Val111Val
333 Norway 599 G T 1279 1278 Gly112Cys
334 Norway 600 G 1279 1279
335 Norway 601 C 1279 1279
336 Norway 602 G 1279 1279
337 Norway 603 A 1279 1279
338 Norway 604 A G 1279 1272 Glu113Glu
339 Norway 605 A 1279 1279
340 Norway 606 T 1279 1279
341 Norway 607 A 1279 1279
342 Norway 608 C 1279 1279
343 Norway 609 C 1279 1279
344 Norway 610 A 1279 1279
345 Norway 611 G A 1279 1275 Val116Met
346 Norway 612 T 1279 1279
347 Norway 613 G 1279 1279
348 Norway 614 G 1279 1279
349 Norway 615 C T 1279 1278 Ala117Val
350 Norway 616 T 1279 1279
351 Norway 617 T 1279 1279
352 Norway 618 A G 1279 1278 Tyr118Cys
353 Norway 619 C 1279 1279
354 Norway 620 C 1279 1279
355 Norway 621 G 1279 1279
356 Norway 622 C 1279 1279
357 Norway 623 A 1279 1279
358 Norway 624 A 1279 1279
359 Norway 625 G 1279 1279
360 Norway 626 G 1278 1278
361 Norway 627 T 1278 1278
362 Norway 628 T 1278 1278
363 Norway 629 C 1278 1278
364 Norway 630 T 1278 1278
365 Norway 631 T 1278 1278
366 Norway 632 C 1278 1278
367 Norway 633 T 1278 1278
368 Norway 634 T 1278 1278
369 Norway 635 C 1278 1278
370 Norway 636 G 1278 1278
371 Norway 637 T 1278 1278
372 Norway 638 A 1278 1278
373 Norway 639 A 1278 1278
374 Norway 640 G 1278 1278
375 Norway 641 A 1278 1278
376 Norway 642 A G 1278 1276 Asn126Ser
377 Norway 643 C 1278 1278
378 Norway 644 G 1278 1278
379 Norway 645 G 1278 1278
380 Norway 646 T 1278 1278
381 Norway 647 A 1278 1278
382 Norway 648 A 1278 1278
383 Norway 649 T 1278 1278
384 Norway 650 A 1278 1278
385 Norway 651 A 1278 1278
386 Norway 652 A 1278 1278
387 Norway 653 G 1278 1278
388 Norway 654 G 1278 1278
389 Norway 655 A 1278 1278
390 Norway 656 G 1278 1278
391 Norway 657 C 1278 1278
392 Norway 658 T 1278 1278
393 Norway 659 G 1278 1278
394 Norway 660 G 1278 1278
395 Norway 661 T 1278 1278
396 Norway 662 G 1278 1278
397 Norway 663 G 1278 1278
398 Norway 664 C 1278 1278
399 Norway 665 C 1278 1278
400 Norway 666 A 1278 1278
401 Norway 667 T 1278 1278
402 Norway 668 A 1278 1278
403 Norway 669 G 1278 1278
404 Norway 670 T 1278 1278
405 Norway 671 T 1278 1278
406 Norway 672 A 1278 1278
407 Norway 673 C 1278 1278
408 Norway 674 G 1278 1278
409 Norway 675 G 1278 1278
410 Norway 676 C T 1278 1277 Gly137Gly
411 Norway 677 G A 1278 1276 Ala138Thr
412 Norway 678 C 1278 1278
413 Norway 679 C 1278 1278
414 Norway 680 G 1278 1278
415 Norway 681 A 1278 1278
416 Norway 682 T 1278 1278
417 Norway 683 C 1278 1278
418 Norway 684 T 1278 1278
419 Norway 685 A 1278 1277
420 Norway 686 A 1276 1275
421 Norway 687 A 1276 1275
422 Norway 688 G 1276 1276
423 Norway 689 T 1276 1275
424 Norway 690 C 1276 1275
425 Norway 691 A 1276 1275
426 Norway 692 T 1276 1276
427 Norway 693 T 1276 1276
428 Norway 694 T 1276 1276
429 Norway 695 G 1276 1276
430 Norway 696 A 1276 1276
431 Norway 697 C 1276 1276
432 Norway 698 T 1276 1276
433 Norway 699 T 1276 1276
434 Norway 700 A 1276 1276
435 Norway 701 G 1276 1276
436 Norway 702 G 1276 1276
437 Norway 703 C 1276 1276
438 Norway 704 G 1276 1276
439 Norway 705 A 1275 1275
440 Norway 706 C T 1275 1274 Asp147Asp
441 Norway 707 G 1275 1275
442 Norway 708 A 1275 1275
443 Norway 709 G 1275 1275
444 Norway 710 C 1275 1275
445 Norway 711 T 1275 1275
446 Norway 712 T 1275 1275
447 Norway 713 G 1275 1275
448 Norway 714 G 1275 1275
449 Norway 715 C 1275 1275
450 Norway 716 A 1275 1275
451 Norway 717 C 1275 1275
452 Norway 718 T 1275 1275
453 Norway 719 G 1275 1275
454 Norway 720 A 1275 1275
455 Norway 721 T 1275 1275
456 Norway 722 C 1275 1275
457 Norway 723 C 1275 1275
458 Norway 724 T 1275 1275
459 Norway 725 T 1275 1275
460 Norway 726 A 1275 1275
461 Norway 727 T 1275 1275
462 Norway 728 G 1275 1275
463 Norway 729 A 1275 1275
464 Norway 730 A 1275 1275
465 Norway 731 G 1275 1275
466 Norway 732 A 1275 1275
467 Norway 733 T 1275 1275
468 Norway 734 T 1275 1275
469 Norway 735 T 1275 1275
470 Norway 736 T 1275 1275
471 Norway 737 C 1275 1275
472 Norway 738 A 1275 1275
473 Norway 739 A 1275 1275
474 Norway 740 G 1275 1275
475 Norway 741 A 1275 1275
476 Norway 742 A 1275 1275
477 Norway 743 A 1275 1275
478 Norway 744 A 1275 1275
479 Norway 745 C 1275 1275
480 Norway 746 T 1278 1278
481 Norway 747 G 1278 1278
482 Norway 748 G 1278 1278
483 Norway 749 A 1278 1278
484 Norway 750 A 1278 1278
485 Norway 751 C 1278 1278
486 Norway 752 A 1278 1278
487 Norway 753 C 1278 1278
488 Norway 754 T 1278 1278
489 Norway 755 A 1278 1278
490 Norway 756 A 1278 1278
491 Norway 757 A 1278 1278
492 Norway 758 C 1278 1278
493 Norway 759 A 1278 1278
494 Norway 760 T 1278 1278
495 Norway 761 A G 1278 1276 Ser166Gly
496 Norway 762 G 1278 1278
497 Norway 763 C 1278 1278
498 Norway 764 A 1278 1278
499 Norway 765 G 1278 1278
500 Norway 766 T 1278 1278
501 Norway 767 G 1278 1278
502 Norway 768 G 1278 1278
503 Norway 769 T 1278 1278
504 Norway 770 G 1278 1278
505 Norway 771 T 1278 1278
506 Norway 772 T C 1278 1172 Val169Val
507 Norway 773 A 1278 1278
508 Norway 774 C 1278 1278
509 Norway 775 C 1278 1278
510 Norway 776 C 1278 1278
511 Norway 777 G 1278 1278
512 Norway 778 T 1278 1278
513 Norway 779 G 1278 1278
514 Norway 780 A 1278 1278
515 Norway 781 A 1278 1278
516 Norway 782 C 1278 1278
517 Norway 783 T 1278 1278
518 Norway 784 C 1278 1278
519 Norway 785 A 1278 1278
520 Norway 786 T 1278 1278
521 Norway 787 G 1278 1278
522 Norway 788 C 1278 1278
523 Norway 789 G 1278 1278
524 Norway 790 T 1278 1278
525 Norway 791 G 1278 1278
526 Norway 792 A 1278 1278
527 Norway 793 G 1278 1278
528 Norway 794 C 1278 1278
529 Norway 795 T 1278 1278
530 Norway 796 T 1278 1278
531 Norway 797 A 1278 1278
532 Norway 798 A 1278 1278
533 Norway 799 C 1278 1278
534 Norway 800 G 1278 1278
535 Norway 801 G 1278 1278
536 Norway 802 A 1278 1278
537 Norway 803 G 1278 1278
538 Norway 804 G 1278 1278
539 Norway 805 G 1277 1277