National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   540                                        
?                                            
A   21                                        
C   3                                        
D   27                                        
E   54                                        
F   15                                        
G   66                                        
H   21                                        
I   9                                        
K   27                                        
L   63                   1                    
M   9                                        
N   18                                        
P   24                                        
Q   21                                        
R   30                                        
S   30                                        
T   21                                        
V   63                                        
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Nepal 266 A 15 15
1 Nepal 267 T 15 15
2 Nepal 268 G 15 15
3 Nepal 269 G 15 15
4 Nepal 270 A 15 15
5 Nepal 271 G 15 15
6 Nepal 272 A 15 15
7 Nepal 273 G 15 15
8 Nepal 274 C 15 15
9 Nepal 275 C 15 15
10 Nepal 276 T 15 15
11 Nepal 277 T 15 15
12 Nepal 278 G 15 15
13 Nepal 279 T 15 15
14 Nepal 280 C 15 15
15 Nepal 281 C 15 15
16 Nepal 282 C 15 15
17 Nepal 283 T 15 15
18 Nepal 284 G 15 15
19 Nepal 285 G 15 15
20 Nepal 286 T 15 15
21 Nepal 287 T 15 15
22 Nepal 288 T 15 15
23 Nepal 289 C 15 15
24 Nepal 290 A 15 15
25 Nepal 291 A 15 15
26 Nepal 292 C 15 15
27 Nepal 293 G 15 15
28 Nepal 294 A 15 15
29 Nepal 295 G 15 15
30 Nepal 296 A 15 15
31 Nepal 297 A 15 15
32 Nepal 298 A 15 15
33 Nepal 299 A 15 15
34 Nepal 300 C 15 15
35 Nepal 301 A 15 15
36 Nepal 302 C 15 15
37 Nepal 303 A 15 15
38 Nepal 304 C 15 15
39 Nepal 305 G 15 15
40 Nepal 306 T 15 15
41 Nepal 307 C 15 15
42 Nepal 308 C 15 15
43 Nepal 309 A 15 15
44 Nepal 310 A 15 15
45 Nepal 311 C 15 15
46 Nepal 312 T 15 15
47 Nepal 313 C T 15 14 Leu16Leu
48 Nepal 314 A 15 15
49 Nepal 315 G 15 15
50 Nepal 316 T 15 15
51 Nepal 317 T 15 15
52 Nepal 318 T 15 15
53 Nepal 319 G 15 15
54 Nepal 320 C 15 15
55 Nepal 321 C 15 15
56 Nepal 322 T 15 15
57 Nepal 323 G 15 15
58 Nepal 324 T 15 15
59 Nepal 325 T 15 15
60 Nepal 326 T 15 15
61 Nepal 327 T 15 15
62 Nepal 328 A 15 15
63 Nepal 329 C 15 15
64 Nepal 330 A 15 15
65 Nepal 331 G 15 15
66 Nepal 332 G 15 15
67 Nepal 333 T 15 15
68 Nepal 334 T 15 15
69 Nepal 335 C 15 15
70 Nepal 336 G 15 15
71 Nepal 337 C 15 15
72 Nepal 338 G 15 15
73 Nepal 339 A 15 15
74 Nepal 340 C 15 15
75 Nepal 341 G 15 15
76 Nepal 342 T 15 15
77 Nepal 343 G 15 15
78 Nepal 344 C 15 15
79 Nepal 345 T 15 15
80 Nepal 346 C 15 15
81 Nepal 347 G 15 15
82 Nepal 348 T 15 15
83 Nepal 349 A 15 15
84 Nepal 350 C 15 15
85 Nepal 351 G 15 15
86 Nepal 352 T 15 15
87 Nepal 353 G 15 15
88 Nepal 354 G 15 15
89 Nepal 355 C 15 15
90 Nepal 356 T 15 15
91 Nepal 357 T 15 15
92 Nepal 358 T 15 15
93 Nepal 359 G 15 15
94 Nepal 360 G 15 15
95 Nepal 361 A 15 15
96 Nepal 362 G 15 15
97 Nepal 363 A 15 15
98 Nepal 364 C 15 15
99 Nepal 365 T 15 15
100 Nepal 366 C 15 15
101 Nepal 367 C 15 15
102 Nepal 368 G 15 15
103 Nepal 369 T 15 15
104 Nepal 370 G 15 15
105 Nepal 371 G 15 15
106 Nepal 372 A 15 15
107 Nepal 373 G 15 15
108 Nepal 374 G 15 15
109 Nepal 375 A 15 15
110 Nepal 376 G 15 15
111 Nepal 377 G 15 15
112 Nepal 378 T 15 15
113 Nepal 379 C 15 15
114 Nepal 380 T 15 15
115 Nepal 381 T 15 15
116 Nepal 382 A 15 15
117 Nepal 383 T 15 15
118 Nepal 384 C 15 15
119 Nepal 385 A 15 15
120 Nepal 386 G 15 15
121 Nepal 387 A 15 15
122 Nepal 388 G 15 15
123 Nepal 389 G 15 15
124 Nepal 390 C 15 15
125 Nepal 391 A 15 15
126 Nepal 392 C 15 15
127 Nepal 393 G 15 15
128 Nepal 394 T 15 15
129 Nepal 395 C 15 15
130 Nepal 396 A 15 15
131 Nepal 397 A 15 15
132 Nepal 398 C 15 15
133 Nepal 399 A 15 15
134 Nepal 400 T 15 15
135 Nepal 401 C 15 15
136 Nepal 402 T 15 15
137 Nepal 403 T 15 15
138 Nepal 404 A 15 15
139 Nepal 405 A 15 15
140 Nepal 406 A 15 15
141 Nepal 407 G 15 15
142 Nepal 408 A 15 15
143 Nepal 409 T 15 15
144 Nepal 410 G 15 15
145 Nepal 411 G 15 15
146 Nepal 412 C 15 15
147 Nepal 413 A 15 15
148 Nepal 414 C 15 15
149 Nepal 415 T 15 15
150 Nepal 416 T 15 15
151 Nepal 417 G 15 15
152 Nepal 418 T 15 15
153 Nepal 419 G 15 15
154 Nepal 420 G 15 15
155 Nepal 421 C 15 15
156 Nepal 422 T 15 15
157 Nepal 423 T 15 15
158 Nepal 424 A 15 15
159 Nepal 425 G 15 15
160 Nepal 426 T 15 15
161 Nepal 427 A 15 15
162 Nepal 428 G 15 15
163 Nepal 429 A 15 15
164 Nepal 430 A 15 15
165 Nepal 431 G 15 15
166 Nepal 432 T 15 15
167 Nepal 433 T 15 15
168 Nepal 434 G 15 15
169 Nepal 435 A 15 15
170 Nepal 436 A 15 15
171 Nepal 437 A 15 15
172 Nepal 438 A 15 15
173 Nepal 439 A 15 15
174 Nepal 440 G 15 15
175 Nepal 441 G 15 15
176 Nepal 442 C 15 15
177 Nepal 443 G 15 15
178 Nepal 444 T 15 15
179 Nepal 445 T 15 15
180 Nepal 446 T 15 15
181 Nepal 447 T 15 15
182 Nepal 448 G 15 15
183 Nepal 449 C 15 15
184 Nepal 450 C 15 15
185 Nepal 451 T 15 15
186 Nepal 452 C 15 15
187 Nepal 453 A 15 15
188 Nepal 454 A 15 15
189 Nepal 455 C 15 15
190 Nepal 456 T 15 15
191 Nepal 457 T 15 15
192 Nepal 458 G 15 15
193 Nepal 459 A 15 15
194 Nepal 460 A 15 15
195 Nepal 461 C 15 15
196 Nepal 462 A 15 15
197 Nepal 463 G 15 15
198 Nepal 464 C 15 15
199 Nepal 465 C 15 15
200 Nepal 466 C 15 15
201 Nepal 467 T 15 15
202 Nepal 468 A 15 15
203 Nepal 469 T 15 15
204 Nepal 470 G 15 15
205 Nepal 471 T 15 15
206 Nepal 472 G 15 15
207 Nepal 473 T 15 15
208 Nepal 474 T 15 15
209 Nepal 475 C 15 15
210 Nepal 476 A 15 15
211 Nepal 477 T 15 15
212 Nepal 478 C 15 15
213 Nepal 479 A 15 15
214 Nepal 480 A 15 15
215 Nepal 481 A 15 15
216 Nepal 482 C 15 15
217 Nepal 483 G 15 15
218 Nepal 484 T 15 15
219 Nepal 485 T 15 15
220 Nepal 486 C 15 15
221 Nepal 487 G 15 15
222 Nepal 488 G 15 15
223 Nepal 489 A 15 15
224 Nepal 490 T 15 15
225 Nepal 491 G 15 15
226 Nepal 492 C 15 15
227 Nepal 493 T 15 15
228 Nepal 494 C 15 15
229 Nepal 495 G 15 15
230 Nepal 496 A 15 15
231 Nepal 497 A 15 15
232 Nepal 498 C 15 15
233 Nepal 499 T 15 15
234 Nepal 500 G 15 15
235 Nepal 501 C 15 15
236 Nepal 502 A 15 15
237 Nepal 503 C 15 15
238 Nepal 504 C 15 15
239 Nepal 505 T 15 15
240 Nepal 506 C 15 15
241 Nepal 507 A 15 15
242 Nepal 508 T 15 15
243 Nepal 509 G 15 15
244 Nepal 510 G 15 15
245 Nepal 511 T 15 15
246 Nepal 512 C 15 15
247 Nepal 513 A 15 15
248 Nepal 514 T 15 15
249 Nepal 515 G 15 15
250 Nepal 516 T 15 15
251 Nepal 517 T 15 15
252 Nepal 518 A 15 15
253 Nepal 519 T 15 15
254 Nepal 520 G 15 15
255 Nepal 521 G 15 15
256 Nepal 522 T 15 15
257 Nepal 523 T 15 15
258 Nepal 524 G 15 15
259 Nepal 525 A 15 15
260 Nepal 526 G 15 15
261 Nepal 527 C 15 15
262 Nepal 528 T 15 15
263 Nepal 529 G 15 15
264 Nepal 530 G 15 15
265 Nepal 531 T 15 15
266 Nepal 532 A 15 15
267 Nepal 533 G 15 15
268 Nepal 534 C 15 15
269 Nepal 535 A 15 15
270 Nepal 536 G 15 15
271 Nepal 537 A 15 15
272 Nepal 538 A 15 15
273 Nepal 539 C 15 15
274 Nepal 540 T 15 15
275 Nepal 541 C 15 15
276 Nepal 542 G 15 15
277 Nepal 543 A 15 15
278 Nepal 544 A 15 15
279 Nepal 545 G 15 15
280 Nepal 546 G 15 15
281 Nepal 547 C 15 15
282 Nepal 548 A 15 15
283 Nepal 549 T 15 15
284 Nepal 550 T 15 15
285 Nepal 551 C 15 15
286 Nepal 552 A 15 15
287 Nepal 553 G 15 15
288 Nepal 554 T 15 15
289 Nepal 555 A 15 15
290 Nepal 556 C 15 15
291 Nepal 557 G 15 15
292 Nepal 558 G 15 15
293 Nepal 559 T 15 15
294 Nepal 560 C 15 15
295 Nepal 561 G 15 15
296 Nepal 562 T 15 15
297 Nepal 563 A 15 15
298 Nepal 564 G 15 15
299 Nepal 565 T 15 15
300 Nepal 566 G 15 15
301 Nepal 567 G 15 15
302 Nepal 568 T 15 15
303 Nepal 569 G 15 15
304 Nepal 570 A 15 15
305 Nepal 571 G 15 15
306 Nepal 572 A 15 15
307 Nepal 573 C 15 15
308 Nepal 574 A 15 15
309 Nepal 575 C 15 15
310 Nepal 576 T 15 15
311 Nepal 577 T 15 15
312 Nepal 578 G 15 15
313 Nepal 579 G 15 15
314 Nepal 580 T 15 15
315 Nepal 581 G 15 15
316 Nepal 582 T 15 15
317 Nepal 583 C 15 15
318 Nepal 584 C 15 15
319 Nepal 585 T 15 15
320 Nepal 586 T 15 15
321 Nepal 587 G 15 15
322 Nepal 588 T 15 15
323 Nepal 589 C 15 15
324 Nepal 590 C 15 15
325 Nepal 591 C 15 15
326 Nepal 592 T 15 15
327 Nepal 593 C 15 15
328 Nepal 594 A 15 15
329 Nepal 595 T 15 15
330 Nepal 596 G 15 15
331 Nepal 597 T 15 15
332 Nepal 598 G 15 15
333 Nepal 599 G 15 15
334 Nepal 600 G 15 15
335 Nepal 601 C 15 15
336 Nepal 602 G 15 15
337 Nepal 603 A 15 15
338 Nepal 604 A 15 15
339 Nepal 605 A 15 15
340 Nepal 606 T 15 15
341 Nepal 607 A 15 15
342 Nepal 608 C 15 15
343 Nepal 609 C 15 15
344 Nepal 610 A 15 15
345 Nepal 611 G 15 15
346 Nepal 612 T 15 15
347 Nepal 613 G 15 15
348 Nepal 614 G 15 15
349 Nepal 615 C 15 15
350 Nepal 616 T 15 15
351 Nepal 617 T 15 15
352 Nepal 618 A 15 15
353 Nepal 619 C 15 15
354 Nepal 620 C 15 15
355 Nepal 621 G 15 15
356 Nepal 622 C 15 15
357 Nepal 623 A 15 15
358 Nepal 624 A 15 15
359 Nepal 625 G 15 15
360 Nepal 626 G 15 15
361 Nepal 627 T 15 15
362 Nepal 628 T 15 15
363 Nepal 629 C 15 15
364 Nepal 630 T 15 15
365 Nepal 631 T 15 15
366 Nepal 632 C 15 15
367 Nepal 633 T 15 15
368 Nepal 634 T 15 15
369 Nepal 635 C 15 15
370 Nepal 636 G 15 15
371 Nepal 637 T 15 15
372 Nepal 638 A 15 15
373 Nepal 639 A 15 15
374 Nepal 640 G 15 15
375 Nepal 641 A 15 15
376 Nepal 642 A 15 15
377 Nepal 643 C 15 15
378 Nepal 644 G 15 15
379 Nepal 645 G 15 15
380 Nepal 646 T 15 15
381 Nepal 647 A 15 15
382 Nepal 648 A 15 15
383 Nepal 649 T 15 15
384 Nepal 650 A 15 15
385 Nepal 651 A 15 15
386 Nepal 652 A 15 15
387 Nepal 653 G 15 15
388 Nepal 654 G 15 15
389 Nepal 655 A 15 15
390 Nepal 656 G 15 15
391 Nepal 657 C 15 15
392 Nepal 658 T 15 15
393 Nepal 659 G 15 15
394 Nepal 660 G 15 15
395 Nepal 661 T 15 15
396 Nepal 662 G 15 15
397 Nepal 663 G 15 15
398 Nepal 664 C 15 15
399 Nepal 665 C 15 15
400 Nepal 666 A 15 15
401 Nepal 667 T 15 15
402 Nepal 668 A 15 15
403 Nepal 669 G 15 15
404 Nepal 670 T 15 15
405 Nepal 671 T 15 15
406 Nepal 672 A 15 15
407 Nepal 673 C 15 15
408 Nepal 674 G 15 15
409 Nepal 675 G 15 15
410 Nepal 676 C 15 15
411 Nepal 677 G 15 15
412 Nepal 678 C 15 15
413 Nepal 679 C 15 15
414 Nepal 680 G 15 15
415 Nepal 681 A 15 15
416 Nepal 682 T 15 15
417 Nepal 683 C 15 15
418 Nepal 684 T 15 15
419 Nepal 685 A 15 15
420 Nepal 686 A 15 15
421 Nepal 687 A 15 15
422 Nepal 688 G 15 15
423 Nepal 689 T 15 15
424 Nepal 690 C 15 15
425 Nepal 691 A 15 15
426 Nepal 692 T 15 15
427 Nepal 693 T 15 15
428 Nepal 694 T 15 15
429 Nepal 695 G 15 15
430 Nepal 696 A 15 15
431 Nepal 697 C 15 15
432 Nepal 698 T 15 15
433 Nepal 699 T 15 15
434 Nepal 700 A 15 15
435 Nepal 701 G 15 15
436 Nepal 702 G 15 15
437 Nepal 703 C 15 15
438 Nepal 704 G 15 15
439 Nepal 705 A 15 15
440 Nepal 706 C 15 15
441 Nepal 707 G 15 15
442 Nepal 708 A 15 15
443 Nepal 709 G 15 15
444 Nepal 710 C 15 15
445 Nepal 711 T 15 15
446 Nepal 712 T 15 15
447 Nepal 713 G 15 15
448 Nepal 714 G 15 15
449 Nepal 715 C 15 15
450 Nepal 716 A 15 15
451 Nepal 717 C 15 15
452 Nepal 718 T 15 15
453 Nepal 719 G 15 15
454 Nepal 720 A 15 15
455 Nepal 721 T 15 15
456 Nepal 722 C 15 15
457 Nepal 723 C 15 15
458 Nepal 724 T 15 15
459 Nepal 725 T 15 15
460 Nepal 726 A 15 15
461 Nepal 727 T 15 15
462 Nepal 728 G 15 15
463 Nepal 729 A 15 15
464 Nepal 730 A 15 15
465 Nepal 731 G 15 15
466 Nepal 732 A 15 15
467 Nepal 733 T 15 15
468 Nepal 734 T 15 15
469 Nepal 735 T 15 15
470 Nepal 736 T 15 15
471 Nepal 737 C 15 15
472 Nepal 738 A 15 15
473 Nepal 739 A 15 15
474 Nepal 740 G 15 15
475 Nepal 741 A 15 15
476 Nepal 742 A 15 15
477 Nepal 743 A 15 15
478 Nepal 744 A 15 15
479 Nepal 745 C 15 15
480 Nepal 746 T 15 15
481 Nepal 747 G 15 15
482 Nepal 748 G 15 15
483 Nepal 749 A 15 15
484 Nepal 750 A 15 15
485 Nepal 751 C 15 15
486 Nepal 752 A 15 15
487 Nepal 753 C 15 15
488 Nepal 754 T 15 15
489 Nepal 755 A 15 15
490 Nepal 756 A 15 15
491 Nepal 757 A 15 15
492 Nepal 758 C 15 15
493 Nepal 759 A 15 15
494 Nepal 760 T 15 15
495 Nepal 761 A 15 15
496 Nepal 762 G 15 15
497 Nepal 763 C 15 15
498 Nepal 764 A 15 15
499 Nepal 765 G 15 15
500 Nepal 766 T 15 15
501 Nepal 767 G 15 15
502 Nepal 768 G 15 15
503 Nepal 769 T 15 15
504 Nepal 770 G 15 15
505 Nepal 771 T 15 15
506 Nepal 772 T 15 15
507 Nepal 773 A 15 15
508 Nepal 774 C 15 15
509 Nepal 775 C 15 15
510 Nepal 776 C 15 15
511 Nepal 777 G 15 15
512 Nepal 778 T 15 15
513 Nepal 779 G 15 15
514 Nepal 780 A 15 15
515 Nepal 781 A 15 15
516 Nepal 782 C 15 15
517 Nepal 783 T 15 15
518 Nepal 784 C 15 15
519 Nepal 785 A 15 15
520 Nepal 786 T 15 15
521 Nepal 787 G 15 15
522 Nepal 788 C 15 15
523 Nepal 789 G 15 15
524 Nepal 790 T 15 15
525 Nepal 791 G 15 15
526 Nepal 792 A 15 15
527 Nepal 793 G 15 15
528 Nepal 794 C 15 15
529 Nepal 795 T 15 15
530 Nepal 796 T 15 15
531 Nepal 797 A 15 15
532 Nepal 798 A 15 15
533 Nepal 799 C 15 15
534 Nepal 800 G 15 15
535 Nepal 801 G 15 15
536 Nepal 802 A 15 15
537 Nepal 803 G 15 15
538 Nepal 804 G 15 15
539 Nepal 805 G 15 15