National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   540                                        
?                                            
A   21                                        
C   3                                        
D   27                                        
E   54     1 1                                
F   15                                        
G   66                                        
H   21                                        
I   9                                        
K   27                                        
L   63                   3                    
M   9                                        
N   18                                        
P   24                                        
Q   21       1                                
R   30                                        
S   30                               1        
T   21               1                        
V   63               1                   2    
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Morocco 266 A 118 118
1 Morocco 267 T 118 118
2 Morocco 268 G 118 118
3 Morocco 269 G 118 118
4 Morocco 270 A 118 118
5 Morocco 271 G 118 118
6 Morocco 272 A 118 118
7 Morocco 273 G 118 118
8 Morocco 274 C 118 118
9 Morocco 275 C 118 118
10 Morocco 276 T 118 118
11 Morocco 277 T 118 118
12 Morocco 278 G 119 119
13 Morocco 279 T 119 119
14 Morocco 280 C 119 119
15 Morocco 281 C 119 119
16 Morocco 282 C 119 119
17 Morocco 283 T 119 119
18 Morocco 284 G 119 119
19 Morocco 285 G 119 119
20 Morocco 286 T 119 119
21 Morocco 287 T 119 119
22 Morocco 288 T 119 119
23 Morocco 289 C 119 119
24 Morocco 290 A 119 119
25 Morocco 291 A 119 119
26 Morocco 292 C 119 119
27 Morocco 293 G 119 119
28 Morocco 294 A 119 119
29 Morocco 295 G 119 119
30 Morocco 296 A 119 119
31 Morocco 297 A 119 119
32 Morocco 298 A 119 119
33 Morocco 299 A 119 119
34 Morocco 300 C T 119 118 Thr12Ile
35 Morocco 301 A 119 119
36 Morocco 302 C 119 119
37 Morocco 303 A 119 119
38 Morocco 304 C 119 119
39 Morocco 305 G 119 119
40 Morocco 306 T 119 119
41 Morocco 307 C 119 119
42 Morocco 308 C 119 119
43 Morocco 309 A 119 119
44 Morocco 310 A 119 119
45 Morocco 311 C 119 119
46 Morocco 312 T 119 119
47 Morocco 313 C T 119 117 Leu16Leu
48 Morocco 314 A 119 119
49 Morocco 315 G 119 119
50 Morocco 316 T 119 119
51 Morocco 317 T 119 119
52 Morocco 318 T 119 119
53 Morocco 319 G 119 119
54 Morocco 320 C 119 119
55 Morocco 321 C 121 121
56 Morocco 322 T 121 121
57 Morocco 323 G 121 121
58 Morocco 324 T 121 121
59 Morocco 325 T 121 121
60 Morocco 326 T 121 121
61 Morocco 327 T 121 121
62 Morocco 328 A 121 121
63 Morocco 329 C G 121 119 Gln22Glu
64 Morocco 330 A 121 121
65 Morocco 331 G 121 121
66 Morocco 332 G 121 121
67 Morocco 333 T 121 121
68 Morocco 334 T 121 121
69 Morocco 335 C 121 121
70 Morocco 336 G 121 121
71 Morocco 337 C 121 121
72 Morocco 338 G 121 121
73 Morocco 339 A 121 121
74 Morocco 340 C 121 121
75 Morocco 341 G 121 121
76 Morocco 342 T 121 121
77 Morocco 343 G 121 121
78 Morocco 344 C 121 121
79 Morocco 345 T 121 121
80 Morocco 346 C 121 121
81 Morocco 347 G 121 121
82 Morocco 348 T 121 121
83 Morocco 349 A 121 121
84 Morocco 350 C 121 121
85 Morocco 351 G 121 121
86 Morocco 352 T 121 121
87 Morocco 353 G 121 121
88 Morocco 354 G 121 121
89 Morocco 355 C 121 121
90 Morocco 356 T 121 121
91 Morocco 357 T 121 121
92 Morocco 358 T 121 121
93 Morocco 359 G 121 121
94 Morocco 360 G 121 121
95 Morocco 361 A 121 121
96 Morocco 362 G 121 121
97 Morocco 363 A 121 121
98 Morocco 364 C 121 121
99 Morocco 365 T 121 121
100 Morocco 366 C 121 121
101 Morocco 367 C 121 121
102 Morocco 368 G 121 121
103 Morocco 369 T 121 121
104 Morocco 370 G 121 121
105 Morocco 371 G 121 121
106 Morocco 372 A 121 121
107 Morocco 373 G 121 121
108 Morocco 374 G 121 121
109 Morocco 375 A 121 121
110 Morocco 376 G T 121 119 Glu37Asp
111 Morocco 377 G 121 121
112 Morocco 378 T 121 121
113 Morocco 379 C 121 121
114 Morocco 380 T 121 121
115 Morocco 381 T 121 121
116 Morocco 382 A 121 121
117 Morocco 383 T 121 121
118 Morocco 384 C 121 121
119 Morocco 385 A 121 121
120 Morocco 386 G 121 121
121 Morocco 387 A 121 121
122 Morocco 388 G 121 121
123 Morocco 389 G 121 121
124 Morocco 390 C 121 121
125 Morocco 391 A 121 121
126 Morocco 392 C 121 121
127 Morocco 393 G 121 121
128 Morocco 394 T 121 121
129 Morocco 395 C 121 121
130 Morocco 396 A 121 121
131 Morocco 397 A 121 121
132 Morocco 398 C 121 121
133 Morocco 399 A 121 121
134 Morocco 400 T 121 121
135 Morocco 401 C 121 121
136 Morocco 402 T 121 121
137 Morocco 403 T 121 121
138 Morocco 404 A 121 121
139 Morocco 405 A 121 121
140 Morocco 406 A 121 121
141 Morocco 407 G 121 121
142 Morocco 408 A 121 121
143 Morocco 409 T 121 121
144 Morocco 410 G 121 121
145 Morocco 411 G 121 121
146 Morocco 412 C 121 121
147 Morocco 413 A 121 121
148 Morocco 414 C 121 121
149 Morocco 415 T 121 121
150 Morocco 416 T 121 121
151 Morocco 417 G 121 121
152 Morocco 418 T 121 121
153 Morocco 419 G 121 121
154 Morocco 420 G 121 121
155 Morocco 421 C 121 121
156 Morocco 422 T 121 121
157 Morocco 423 T 121 121
158 Morocco 424 A 121 121
159 Morocco 425 G 121 121
160 Morocco 426 T 121 121
161 Morocco 427 A 121 121
162 Morocco 428 G 121 121
163 Morocco 429 A 121 121
164 Morocco 430 A 121 121
165 Morocco 431 G 121 121
166 Morocco 432 T 121 121
167 Morocco 433 T 121 121
168 Morocco 434 G 121 121
169 Morocco 435 A 121 121
170 Morocco 436 A 121 121
171 Morocco 437 A 121 121
172 Morocco 438 A 121 121
173 Morocco 439 A 121 121
174 Morocco 440 G 121 121
175 Morocco 441 G 121 121
176 Morocco 442 C 121 121
177 Morocco 443 G 121 121
178 Morocco 444 T 121 121
179 Morocco 445 T C 121 117 Val60Val
180 Morocco 446 T 121 121
181 Morocco 447 T 121 121
182 Morocco 448 G 121 121
183 Morocco 449 C 121 121
184 Morocco 450 C 121 121
185 Morocco 451 T 121 121
186 Morocco 452 C 121 121
187 Morocco 453 A 120 120
188 Morocco 454 A 120 120
189 Morocco 455 C 120 120
190 Morocco 456 T 120 120
191 Morocco 457 T 120 120
192 Morocco 458 G 120 120
193 Morocco 459 A 120 120
194 Morocco 460 A 120 120
195 Morocco 461 C 120 120
196 Morocco 462 A 120 120
197 Morocco 463 G 120 120
198 Morocco 464 C 120 120
199 Morocco 465 C 120 120
200 Morocco 466 C 120 120
201 Morocco 467 T 120 120
202 Morocco 468 A 120 120
203 Morocco 469 T 120 120
204 Morocco 470 G 120 120
205 Morocco 471 T 120 120
206 Morocco 472 G 120 120
207 Morocco 473 T 120 120
208 Morocco 474 T 120 120
209 Morocco 475 C 120 120
210 Morocco 476 A 120 120
211 Morocco 477 T 120 120
212 Morocco 478 C 120 120
213 Morocco 479 A 120 120
214 Morocco 480 A 120 120
215 Morocco 481 A 120 120
216 Morocco 482 C 120 120
217 Morocco 483 G 120 120
218 Morocco 484 T 120 120
219 Morocco 485 T 120 120
220 Morocco 486 C 120 120
221 Morocco 487 G 120 120
222 Morocco 488 G 120 120
223 Morocco 489 A 120 120
224 Morocco 490 T 120 120
225 Morocco 491 G 120 120
226 Morocco 492 C 120 120
227 Morocco 493 T 120 120
228 Morocco 494 C 120 120
229 Morocco 495 G 120 120
230 Morocco 496 A 120 120
231 Morocco 497 A 120 120
232 Morocco 498 C 120 120
233 Morocco 499 T 120 120
234 Morocco 500 G 120 120
235 Morocco 501 C 120 120
236 Morocco 502 A 120 120
237 Morocco 503 C 120 120
238 Morocco 504 C 120 120
239 Morocco 505 T 119 119
240 Morocco 506 C 119 119
241 Morocco 507 A 119 119
242 Morocco 508 T 119 119
243 Morocco 509 G 119 119
244 Morocco 510 G 119 119
245 Morocco 511 T 119 119
246 Morocco 512 C 119 119
247 Morocco 513 A 119 119
248 Morocco 514 T 119 119
249 Morocco 515 G 120 120
250 Morocco 516 T 120 120
251 Morocco 517 T 120 120
252 Morocco 518 A 120 120
253 Morocco 519 T 120 120
254 Morocco 520 G 120 120
255 Morocco 521 G 120 120
256 Morocco 522 T 120 120
257 Morocco 523 T 120 120
258 Morocco 524 G 120 120
259 Morocco 525 A 120 120
260 Morocco 526 G 120 120
261 Morocco 527 C T 120 119 Leu88Leu
262 Morocco 528 T 120 120
263 Morocco 529 G 120 120
264 Morocco 530 G 120 120
265 Morocco 531 T 120 120
266 Morocco 532 A 120 120
267 Morocco 533 G 120 120
268 Morocco 534 C 120 120
269 Morocco 535 A 120 120
270 Morocco 536 G 120 120
271 Morocco 537 A 120 120
272 Morocco 538 A 120 120
273 Morocco 539 C 120 120
274 Morocco 540 T 120 120
275 Morocco 541 C 120 120
276 Morocco 542 G 120 120
277 Morocco 543 A 120 120
278 Morocco 544 A 120 120
279 Morocco 545 G 120 120
280 Morocco 546 G 120 120
281 Morocco 547 C 120 120
282 Morocco 548 A 120 120
283 Morocco 549 T 120 120
284 Morocco 550 T 120 120
285 Morocco 551 C 120 120
286 Morocco 552 A 120 120
287 Morocco 553 G 120 120
288 Morocco 554 T 120 120
289 Morocco 555 A 120 120
290 Morocco 556 C 120 120
291 Morocco 557 G 120 120
292 Morocco 558 G 120 120
293 Morocco 559 T 120 120
294 Morocco 560 C 120 120
295 Morocco 561 G 120 120
296 Morocco 562 T 120 120
297 Morocco 563 A 120 120
298 Morocco 564 G 120 120
299 Morocco 565 T 121 121
300 Morocco 566 G 121 120
301 Morocco 567 G 121 120
302 Morocco 568 T 121 120
303 Morocco 569 G 121 120
304 Morocco 570 A 121 120
305 Morocco 571 G A 121 120 Glu102Glu
306 Morocco 572 A 121 121
307 Morocco 573 C 121 121
308 Morocco 574 A 121 121
309 Morocco 575 C 121 121
310 Morocco 576 T 121 121
311 Morocco 577 T 121 121
312 Morocco 578 G 121 121
313 Morocco 579 G 121 121
314 Morocco 580 T 121 121
315 Morocco 581 G A 121 120 Val106Ile
316 Morocco 582 T 121 121
317 Morocco 583 C 121 121
318 Morocco 584 C 121 121
319 Morocco 585 T 121 121
320 Morocco 586 T 121 121
321 Morocco 587 G 121 121
322 Morocco 588 T 121 121
323 Morocco 589 C T 121 120 Val108Val
324 Morocco 590 C 121 121
325 Morocco 591 C 121 121
326 Morocco 592 T 121 121
327 Morocco 593 C 121 121
328 Morocco 594 A 121 121
329 Morocco 595 T 121 121
330 Morocco 596 G 121 121
331 Morocco 597 T 121 121
332 Morocco 598 G 121 121
333 Morocco 599 G 121 120
334 Morocco 600 G 121 120
335 Morocco 601 C 121 120
336 Morocco 602 G 121 120
337 Morocco 603 A 121 120
338 Morocco 604 A 121 120
339 Morocco 605 A 121 120
340 Morocco 606 T 121 120
341 Morocco 607 A 121 120
342 Morocco 608 C 121 120
343 Morocco 609 C 121 120
344 Morocco 610 A 121 120
345 Morocco 611 G 121 120
346 Morocco 612 T 121 120
347 Morocco 613 G 121 120
348 Morocco 614 G 121 120
349 Morocco 615 C 121 121
350 Morocco 616 T 121 121
351 Morocco 617 T 121 121
352 Morocco 618 A 121 121
353 Morocco 619 C 121 121
354 Morocco 620 C 121 121
355 Morocco 621 G 121 121
356 Morocco 622 C 121 121
357 Morocco 623 A 121 121
358 Morocco 624 A 121 121
359 Morocco 625 G 121 121
360 Morocco 626 G 121 121
361 Morocco 627 T 121 121
362 Morocco 628 T 121 121
363 Morocco 629 C 121 121
364 Morocco 630 T 121 121
365 Morocco 631 T 121 121
366 Morocco 632 C 121 121
367 Morocco 633 T 121 121
368 Morocco 634 T 121 121
369 Morocco 635 C 121 121
370 Morocco 636 G 121 121
371 Morocco 637 T 121 121
372 Morocco 638 A 121 121
373 Morocco 639 A 121 121
374 Morocco 640 G 121 121
375 Morocco 641 A 121 121
376 Morocco 642 A 121 121
377 Morocco 643 C 121 121
378 Morocco 644 G 121 121
379 Morocco 645 G 121 121
380 Morocco 646 T 121 121
381 Morocco 647 A 121 121
382 Morocco 648 A 121 121
383 Morocco 649 T 121 121
384 Morocco 650 A 121 121
385 Morocco 651 A 121 121
386 Morocco 652 A 121 121
387 Morocco 653 G 121 121
388 Morocco 654 G 121 121
389 Morocco 655 A 121 121
390 Morocco 656 G 121 121
391 Morocco 657 C 121 121
392 Morocco 658 T 121 121
393 Morocco 659 G 121 121
394 Morocco 660 G 121 121
395 Morocco 661 T 121 121
396 Morocco 662 G 121 121
397 Morocco 663 G 121 121
398 Morocco 664 C 121 121
399 Morocco 665 C 121 121
400 Morocco 666 A 121 121
401 Morocco 667 T 121 121
402 Morocco 668 A 121 121
403 Morocco 669 G 121 121
404 Morocco 670 T 121 121
405 Morocco 671 T 121 121
406 Morocco 672 A 121 121
407 Morocco 673 C 121 121
408 Morocco 674 G 121 121
409 Morocco 675 G 121 121
410 Morocco 676 C 121 121
411 Morocco 677 G 121 121
412 Morocco 678 C 121 121
413 Morocco 679 C 121 121
414 Morocco 680 G 121 121
415 Morocco 681 A 121 121
416 Morocco 682 T 121 121
417 Morocco 683 C T 121 120 Leu140Leu
418 Morocco 684 T 121 121
419 Morocco 685 A 121 121
420 Morocco 686 A 121 121
421 Morocco 687 A 121 121
422 Morocco 688 G 121 121
423 Morocco 689 T 121 121
424 Morocco 690 C 121 121
425 Morocco 691 A C 121 119 Ser142Ser
426 Morocco 692 T 121 121
427 Morocco 693 T 121 121
428 Morocco 694 T 121 121
429 Morocco 695 G 121 121
430 Morocco 696 A 121 121
431 Morocco 697 C 121 121
432 Morocco 698 T 121 121
433 Morocco 699 T 121 121
434 Morocco 700 A 121 121
435 Morocco 701 G 121 121
436 Morocco 702 G 121 121
437 Morocco 703 C 121 121
438 Morocco 704 G 121 121
439 Morocco 705 A 121 121
440 Morocco 706 C 121 121
441 Morocco 707 G 121 121
442 Morocco 708 A 121 121
443 Morocco 709 G 121 121
444 Morocco 710 C 121 121
445 Morocco 711 T 121 121
446 Morocco 712 T 121 121
447 Morocco 713 G 121 121
448 Morocco 714 G 121 121
449 Morocco 715 C 121 121
450 Morocco 716 A 121 121
451 Morocco 717 C 121 121
452 Morocco 718 T 121 121
453 Morocco 719 G 121 121
454 Morocco 720 A 121 121
455 Morocco 721 T 121 121
456 Morocco 722 C 121 121
457 Morocco 723 C 121 121
458 Morocco 724 T 121 121
459 Morocco 725 T 121 121
460 Morocco 726 A 121 121
461 Morocco 727 T 120 120
462 Morocco 728 G 120 120
463 Morocco 729 A 120 120
464 Morocco 730 A 120 120
465 Morocco 731 G 120 120
466 Morocco 732 A 120 120
467 Morocco 733 T 120 120
468 Morocco 734 T 120 120
469 Morocco 735 T 120 120
470 Morocco 736 T 120 120
471 Morocco 737 C 120 120
472 Morocco 738 A 120 120
473 Morocco 739 A 120 120
474 Morocco 740 G 120 120
475 Morocco 741 A 120 120
476 Morocco 742 A 120 120
477 Morocco 743 A 120 120
478 Morocco 744 A 120 120
479 Morocco 745 C 120 120
480 Morocco 746 T 120 120
481 Morocco 747 G 120 120
482 Morocco 748 G 120 120
483 Morocco 749 A 120 120
484 Morocco 750 A 120 120
485 Morocco 751 C 120 120
486 Morocco 752 A 120 120
487 Morocco 753 C 120 120
488 Morocco 754 T 120 120
489 Morocco 755 A 120 120
490 Morocco 756 A 120 120
491 Morocco 757 A 120 120
492 Morocco 758 C 120 120
493 Morocco 759 A 120 120
494 Morocco 760 T 120 120
495 Morocco 761 A 120 120
496 Morocco 762 G 120 120
497 Morocco 763 C 120 120
498 Morocco 764 A 120 120
499 Morocco 765 G 120 120
500 Morocco 766 T 120 120
501 Morocco 767 G 120 120
502 Morocco 768 G 120 120
503 Morocco 769 T 120 120
504 Morocco 770 G 120 120
505 Morocco 771 T 120 120
506 Morocco 772 T 120 120
507 Morocco 773 A 120 120
508 Morocco 774 C 120 120
509 Morocco 775 C 120 120
510 Morocco 776 C 120 120
511 Morocco 777 G 120 120
512 Morocco 778 T 120 120
513 Morocco 779 G 120 120
514 Morocco 780 A 120 120
515 Morocco 781 A 120 120
516 Morocco 782 C 120 120
517 Morocco 783 T 120 120
518 Morocco 784 C 120 120
519 Morocco 785 A 120 120
520 Morocco 786 T 120 120
521 Morocco 787 G 120 120
522 Morocco 788 C 120 120
523 Morocco 789 G 120 120
524 Morocco 790 T 120 120
525 Morocco 791 G 120 120
526 Morocco 792 A 120 120
527 Morocco 793 G 120 120
528 Morocco 794 C 120 120
529 Morocco 795 T 120 120
530 Morocco 796 T 120 120
531 Morocco 797 A 120 120
532 Morocco 798 A 120 120
533 Morocco 799 C 120 120
534 Morocco 800 G 120 120
535 Morocco 801 G 120 120
536 Morocco 802 A 120 120
537 Morocco 803 G 120 120
538 Morocco 804 G 120 120
539 Morocco 805 G 120 120