National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   540                                        
?                                            
A   21 1                                      
C   3                                        
D   27                                        
E   54 1   1     1                            
F   15                                        
G   66           2                       1    
H   21                                       1
I   9               1                        
K   27                       1     1          
L   63         2         5                    
M   9                                        
N   18                                        
P   24                               1        
Q   21                           1            
R   30   1                         1          
S   30                               2        
T   21               2                        
V   63 1             1                   2    
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Mexico 266 A 597 597
1 Mexico 267 T 597 597
2 Mexico 268 G 597 597
3 Mexico 269 G 597 597
4 Mexico 270 A 597 597
5 Mexico 271 G 597 597
6 Mexico 272 A 597 597
7 Mexico 273 G 597 597
8 Mexico 274 C T 597 596 Ser3Ser
9 Mexico 275 C 597 597
10 Mexico 276 T 597 597
11 Mexico 277 T 597 597
12 Mexico 278 G 597 597
13 Mexico 279 T 597 597
14 Mexico 280 C 597 597
15 Mexico 281 C 597 597
16 Mexico 282 C 597 597
17 Mexico 283 T 597 597
18 Mexico 284 G 597 597
19 Mexico 285 G 597 597
20 Mexico 286 T 597 597
21 Mexico 287 T 597 597
22 Mexico 288 T 597 597
23 Mexico 289 C 597 597
24 Mexico 290 A 597 597
25 Mexico 291 A 597 597
26 Mexico 292 C 597 597
27 Mexico 293 G 597 597
28 Mexico 294 A 597 597
29 Mexico 295 G 597 597
30 Mexico 296 A 597 597
31 Mexico 297 A 597 597
32 Mexico 298 A 597 597
33 Mexico 299 A 597 597
34 Mexico 300 C 597 597
35 Mexico 301 A 597 597
36 Mexico 302 C 597 597
37 Mexico 303 A 597 597
38 Mexico 304 C 597 597
39 Mexico 305 G 597 597
40 Mexico 306 T 597 597
41 Mexico 307 C 597 597
42 Mexico 308 C 597 597
43 Mexico 309 A 597 597
44 Mexico 310 A 597 597
45 Mexico 311 C T 597 596 Leu16Phe
46 Mexico 312 T 597 597
47 Mexico 313 C T 597 595 Leu16Leu
48 Mexico 314 A 597 597
49 Mexico 315 G 597 597
50 Mexico 316 T 597 597
51 Mexico 317 T 597 597
52 Mexico 318 T 597 597
53 Mexico 319 G A 597 596 Leu18Leu
54 Mexico 320 C 597 597
55 Mexico 321 C 597 597
56 Mexico 322 T 597 597
57 Mexico 323 G 597 597
58 Mexico 324 T 597 597
59 Mexico 325 T 597 597
60 Mexico 326 T 597 597
61 Mexico 327 T 597 597
62 Mexico 328 A 597 597
63 Mexico 329 C 597 597
64 Mexico 330 A 597 597
65 Mexico 331 G A 598 597 Gln22Gln
66 Mexico 332 G 598 598
67 Mexico 333 T 598 598
68 Mexico 334 T 598 598
69 Mexico 335 C T 598 596 Arg24Cys
70 Mexico 336 G 598 598
71 Mexico 337 C T 598 597 Arg24Arg
72 Mexico 338 G 598 598
73 Mexico 339 A 598 598
74 Mexico 340 C 598 598
75 Mexico 341 G 598 598
76 Mexico 342 T 598 598
77 Mexico 343 G 598 598
78 Mexico 344 C T 598 595 Leu27Phe
79 Mexico 345 T 598 598
80 Mexico 346 C T 598 596 Leu27Leu
81 Mexico 347 G A 598 597 Val28Ile
82 Mexico 348 T 598 598
83 Mexico 349 A 598 598
84 Mexico 350 C 598 598
85 Mexico 351 G 598 598
86 Mexico 352 T 598 598
87 Mexico 353 G 598 598
88 Mexico 354 G 598 598
89 Mexico 355 C 598 598
90 Mexico 356 T 598 598
91 Mexico 357 T 598 598
92 Mexico 358 T 598 598
93 Mexico 359 G 598 598
94 Mexico 360 G 598 598
95 Mexico 361 A 598 598
96 Mexico 362 G 598 598
97 Mexico 363 A 598 598
98 Mexico 364 C 598 598
99 Mexico 365 T 598 598
100 Mexico 366 C 598 598
101 Mexico 367 C 598 598
102 Mexico 368 G 598 598
103 Mexico 369 T 598 598
104 Mexico 370 G 598 598
105 Mexico 371 G 598 598
106 Mexico 372 A 598 598
107 Mexico 373 G 598 598
108 Mexico 374 G 598 598
109 Mexico 375 A 598 598
110 Mexico 376 G T 598 596 Glu37Asp
111 Mexico 377 G 598 598
112 Mexico 378 T 598 598
113 Mexico 379 C A 598 596 Val38Val
114 Mexico 380 T 598 598
115 Mexico 381 T 598 598
116 Mexico 382 A 598 598
117 Mexico 383 T 598 598
118 Mexico 384 C 598 598
119 Mexico 385 A 598 598
120 Mexico 386 G 598 598
121 Mexico 387 A 598 598
122 Mexico 388 G 598 598
123 Mexico 389 G 598 598
124 Mexico 390 C 598 598
125 Mexico 391 A 598 598
126 Mexico 392 C 598 598
127 Mexico 393 G 598 598
128 Mexico 394 T 598 598
129 Mexico 395 C 598 598
130 Mexico 396 A 598 598
131 Mexico 397 A 598 598
132 Mexico 398 C T 598 597 His45Tyr
133 Mexico 399 A 598 598
134 Mexico 400 T 598 598
135 Mexico 401 C 598 598
136 Mexico 402 T 598 598
137 Mexico 403 T 598 598
138 Mexico 404 A 598 598
139 Mexico 405 A 598 598
140 Mexico 406 A 598 598
141 Mexico 407 G 598 598
142 Mexico 408 A 598 598
143 Mexico 409 T 598 598
144 Mexico 410 G 598 598
145 Mexico 411 G 598 598
146 Mexico 412 C T 598 597 Gly49Gly
147 Mexico 413 A 598 598
148 Mexico 414 C T 598 597 Thr50Ile
149 Mexico 415 T 598 598
150 Mexico 416 T 598 598
151 Mexico 417 G 598 598
152 Mexico 418 T 598 598
153 Mexico 419 G 598 598
154 Mexico 420 G T 598 597 Gly52Val
155 Mexico 421 C 598 598
156 Mexico 422 T 598 598
157 Mexico 423 T 598 598
158 Mexico 424 A 598 598
159 Mexico 425 G 598 598
160 Mexico 426 T 598 598
161 Mexico 427 A 598 598
162 Mexico 428 G 598 598
163 Mexico 429 A 598 598
164 Mexico 430 A 598 598
165 Mexico 431 G 598 598
166 Mexico 432 T 598 598
167 Mexico 433 T 598 598
168 Mexico 434 G 598 598
169 Mexico 435 A 598 598
170 Mexico 436 A 598 598
171 Mexico 437 A 598 598
172 Mexico 438 A 598 598
173 Mexico 439 A 598 598
174 Mexico 440 G 598 598
175 Mexico 441 G 598 598
176 Mexico 442 C 598 598
177 Mexico 443 G 598 598
178 Mexico 444 T 598 598
179 Mexico 445 T 598 598
180 Mexico 446 T 598 598
181 Mexico 447 T 598 598
182 Mexico 448 G 598 598
183 Mexico 449 C T 598 596 Pro62Ser
184 Mexico 450 C 598 598
185 Mexico 451 T 598 598
186 Mexico 452 C 598 598
187 Mexico 453 A 598 598
188 Mexico 454 A 598 598
189 Mexico 455 C 598 598
190 Mexico 456 T 598 598
191 Mexico 457 T 598 598
192 Mexico 458 G 598 598
193 Mexico 459 A 598 598
194 Mexico 460 A 598 598
195 Mexico 461 C 598 598
196 Mexico 462 A 598 598
197 Mexico 463 G 598 598
198 Mexico 464 C 598 598
199 Mexico 465 C 598 598
200 Mexico 466 C 598 598
201 Mexico 467 T 598 598
202 Mexico 468 A 598 598
203 Mexico 469 T 598 598
204 Mexico 470 G 598 598
205 Mexico 471 T 598 598
206 Mexico 472 G 598 597
207 Mexico 473 T 598 597
208 Mexico 474 T 598 597
209 Mexico 475 C 598 597
210 Mexico 476 A 598 597
211 Mexico 477 T 598 597
212 Mexico 478 C T 598 596 Ile71Ile
213 Mexico 479 A 598 597
214 Mexico 480 A 598 597
215 Mexico 481 A 598 597
216 Mexico 482 C 598 597
217 Mexico 483 G 598 597
218 Mexico 484 T 598 597
219 Mexico 485 T 598 597
220 Mexico 486 C 598 597
221 Mexico 487 G 598 597
222 Mexico 488 G 598 597
223 Mexico 489 A 598 597
224 Mexico 490 T 598 597
225 Mexico 491 G 598 597
226 Mexico 492 C 598 597
227 Mexico 493 T 598 597
228 Mexico 494 C 598 597
229 Mexico 495 G 598 598
230 Mexico 496 A 598 598
231 Mexico 497 A 598 598
232 Mexico 498 C 598 598
233 Mexico 499 T 598 598
234 Mexico 500 G 598 598
235 Mexico 501 C 598 598
236 Mexico 502 A 598 598
237 Mexico 503 C 598 598
238 Mexico 504 C 598 598
239 Mexico 505 T 597 597
240 Mexico 506 C 597 597
241 Mexico 507 A 597 597
242 Mexico 508 T 597 597
243 Mexico 509 G 597 597
244 Mexico 510 G 597 597
245 Mexico 511 T 597 597
246 Mexico 512 C 597 597
247 Mexico 513 A 597 597
248 Mexico 514 T 597 597
249 Mexico 515 G 597 597
250 Mexico 516 T 597 597
251 Mexico 517 T 597 597
252 Mexico 518 A 597 597
253 Mexico 519 T 597 597
254 Mexico 520 G 597 597
255 Mexico 521 G 597 597
256 Mexico 522 T 597 597
257 Mexico 523 T 597 597
258 Mexico 524 G 597 597
259 Mexico 525 A 597 597
260 Mexico 526 G 597 597
261 Mexico 527 C T 597 596 Leu88Leu
262 Mexico 528 T 597 597
263 Mexico 529 G 597 597
264 Mexico 530 G 597 597
265 Mexico 531 T 597 597
266 Mexico 532 A 597 597
267 Mexico 533 G 597 597
268 Mexico 534 C 597 597
269 Mexico 535 A 597 597
270 Mexico 536 G 597 597
271 Mexico 537 A 597 597
272 Mexico 538 A 597 597
273 Mexico 539 C 597 597
274 Mexico 540 T 597 597
275 Mexico 541 C 597 597
276 Mexico 542 G 597 597
277 Mexico 543 A 597 597
278 Mexico 544 A 597 597
279 Mexico 545 G 597 597
280 Mexico 546 G 597 597
281 Mexico 547 C 597 597
282 Mexico 548 A 597 597
283 Mexico 549 T 597 597
284 Mexico 550 T 597 597
285 Mexico 551 C 597 597
286 Mexico 552 A 597 597
287 Mexico 553 G 597 597
288 Mexico 554 T 597 597
289 Mexico 555 A 597 597
290 Mexico 556 C 597 597
291 Mexico 557 G 597 597
292 Mexico 558 G 597 597
293 Mexico 559 T 597 597
294 Mexico 560 C 597 597
295 Mexico 561 G 597 597
296 Mexico 562 T 597 597
297 Mexico 563 A 597 597
298 Mexico 564 G 597 597
299 Mexico 565 T 598 598
300 Mexico 566 G 598 598
301 Mexico 567 G 598 598
302 Mexico 568 T 598 598
303 Mexico 569 G 598 598
304 Mexico 570 A G 598 597 Glu102Gly
305 Mexico 571 G 598 598
306 Mexico 572 A 598 598
307 Mexico 573 C 598 598
308 Mexico 574 A 598 598
309 Mexico 575 C 598 598
310 Mexico 576 T 598 598
311 Mexico 577 T 598 598
312 Mexico 578 G 598 598
313 Mexico 579 G 598 598
314 Mexico 580 T 598 598
315 Mexico 581 G 598 598
316 Mexico 582 T C 598 597 Val106Ala
317 Mexico 583 C 598 598
318 Mexico 584 C 598 598
319 Mexico 585 T 598 598
320 Mexico 586 T 598 598
321 Mexico 587 G 598 598
322 Mexico 588 T 598 598
323 Mexico 589 C 598 598
324 Mexico 590 C 598 598
325 Mexico 591 C 598 598
326 Mexico 592 T 598 598
327 Mexico 593 C 598 598
328 Mexico 594 A 598 598
329 Mexico 595 T 598 598
330 Mexico 596 G 598 598
331 Mexico 597 T 598 598
332 Mexico 598 G T 598 597 Val111Val
333 Mexico 599 G 598 598
334 Mexico 600 G 598 598
335 Mexico 601 C 598 598
336 Mexico 602 G 598 598
337 Mexico 603 A 598 598
338 Mexico 604 A 598 598
339 Mexico 605 A 598 598
340 Mexico 606 T 598 598
341 Mexico 607 A 598 598
342 Mexico 608 C 598 598
343 Mexico 609 C 598 598
344 Mexico 610 A 598 598
345 Mexico 611 G 598 598
346 Mexico 612 T 598 598
347 Mexico 613 G 598 598
348 Mexico 614 G 598 598
349 Mexico 615 C 598 598
350 Mexico 616 T 598 598
351 Mexico 617 T 598 598
352 Mexico 618 A 598 598
353 Mexico 619 C 598 598
354 Mexico 620 C 598 598
355 Mexico 621 G 598 598
356 Mexico 622 C 598 598
357 Mexico 623 A 598 598
358 Mexico 624 A 598 598
359 Mexico 625 G T 598 597 Lys120Asn
360 Mexico 626 G 598 598
361 Mexico 627 T 598 598
362 Mexico 628 T 598 598
363 Mexico 629 C 598 598
364 Mexico 630 T 598 598
365 Mexico 631 T 598 598
366 Mexico 632 C 598 598
367 Mexico 633 T 598 598
368 Mexico 634 T 598 598
369 Mexico 635 C 598 597
370 Mexico 636 G 598 598
371 Mexico 637 T 598 598
372 Mexico 638 A 598 598
373 Mexico 639 A 598 598
374 Mexico 640 G 598 598
375 Mexico 641 A 598 598
376 Mexico 642 A 598 598
377 Mexico 643 C 598 598
378 Mexico 644 G 598 598
379 Mexico 645 G 598 598
380 Mexico 646 T 598 598
381 Mexico 647 A 598 598
382 Mexico 648 A 598 598
383 Mexico 649 T 598 598
384 Mexico 650 A 598 598
385 Mexico 651 A 598 598
386 Mexico 652 A 598 598
387 Mexico 653 G 598 598
388 Mexico 654 G 598 598
389 Mexico 655 A 598 598
390 Mexico 656 G 598 598
391 Mexico 657 C 598 598
392 Mexico 658 T 598 598
393 Mexico 659 G 598 598
394 Mexico 660 G 598 598
395 Mexico 661 T 598 598
396 Mexico 662 G 598 598
397 Mexico 663 G 598 598
398 Mexico 664 C 598 598
399 Mexico 665 C 598 598
400 Mexico 666 A 598 598
401 Mexico 667 T 598 598
402 Mexico 668 A 598 598
403 Mexico 669 G 598 598
404 Mexico 670 T 598 598
405 Mexico 671 T 598 598
406 Mexico 672 A 598 598
407 Mexico 673 C 598 598
408 Mexico 674 G 598 598
409 Mexico 675 G 598 598
410 Mexico 676 C 598 598
411 Mexico 677 G 598 598
412 Mexico 678 C 598 598
413 Mexico 679 C T 598 597 Ala138Ala
414 Mexico 680 G 598 598
415 Mexico 681 A 598 598
416 Mexico 682 T 598 598
417 Mexico 683 C T 598 597 Leu140Leu
418 Mexico 684 T 598 598
419 Mexico 685 A 598 598
420 Mexico 686 A 598 598
421 Mexico 687 A G 598 596 Lys141Arg
422 Mexico 688 G 598 598
423 Mexico 689 T 598 598
424 Mexico 690 C 598 598
425 Mexico 691 A C 598 597 Ser142Ser
426 Mexico 692 T 598 598
427 Mexico 693 T 598 598
428 Mexico 694 T 598 598
429 Mexico 695 G 598 598
430 Mexico 696 A 598 598
431 Mexico 697 C 598 598
432 Mexico 698 T 598 598
433 Mexico 699 T 598 598
434 Mexico 700 A 598 598
435 Mexico 701 G 598 598
436 Mexico 702 G 598 598
437 Mexico 703 C 598 598
438 Mexico 704 G 598 598
439 Mexico 705 A 598 598
440 Mexico 706 C 598 598
441 Mexico 707 G 598 598
442 Mexico 708 A C 598 597 Glu148Ala
443 Mexico 709 G 598 598
444 Mexico 710 C 598 598
445 Mexico 711 T 598 598
446 Mexico 712 T 598 598
447 Mexico 713 G 598 598
448 Mexico 714 G 598 598
449 Mexico 715 C T 598 597 Gly150Gly
450 Mexico 716 A 598 598
451 Mexico 717 C 598 598
452 Mexico 718 T 598 598
453 Mexico 719 G 598 598
454 Mexico 720 A 598 598
455 Mexico 721 T 598 598
456 Mexico 722 C 598 598
457 Mexico 723 C 598 598
458 Mexico 724 T 598 598
459 Mexico 725 T 598 598
460 Mexico 726 A 598 598
461 Mexico 727 T 598 598
462 Mexico 728 G 598 598
463 Mexico 729 A 598 598
464 Mexico 730 A 598 598
465 Mexico 731 G 598 598
466 Mexico 732 A 598 598
467 Mexico 733 T 598 598
468 Mexico 734 T 598 598
469 Mexico 735 T 598 598
470 Mexico 736 T 598 598
471 Mexico 737 C 598 598
472 Mexico 738 A 598 598
473 Mexico 739 A 598 598
474 Mexico 740 G 598 598
475 Mexico 741 A 598 598
476 Mexico 742 A 598 598
477 Mexico 743 A 598 598
478 Mexico 744 A 598 598
479 Mexico 745 C 598 598
480 Mexico 746 T 598 598
481 Mexico 747 G 598 598
482 Mexico 748 G 598 598
483 Mexico 749 A 598 598
484 Mexico 750 A 598 598
485 Mexico 751 C 598 598
486 Mexico 752 A 598 598
487 Mexico 753 C 598 598
488 Mexico 754 T 598 598
489 Mexico 755 A 598 598
490 Mexico 756 A 598 598
491 Mexico 757 A 598 598
492 Mexico 758 C 598 598
493 Mexico 759 A 598 598
494 Mexico 760 T 598 598
495 Mexico 761 A 598 598
496 Mexico 762 G 598 598
497 Mexico 763 C 598 598
498 Mexico 764 A 598 598
499 Mexico 765 G 598 598
500 Mexico 766 T 598 598
501 Mexico 767 G 598 598
502 Mexico 768 G 598 598
503 Mexico 769 T 598 598
504 Mexico 770 G 598 598
505 Mexico 771 T 598 598
506 Mexico 772 T 598 598
507 Mexico 773 A 598 598
508 Mexico 774 C T 598 597 Thr170Ile
509 Mexico 775 C 598 598
510 Mexico 776 C 598 598
511 Mexico 777 G 598 598
512 Mexico 778 T 598 598
513 Mexico 779 G 598 598
514 Mexico 780 A 598 598
515 Mexico 781 A 598 598
516 Mexico 782 C 598 598
517 Mexico 783 T 598 598
518 Mexico 784 C 598 598
519 Mexico 785 A 598 598
520 Mexico 786 T 598 598
521 Mexico 787 G 598 598
522 Mexico 788 C 598 598
523 Mexico 789 G 598 598
524 Mexico 790 T 598 598
525 Mexico 791 G 598 598
526 Mexico 792 A 598 598
527 Mexico 793 G 598 598
528 Mexico 794 C 598 598
529 Mexico 795 T 598 598
530 Mexico 796 T 598 598
531 Mexico 797 A 598 598
532 Mexico 798 A 598 598
533 Mexico 799 C 598 598
534 Mexico 800 G 598 598
535 Mexico 801 G 598 598
536 Mexico 802 A 598 598
537 Mexico 803 G 598 598
538 Mexico 804 G 598 598
539 Mexico 805 G 598 598