National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   540                                        
?                                            
A   21 1                                 1    
C   3   1                           1        
D   27     3     1           1                
E   54     2 3   1     2                      
F   15         1                              
G   66     2     2                   1        
H   21             1                         3
I   9               1                 1 1    
K   27                     1                  
L   63                   8     1              
M   9                                        
N   18                       2       2        
P   24             1     1           2        
Q   21                 1                      
R   30   2         2               2          
S   30   1                           2        
T   21 1             1       2         1      
V   63 1   1   2     1   1               6    
W   3                                        
Y   15             1                         4

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Italy 266 A 2945 2945
1 Italy 267 T 2945 2945
2 Italy 268 G 2945 2945
3 Italy 269 G 2945 2945
4 Italy 270 A 2945 2945
5 Italy 271 G 2945 2945
6 Italy 272 A 2945 2945
7 Italy 273 G 2945 2945
8 Italy 274 C T 2945 2943 Ser3Ser
9 Italy 275 C 2945 2945
10 Italy 276 T 2945 2945
11 Italy 277 T 2945 2945
12 Italy 278 G 2945 2945
13 Italy 279 T 2945 2945
14 Italy 280 C 2945 2945
15 Italy 281 C T 2945 2944 Pro6Ser
16 Italy 282 C 2945 2945
17 Italy 283 T 2945 2945
18 Italy 284 G 2945 2945
19 Italy 285 G 2945 2945
20 Italy 286 T 2945 2945
21 Italy 287 T 2945 2945
22 Italy 288 T 2945 2945
23 Italy 289 C 2945 2945
24 Italy 290 A 2945 2941
25 Italy 291 A 2945 2941
26 Italy 292 C T 2945 2940 Asn9Asn
27 Italy 293 G A 2945 2940 Glu10Lys
28 Italy 294 A 2946 2942
29 Italy 295 G 2946 2942
30 Italy 296 A 2946 2942
31 Italy 297 A 2946 2942
32 Italy 298 A 2946 2942
33 Italy 299 A 2946 2941
34 Italy 300 C T 2946 2940 Thr12Ile
35 Italy 301 A 2946 2941
36 Italy 302 C 2946 2941
37 Italy 303 A 2946 2941
38 Italy 304 C 2946 2941
39 Italy 305 G 2946 2941
40 Italy 306 T 2946 2941
41 Italy 307 C 2946 2942
42 Italy 308 C A 2946 2941 Gln15Lys
43 Italy 309 A 2946 2942
44 Italy 310 A 2946 2941
45 Italy 311 C 2946 2940
46 Italy 312 T C 2946 2941 Leu16Pro
47 Italy 313 C T 2955 2891 Leu16Leu
48 Italy 314 A 2955 2955
49 Italy 315 G 2955 2955
50 Italy 316 T 2955 2955
51 Italy 317 T 2955 2955
52 Italy 318 T 2955 2955
53 Italy 319 G 2955 2955
54 Italy 320 C 2956 2956
55 Italy 321 C 2956 2956
56 Italy 322 T 2956 2956
57 Italy 323 G 2956 2956
58 Italy 324 T 2956 2956
59 Italy 325 T 2956 2955
60 Italy 326 T 2956 2955
61 Italy 327 T 2956 2955
62 Italy 328 A 2956 2956
63 Italy 329 C 2956 2956
64 Italy 330 A 2956 2956
65 Italy 331 G 2956 2956
66 Italy 332 G 2956 2956
67 Italy 333 T 2956 2956
68 Italy 334 T 2956 2956
69 Italy 335 C T 2956 2950 Arg24Cys
70 Italy 336 G 2957 2957
71 Italy 337 C T 2957 2955 Arg24Arg
72 Italy 338 G 2957 2957
73 Italy 339 A 2957 2957
74 Italy 340 C 2957 2957
75 Italy 341 G 2957 2957
76 Italy 342 T C 2957 2956 Val26Ala
77 Italy 343 G 2957 2957
78 Italy 344 C 2957 2957
79 Italy 345 T 2957 2957
80 Italy 346 C T 2957 2954 Leu27Leu
81 Italy 347 G 2957 2957
82 Italy 348 T 2957 2957
83 Italy 349 A 2957 2957
84 Italy 350 C 2957 2957
85 Italy 351 G 2957 2957
86 Italy 352 T 2958 2958
87 Italy 353 G 2958 2958
88 Italy 354 G 2958 2958
89 Italy 355 C 2958 2957
90 Italy 356 T 2958 2958
91 Italy 357 T 2958 2958
92 Italy 358 T 2958 2958
93 Italy 359 G 2958 2958
94 Italy 360 G 2958 2958
95 Italy 361 A G 2958 2940 Gly32Gly
96 Italy 362 G A 2958 2943 Asp33Asn
97 Italy 363 A 2958 2958
98 Italy 364 C 2959 2959
99 Italy 365 T 2959 2959
100 Italy 366 C 2959 2959
101 Italy 367 C 2959 2959
102 Italy 368 G 2959 2959
103 Italy 369 T 2959 2959
104 Italy 370 G T 2959 2958 Val35Val
105 Italy 371 G 2959 2959
106 Italy 372 A 2959 2959
107 Italy 373 G A 2959 2958 Glu36Glu
108 Italy 374 G 2959 2959
109 Italy 375 A 2959 2959
110 Italy 376 G T 2959 2958 Glu37Asp
111 Italy 377 G T 2959 2956 Val38Phe
112 Italy 378 T 2959 2959
113 Italy 379 C T 2959 2958 Val38Val
114 Italy 380 T 2959 2959
115 Italy 381 T 2959 2959
116 Italy 382 A G 2959 2957 Leu39Leu
117 Italy 383 T 2959 2959
118 Italy 384 C 2959 2959
119 Italy 385 A 2959 2959
120 Italy 386 G 2958 2958
121 Italy 387 A G 2958 2957 Glu41Gly
122 Italy 388 G 2958 2958
123 Italy 389 G 2958 2958
124 Italy 390 C 2958 2958
125 Italy 391 A 2958 2958
126 Italy 392 C 2958 2958
127 Italy 393 G 2958 2958
128 Italy 394 T 2958 2958
129 Italy 395 C 2958 2958
130 Italy 396 A 2958 2958
131 Italy 397 A 2958 2958
132 Italy 398 C 2958 2958
133 Italy 399 A 2958 2958
134 Italy 400 T 2958 2958
135 Italy 401 C 2958 2958
136 Italy 402 T 2958 2958
137 Italy 403 T 2958 2958
138 Italy 404 A 2958 2958
139 Italy 405 A 2958 2958
140 Italy 406 A 2958 2958
141 Italy 407 G 2958 2958
142 Italy 408 A 2958 2958
143 Italy 409 T 2958 2958
144 Italy 410 G 2958 2958
145 Italy 411 G A 2958 2950 Gly49Asp
146 Italy 412 C 2958 2958
147 Italy 413 A 2958 2958
148 Italy 414 C A 2958 2952 Thr50Asn
149 Italy 415 T 2958 2958
150 Italy 416 T A 2958 2957 Cys51Ser
151 Italy 417 G 2958 2958
152 Italy 418 T C 2958 2957 Cys51Cys
153 Italy 419 G 2958 2958
154 Italy 420 G 2958 2958
155 Italy 421 C 2958 2958
156 Italy 422 T C 2958 2956 Leu53Leu
157 Italy 423 T 2958 2958
158 Italy 424 A 2958 2958
159 Italy 425 G A 2958 2957 Val54Ile
160 Italy 426 T 2958 2958
161 Italy 427 A 2958 2958
162 Italy 428 G 2958 2958
163 Italy 429 A 2958 2958
164 Italy 430 A G 2958 2957 Glu55Glu
165 Italy 431 G 2958 2958
166 Italy 432 T 2958 2958
167 Italy 433 T 2958 2958
168 Italy 434 G 2958 2958
169 Italy 435 A 2958 2958
170 Italy 436 A 2958 2958
171 Italy 437 A 2958 2958
172 Italy 438 A 2958 2958
173 Italy 439 A 2958 2958
174 Italy 440 G 2958 2958
175 Italy 441 G 2958 2958
176 Italy 442 C 2958 2958
177 Italy 443 G 2958 2958
178 Italy 444 T 2958 2958
179 Italy 445 T C 2958 2045 Val60Val
180 Italy 446 T 2959 2959
181 Italy 447 T 2959 2959
182 Italy 448 G 2959 2959
183 Italy 449 C 2959 2959
184 Italy 450 C T,A 2960 2955 Pro62Leu-p.Pro62His
185 Italy 451 T 2960 2960
186 Italy 452 C 2960 2960
187 Italy 453 A 2960 2960
188 Italy 454 A 2960 2960
189 Italy 455 C 2960 2960
190 Italy 456 T 2960 2960
191 Italy 457 T 2960 2960
192 Italy 458 G 2960 2960
193 Italy 459 A 2960 2960
194 Italy 460 A 2960 2960
195 Italy 461 C 2960 2960
196 Italy 462 A 2960 2960
197 Italy 463 G 2961 2961
198 Italy 464 C 2961 2961
199 Italy 465 C 2961 2961
200 Italy 466 C 2961 2961
201 Italy 467 T 2961 2961
202 Italy 468 A 2961 2961
203 Italy 469 T C 2961 2960 Tyr68Tyr
204 Italy 470 G 2961 2961
205 Italy 471 T 2961 2961
206 Italy 472 G 2961 2961
207 Italy 473 T 2961 2961
208 Italy 474 T 2961 2961
209 Italy 475 C T 2961 2958 Phe70Phe
210 Italy 476 A 2961 2961
211 Italy 477 T 2961 2961
212 Italy 478 C 2961 2961
213 Italy 479 A 2961 2961
214 Italy 480 A 2961 2961
215 Italy 481 A 2961 2961
216 Italy 482 C 2961 2961
217 Italy 483 G A 2961 2960 Arg73His
218 Italy 484 T 2961 2961
219 Italy 485 T 2961 2961
220 Italy 486 C 2961 2961
221 Italy 487 G 2961 2961
222 Italy 488 G 2961 2961
223 Italy 489 A 2961 2960
224 Italy 490 T 2961 2960
225 Italy 491 G 2961 2960
226 Italy 492 C 2961 2960
227 Italy 493 T 2961 2960
228 Italy 494 C 2961 2960
229 Italy 495 G 2961 2960
230 Italy 496 A 2961 2959
231 Italy 497 A G 2961 2955 Thr78Ala
232 Italy 498 C 2961 2959
233 Italy 499 T 2961 2959
234 Italy 500 G 2961 2961
235 Italy 501 C 2961 2961
236 Italy 502 A 2961 2961
237 Italy 503 C T 2961 2897 Pro80Ser
238 Italy 504 C 2961 2961
239 Italy 505 T 2954 2954
240 Italy 506 C 2954 2954
241 Italy 507 A 2954 2954
242 Italy 508 T 2954 2954
243 Italy 509 G 2954 2954
244 Italy 510 G 2954 2954
245 Italy 511 T 2953 2953
246 Italy 512 C T 2953 2952 His83Tyr
247 Italy 513 A 2953 2953
248 Italy 514 T 2953 2953
249 Italy 515 G 2953 2953
250 Italy 516 T 2953 2953
251 Italy 517 T C 2953 2952 Val84Val
252 Italy 518 A 2952 2951
253 Italy 519 T 2952 2951
254 Italy 520 G 2952 2951
255 Italy 521 G T 2952 2951 Val86Phe
256 Italy 522 T A 2952 2951 Val86Asp
257 Italy 523 T G 2952 2950 Val86Val
258 Italy 524 G 2952 2952
259 Italy 525 A 2952 2951
260 Italy 526 G T 2952 2951 Glu87Asp
261 Italy 527 C T 2952 2951 Leu88Leu
262 Italy 528 T 2952 2951
263 Italy 529 G 2952 2952
264 Italy 530 G 2952 2951
265 Italy 531 T 2952 2952
266 Italy 532 A 2952 2952
267 Italy 533 G 2952 2952
268 Italy 534 C 2952 2952
269 Italy 535 A 2952 2952
270 Italy 536 G 2952 2952
271 Italy 537 A 2952 2952
272 Italy 538 A 2952 2933
273 Italy 539 C 2952 2941
274 Italy 540 T 2952 2952
275 Italy 541 C T 2952 2950 Leu92Leu
276 Italy 542 G 2952 2952
277 Italy 543 A 2952 2952
278 Italy 544 A 2952 2947
279 Italy 545 G 2952 2952
280 Italy 546 G A 2952 2951 Gly94Asp
281 Italy 547 C 2952 2952
282 Italy 548 A 2952 2952
283 Italy 549 T 2952 2952
284 Italy 550 T C 2952 2951 Ile95Ile
285 Italy 551 C 2952 2952
286 Italy 552 A 2952 2952
287 Italy 553 G 2952 2952
288 Italy 554 T 2952 2952
289 Italy 555 A 2952 2952
290 Italy 556 C T 2952 2951 Tyr97Tyr
291 Italy 557 G 2952 2952
292 Italy 558 G 2952 2952
293 Italy 559 T 2952 2952
294 Italy 560 C 2952 2952
295 Italy 561 G 2952 2952
296 Italy 562 T 2952 2952
297 Italy 563 A T 2952 2951 Ser100Cys
298 Italy 564 G 2953 2953
299 Italy 565 T 2960 2960
300 Italy 566 G 2960 2960
301 Italy 567 G 2959 2959
302 Italy 568 T 2959 2959
303 Italy 569 G 2959 2959
304 Italy 570 A 2959 2959
305 Italy 571 G A 2959 2952 Glu102Glu
306 Italy 572 A 2959 2959
307 Italy 573 C 2959 2959
308 Italy 574 A G 2959 2958 Thr103Thr
309 Italy 575 C 2959 2959
310 Italy 576 T 2959 2959
311 Italy 577 T 2959 2959
312 Italy 578 G 2959 2959
313 Italy 579 G 2959 2959
314 Italy 580 T 2959 2959
315 Italy 581 G 2959 2959
316 Italy 582 T 2959 2959
317 Italy 583 C 2959 2959
318 Italy 584 C 2959 2959
319 Italy 585 T 2959 2959
320 Italy 586 T C 2959 2958 Leu107Leu
321 Italy 587 G 2959 2959
322 Italy 588 T 2959 2959
323 Italy 589 C 2959 2959
324 Italy 590 C 2959 2959
325 Italy 591 C 2960 2960
326 Italy 592 T 2960 2960
327 Italy 593 C T 2960 2954 His110Tyr
328 Italy 594 A 2960 2960
329 Italy 595 T 2960 2960
330 Italy 596 G T 2960 2959 Val111Leu
331 Italy 597 T 2960 2960
332 Italy 598 G 2960 2960
333 Italy 599 G A 2960 2959 Gly112Ser
334 Italy 600 G 2960 2960
335 Italy 601 C 2960 2960
336 Italy 602 G 2960 2960
337 Italy 603 A 2960 2960
338 Italy 604 A 2960 2960
339 Italy 605 A G 2960 2959 Ile114Val
340 Italy 606 T C 2960 2955 Ile114Thr
341 Italy 607 A 2960 2960
342 Italy 608 C 2960 2960
343 Italy 609 C 2960 2960
344 Italy 610 A 2960 2960
345 Italy 611 G 2960 2960
346 Italy 612 T 2960 2960
347 Italy 613 G 2959 2959
348 Italy 614 G 2959 2959
349 Italy 615 C T 2959 2958 Ala117Val
350 Italy 616 T 2959 2959
351 Italy 617 T C 2959 2958 Tyr118His
352 Italy 618 A 2959 2959
353 Italy 619 C T 2959 2957 Tyr118Tyr
354 Italy 620 C 2959 2959
355 Italy 621 G 2959 2959
356 Italy 622 C T 2959 2958 Arg119Arg
357 Italy 623 A 2959 2959
358 Italy 624 A 2959 2959
359 Italy 625 G 2959 2959
360 Italy 626 G 2959 2959
361 Italy 627 T 2959 2959
362 Italy 628 T 2959 2959
363 Italy 629 C 2959 2959
364 Italy 630 T 2959 2959
365 Italy 631 T 2959 2959
366 Italy 632 C 2959 2959
367 Italy 633 T 2959 2959
368 Italy 634 T 2959 2959
369 Italy 635 C T 2959 2953 Arg124Cys
370 Italy 636 G 2959 2959
371 Italy 637 T 2959 2959
372 Italy 638 A 2959 2959
373 Italy 639 A T 2959 2956 Lys125Met
374 Italy 640 G 2959 2959
375 Italy 641 A 2959 2959
376 Italy 642 A G 2959 2958 Asn126Ser
377 Italy 643 C 2959 2959
378 Italy 644 G 2959 2959
379 Italy 645 G 2959 2959
380 Italy 646 T 2959 2959
381 Italy 647 A 2959 2959
382 Italy 648 A 2959 2959
383 Italy 649 T 2959 2959
384 Italy 650 A 2959 2959
385 Italy 651 A 2959 2959
386 Italy 652 A 2959 2959
387 Italy 653 G 2959 2959
388 Italy 654 G 2959 2959
389 Italy 655 A 2959 2959
390 Italy 656 G 2959 2959
391 Italy 657 C 2959 2959
392 Italy 658 T 2959 2959
393 Italy 659 G 2959 2959
394 Italy 660 G 2959 2959
395 Italy 661 T 2959 2959
396 Italy 662 G 2959 2958
397 Italy 663 G 2959 2959
398 Italy 664 C 2959 2959
399 Italy 665 C 2959 2959
400 Italy 666 A 2959 2959
401 Italy 667 T C 2959 2955 His134His
402 Italy 668 A 2959 2959
403 Italy 669 G 2959 2959
404 Italy 670 T 2959 2959
405 Italy 671 T 2959 2959
406 Italy 672 A 2959 2959
407 Italy 673 C T 2960 2958 Tyr136Tyr
408 Italy 674 G 2960 2960
409 Italy 675 G 2960 2960
410 Italy 676 C 2960 2960
411 Italy 677 G 2960 2960
412 Italy 678 C 2960 2960
413 Italy 679 C A 2960 2959 Ala138Ala
414 Italy 680 G 2960 2960
415 Italy 681 A G 2960 2958 Asp139Gly
416 Italy 682 T 2960 2960
417 Italy 683 C T 2960 2954 Leu140Leu
418 Italy 684 T 2960 2960
419 Italy 685 A 2960 2960
420 Italy 686 A 2949 2949
421 Italy 687 A 2949 2949
422 Italy 688 G 2949 2949
423 Italy 689 T 2949 2949
424 Italy 690 C 2949 2949
425 Italy 691 A 2949 2949
426 Italy 692 T 2949 2949
427 Italy 693 T 2949 2949
428 Italy 694 T 2949 2949
429 Italy 695 G 2949 2949
430 Italy 696 A 2949 2949
431 Italy 697 C T 2949 2947 Asp144Asp
432 Italy 698 T 2949 2949
433 Italy 699 T 2949 2949
434 Italy 700 A 2949 2949
435 Italy 701 G 2949 2949
436 Italy 702 G 2949 2949
437 Italy 703 C T 2949 2947 Gly146Gly
438 Italy 704 G 2948 2947
439 Italy 705 A 2948 2947
440 Italy 706 C T 2948 2941 Asp147Asp
441 Italy 707 G 2948 2947
442 Italy 708 A 2948 2944
443 Italy 709 G 2948 2944
444 Italy 710 C 2948 2944
445 Italy 711 T 2948 2944
446 Italy 712 T 2948 2944
447 Italy 713 G 2947 2944
448 Italy 714 G 2947 2944
449 Italy 715 C 2947 2944
450 Italy 716 A 2947 2942
451 Italy 717 C 2947 2942
452 Italy 718 T 2947 2943
453 Italy 719 G 2947 2946
454 Italy 720 A 2947 2946
455 Italy 721 T 2947 2946
456 Italy 722 C 2947 2946
457 Italy 723 C 2947 2946
458 Italy 724 T 2947 2946
459 Italy 725 T 2946 2945
460 Italy 726 A 2945 2944
461 Italy 727 T 2945 2944
462 Italy 728 G 2945 2944
463 Italy 729 A 2945 2944
464 Italy 730 A 2945 2944
465 Italy 731 G 2945 2944
466 Italy 732 A 2945 2944
467 Italy 733 T C 2945 2941 Asp156Asp
468 Italy 734 T 2945 2944
469 Italy 735 T 2945 2944
470 Italy 736 T 2945 2945
471 Italy 737 C 2945 2945
472 Italy 738 A 2945 2945
473 Italy 739 A 2945 2945
474 Italy 740 G 2945 2945
475 Italy 741 A 2945 2945
476 Italy 742 A 2945 2945
477 Italy 743 A 2945 2945
478 Italy 744 A 2945 2945
479 Italy 745 C T 2945 2940 Asn160Asn
480 Italy 746 T 2956 2956
481 Italy 747 G 2956 2956
482 Italy 748 G 2956 2956
483 Italy 749 A 2956 2956
484 Italy 750 A 2956 2956
485 Italy 751 C 2956 2956
486 Italy 752 A 2956 2956
487 Italy 753 C 2956 2956
488 Italy 754 T 2956 2956
489 Italy 755 A 2956 2956
490 Italy 756 A 2956 2956
491 Italy 757 A 2956 2956
492 Italy 758 C T 2956 2955 His165Tyr
493 Italy 759 A 2956 2956
494 Italy 760 T 2956 2956
495 Italy 761 A 2956 2956
496 Italy 762 G 2956 2956
497 Italy 763 C T 2956 2955 Ser166Ser
498 Italy 764 A 2956 2956
499 Italy 765 G 2956 2955
500 Italy 766 T 2956 2955
501 Italy 767 G 2956 2955
502 Italy 768 G 2956 2955
503 Italy 769 T 2956 2955
504 Italy 770 G 2956 2955
505 Italy 771 T 2956 2955
506 Italy 772 T C 2956 2945 Val169Val
507 Italy 773 A 2956 2955
508 Italy 774 C A 2956 2954 Thr170Asn
509 Italy 775 C 2956 2954
510 Italy 776 C 2956 2954
511 Italy 777 G A 2956 2954 Arg171His
512 Italy 778 T 2956 2956
513 Italy 779 G 2956 2956
514 Italy 780 A 2956 2956
515 Italy 781 A 2956 2956
516 Italy 782 C 2956 2956
517 Italy 783 T 2956 2956
518 Italy 784 C 2956 2956
519 Italy 785 A 2956 2956
520 Italy 786 T 2956 2956
521 Italy 787 G 2956 2956
522 Italy 788 C 2956 2956
523 Italy 789 G 2956 2956
524 Italy 790 T 2956 2956
525 Italy 791 G A 2956 2955 Glu176Lys
526 Italy 792 A 2956 2956
527 Italy 793 G 2956 2956
528 Italy 794 C 2956 2956
529 Italy 795 T 2956 2956
530 Italy 796 T 2956 2956
531 Italy 797 A 2955 2955
532 Italy 798 A G 2955 2952 Asn178Ser
533 Italy 799 C 2955 2955
534 Italy 800 G 2955 2955
535 Italy 801 G 2955 2955
536 Italy 802 A 2955 2955
537 Italy 803 G 2955 2955
538 Italy 804 G 2955 2955
539 Italy 805 G 2955 2955