National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   540                                        
?                                            
A   21                                   1    
C   3                                        
D   27                       1                
E   54 1   2                                  
F   15         1                              
G   66           1                            
H   21             1                         1
I   9               1                        
K   27                                        
L   63         3         3                    
M   9                                   1    
N   18                       1                
P   24             1                 1        
Q   21                 1                      
R   30   1                         1          
S   30                       1       1        
T   21                       1                
V   63 2       1     3                   5    
W   3                                        
Y   15                                       2

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Ireland 266 A 1930 1930
1 Ireland 267 T 1930 1930
2 Ireland 268 G 1930 1930
3 Ireland 269 G 1930 1930
4 Ireland 270 A 1930 1930
5 Ireland 271 G 1930 1930
6 Ireland 272 A 1930 1930
7 Ireland 273 G 1930 1930
8 Ireland 274 C 1930 1930
9 Ireland 275 C 1930 1930
10 Ireland 276 T 1930 1930
11 Ireland 277 T 1930 1930
12 Ireland 278 G 1930 1930
13 Ireland 279 T 1930 1930
14 Ireland 280 C 1930 1930
15 Ireland 281 C 1930 1930
16 Ireland 282 C A 1930 1929 Pro6His
17 Ireland 283 T 1930 1930
18 Ireland 284 G 1930 1930
19 Ireland 285 G 1930 1930
20 Ireland 286 T 1930 1930
21 Ireland 287 T 1930 1930
22 Ireland 288 T 1930 1930
23 Ireland 289 C T 1930 1929 Phe8Phe
24 Ireland 290 A 1930 1930
25 Ireland 291 A 1930 1930
26 Ireland 292 C 1930 1930
27 Ireland 293 G 1930 1930
28 Ireland 294 A 1930 1930
29 Ireland 295 G 1930 1930
30 Ireland 296 A 1930 1930
31 Ireland 297 A 1930 1930
32 Ireland 298 A 1930 1930
33 Ireland 299 A 1930 1930
34 Ireland 300 C 1930 1930
35 Ireland 301 A 1930 1930
36 Ireland 302 C 1930 1930
37 Ireland 303 A 1930 1930
38 Ireland 304 C 1930 1930
39 Ireland 305 G 1930 1930
40 Ireland 306 T 1930 1930
41 Ireland 307 C 1930 1930
42 Ireland 308 C 1930 1930
43 Ireland 309 A 1930 1930
44 Ireland 310 A 1930 1930
45 Ireland 311 C T 1930 1927 Leu16Phe
46 Ireland 312 T 1930 1930
47 Ireland 313 C T 1930 1900 Leu16Leu
48 Ireland 314 A 1930 1930
49 Ireland 315 G A 1930 1929 Ser17Asn
50 Ireland 316 T 1930 1930
51 Ireland 317 T 1930 1930
52 Ireland 318 T 1930 1930
53 Ireland 319 G 1930 1930
54 Ireland 320 C 1930 1930
55 Ireland 321 C 1930 1930
56 Ireland 322 T 1930 1930
57 Ireland 323 G 1930 1930
58 Ireland 324 T 1930 1930
59 Ireland 325 T 1930 1930
60 Ireland 326 T 1930 1930
61 Ireland 327 T 1930 1930
62 Ireland 328 A 1930 1930
63 Ireland 329 C 1930 1930
64 Ireland 330 A 1930 1930
65 Ireland 331 G 1930 1930
66 Ireland 332 G 1930 1930
67 Ireland 333 T 1930 1930
68 Ireland 334 T 1930 1930
69 Ireland 335 C 1930 1930
70 Ireland 336 G 1930 1930
71 Ireland 337 C T 1930 1929 Arg24Arg
72 Ireland 338 G 1930 1930
73 Ireland 339 A 1930 1930
74 Ireland 340 C 1930 1930
75 Ireland 341 G 1930 1930
76 Ireland 342 T 1930 1930
77 Ireland 343 G T 1970 1968 Val26Val
78 Ireland 344 C T 1970 1967 Leu27Phe
79 Ireland 345 T 1970 1970
80 Ireland 346 C T 1971 1970 Leu27Leu
81 Ireland 347 G 1971 1971
82 Ireland 348 T 1971 1971
83 Ireland 349 A 1971 1971
84 Ireland 350 C 1971 1971
85 Ireland 351 G 1971 1971
86 Ireland 352 T 1971 1971
87 Ireland 353 G 1971 1971
88 Ireland 354 G 1971 1971
89 Ireland 355 C 1971 1971
90 Ireland 356 T 1971 1971
91 Ireland 357 T 1971 1971
92 Ireland 358 T 1971 1971
93 Ireland 359 G 1971 1971
94 Ireland 360 G 1971 1971
95 Ireland 361 A 1971 1971
96 Ireland 362 G A 1971 1970 Asp33Asn
97 Ireland 363 A 1971 1971
98 Ireland 364 C 1971 1971
99 Ireland 365 T 1971 1971
100 Ireland 366 C 1971 1971
101 Ireland 367 C 1971 1971
102 Ireland 368 G 1971 1971
103 Ireland 369 T 1971 1971
104 Ireland 370 G 1971 1971
105 Ireland 371 G 1971 1971
106 Ireland 372 A 1971 1971
107 Ireland 373 G 1971 1971
108 Ireland 374 G 1971 1971
109 Ireland 375 A 1971 1971
110 Ireland 376 G T 1971 1969 Glu37Asp
111 Ireland 377 G 1971 1971
112 Ireland 378 T C 1971 1969 Val38Ala
113 Ireland 379 C 1971 1971
114 Ireland 380 T 1971 1971
115 Ireland 381 T 1971 1971
116 Ireland 382 A 1971 1971
117 Ireland 383 T 1971 1971
118 Ireland 384 C 1971 1971
119 Ireland 385 A 1971 1971
120 Ireland 386 G 1970 1970
121 Ireland 387 A 1970 1970
122 Ireland 388 G 1970 1970
123 Ireland 389 G 1970 1970
124 Ireland 390 C 1970 1970
125 Ireland 391 A 1970 1970
126 Ireland 392 C 1970 1970
127 Ireland 393 G 1970 1970
128 Ireland 394 T 1970 1970
129 Ireland 395 C 1970 1970
130 Ireland 396 A 1970 1970
131 Ireland 397 A 1970 1970
132 Ireland 398 C 1970 1970
133 Ireland 399 A 1970 1970
134 Ireland 400 T 1970 1970
135 Ireland 401 C 1970 1970
136 Ireland 402 T 1970 1970
137 Ireland 403 T 1970 1970
138 Ireland 404 A 1970 1970
139 Ireland 405 A 1970 1970
140 Ireland 406 A 1970 1970
141 Ireland 407 G 1970 1970
142 Ireland 408 A 1970 1969
143 Ireland 409 T 1970 1970
144 Ireland 410 G 1970 1970
145 Ireland 411 G 1970 1970
146 Ireland 412 C 1970 1970
147 Ireland 413 A 1970 1970
148 Ireland 414 C 1970 1970
149 Ireland 415 T 1970 1970
150 Ireland 416 T 1970 1970
151 Ireland 417 G 1970 1970
152 Ireland 418 T 1970 1970
153 Ireland 419 G 1970 1970
154 Ireland 420 G 1970 1970
155 Ireland 421 C 1970 1970
156 Ireland 422 T 1970 1970
157 Ireland 423 T 1970 1970
158 Ireland 424 A 1970 1970
159 Ireland 425 G 1970 1970
160 Ireland 426 T 1970 1970
161 Ireland 427 A 1970 1970
162 Ireland 428 G 1970 1970
163 Ireland 429 A C 1970 1969 Glu55Ala
164 Ireland 430 A 1970 1969
165 Ireland 431 G A 1970 1968 Val56Ile
166 Ireland 432 T 1970 1969
167 Ireland 433 T 1970 1969
168 Ireland 434 G 1970 1969
169 Ireland 435 A 1970 1969
170 Ireland 436 A 1970 1969
171 Ireland 437 A 1970 1969
172 Ireland 438 A 1970 1969
173 Ireland 439 A 1970 1969
174 Ireland 440 G 1970 1969
175 Ireland 441 G 1970 1969
176 Ireland 442 C 1970 1969
177 Ireland 443 G 1970 1969
178 Ireland 444 T 1970 1969
179 Ireland 445 T C 1970 1398 Val60Val
180 Ireland 446 T 1971 1971
181 Ireland 447 T 1971 1971
182 Ireland 448 G 1971 1971
183 Ireland 449 C 1971 1971
184 Ireland 450 C 1971 1971
185 Ireland 451 T 1971 1971
186 Ireland 452 C 1971 1971
187 Ireland 453 A 1971 1971
188 Ireland 454 A 1971 1971
189 Ireland 455 C 1971 1971
190 Ireland 456 T 1971 1971
191 Ireland 457 T 1971 1971
192 Ireland 458 G 1971 1971
193 Ireland 459 A 1971 1971
194 Ireland 460 A 1971 1971
195 Ireland 461 C A 1971 1969 Gln66Lys
196 Ireland 462 A 1971 1971
197 Ireland 463 G 1971 1971
198 Ireland 464 C 1971 1971
199 Ireland 465 C 1971 1971
200 Ireland 466 C 1971 1971
201 Ireland 467 T 1971 1971
202 Ireland 468 A 1971 1971
203 Ireland 469 T C 1971 1969 Tyr68Tyr
204 Ireland 470 G 1971 1971
205 Ireland 471 T 1971 1971
206 Ireland 472 G A 1971 1970 Val69Val
207 Ireland 473 T 1971 1971
208 Ireland 474 T 1971 1971
209 Ireland 475 C 1971 1971
210 Ireland 476 A 1971 1971
211 Ireland 477 T 1971 1971
212 Ireland 478 C T 1971 1969 Ile71Ile
213 Ireland 479 A 1971 1971
214 Ireland 480 A 1971 1971
215 Ireland 481 A 1971 1971
216 Ireland 482 C 1971 1971
217 Ireland 483 G 1971 1971
218 Ireland 484 T 1971 1971
219 Ireland 485 T 1971 1971
220 Ireland 486 C 1971 1971
221 Ireland 487 G A 1971 1969 Ser74Ser
222 Ireland 488 G 1971 1971
223 Ireland 489 A 1971 1971
224 Ireland 490 T 1971 1971
225 Ireland 491 G 1971 1971
226 Ireland 492 C 1971 1971
227 Ireland 493 T 1971 1971
228 Ireland 494 C 1971 1971
229 Ireland 495 G 1971 1971
230 Ireland 496 A 1971 1971
231 Ireland 497 A 1971 1971
232 Ireland 498 C 1971 1971
233 Ireland 499 T 1971 1971
234 Ireland 500 G 1971 1971
235 Ireland 501 C 1971 1971
236 Ireland 502 A 1971 1971
237 Ireland 503 C T 1971 1967 Pro80Ser
238 Ireland 504 C 1971 1971
239 Ireland 505 T 1964 1964
240 Ireland 506 C 1964 1964
241 Ireland 507 A 1964 1964
242 Ireland 508 T 1964 1964
243 Ireland 509 G 1964 1964
244 Ireland 510 G 1964 1964
245 Ireland 511 T 1964 1964
246 Ireland 512 C 1964 1964
247 Ireland 513 A 1964 1964
248 Ireland 514 T C 1964 1962 His83His
249 Ireland 515 G A 1964 1962 Val84Ile
250 Ireland 516 T 1964 1964
251 Ireland 517 T 1964 1964
252 Ireland 518 A G 1964 1961 Met85Val
253 Ireland 519 T 1964 1962
254 Ireland 520 G 1964 1962
255 Ireland 521 G 1964 1962
256 Ireland 522 T 1964 1964
257 Ireland 523 T 1964 1963
258 Ireland 524 G 1964 1964
259 Ireland 525 A 1964 1964
260 Ireland 526 G T 1964 1960 Glu87Asp
261 Ireland 527 C 1964 1964
262 Ireland 528 T 1964 1964
263 Ireland 529 G 1964 1964
264 Ireland 530 G 1964 1964
265 Ireland 531 T 1964 1964
266 Ireland 532 A 1964 1964
267 Ireland 533 G 1964 1964
268 Ireland 534 C 1964 1964
269 Ireland 535 A 1964 1964
270 Ireland 536 G 1964 1964
271 Ireland 537 A 1964 1964
272 Ireland 538 A 1964 1964
273 Ireland 539 C T 1964 1961 Leu92Phe
274 Ireland 540 T 1964 1964
275 Ireland 541 C 1964 1964
276 Ireland 542 G 1964 1964
277 Ireland 543 A 1964 1964
278 Ireland 544 A 1964 1964
279 Ireland 545 G 1964 1964
280 Ireland 546 G 1964 1964
281 Ireland 547 C 1964 1964
282 Ireland 548 A 1964 1964
283 Ireland 549 T 1964 1964
284 Ireland 550 T 1964 1964
285 Ireland 551 C 1964 1964
286 Ireland 552 A 1964 1964
287 Ireland 553 G 1964 1964
288 Ireland 554 T 1964 1964
289 Ireland 555 A 1964 1964
290 Ireland 556 C 1964 1964
291 Ireland 557 G 1964 1964
292 Ireland 558 G 1964 1964
293 Ireland 559 T 1964 1964
294 Ireland 560 C T 1964 1963 Arg99Cys
295 Ireland 561 G 1964 1964
296 Ireland 562 T 1964 1964
297 Ireland 563 A 1964 1964
298 Ireland 564 G 1964 1964
299 Ireland 565 T 1971 1971
300 Ireland 566 G 1971 1971
301 Ireland 567 G 1971 1971
302 Ireland 568 T 1971 1971
303 Ireland 569 G 1971 1971
304 Ireland 570 A 1971 1971
305 Ireland 571 G 1971 1971
306 Ireland 572 A 1971 1971
307 Ireland 573 C 1971 1971
308 Ireland 574 A 1971 1971
309 Ireland 575 C 1971 1971
310 Ireland 576 T 1971 1971
311 Ireland 577 T 1971 1971
312 Ireland 578 G 1971 1971
313 Ireland 579 G 1971 1971
314 Ireland 580 T 1971 1971
315 Ireland 581 G 1971 1971
316 Ireland 582 T 1971 1971
317 Ireland 583 C 1971 1971
318 Ireland 584 C 1971 1971
319 Ireland 585 T 1971 1971
320 Ireland 586 T 1971 1971
321 Ireland 587 G 1971 1971
322 Ireland 588 T 1971 1971
323 Ireland 589 C T 1971 1967 Val108Val
324 Ireland 590 C 1971 1971
325 Ireland 591 C 1971 1971
326 Ireland 592 T 1971 1971
327 Ireland 593 C T 1971 1951 His110Tyr
328 Ireland 594 A 1971 1971
329 Ireland 595 T 1971 1971
330 Ireland 596 G 1971 1971
331 Ireland 597 T 1971 1971
332 Ireland 598 G 1971 1971
333 Ireland 599 G 1971 1971
334 Ireland 600 G 1971 1971
335 Ireland 601 C 1971 1971
336 Ireland 602 G 1971 1971
337 Ireland 603 A 1971 1971
338 Ireland 604 A 1971 1971
339 Ireland 605 A 1971 1971
340 Ireland 606 T 1971 1971
341 Ireland 607 A 1971 1971
342 Ireland 608 C 1971 1971
343 Ireland 609 C 1971 1971
344 Ireland 610 A 1971 1971
345 Ireland 611 G 1971 1971
346 Ireland 612 T 1971 1971
347 Ireland 613 G 1971 1971
348 Ireland 614 G 1971 1971
349 Ireland 615 C T 1971 1970 Ala117Val
350 Ireland 616 T 1971 1971
351 Ireland 617 T 1971 1971
352 Ireland 618 A 1971 1971
353 Ireland 619 C 1971 1971
354 Ireland 620 C 1971 1971
355 Ireland 621 G 1971 1971
356 Ireland 622 C 1971 1971
357 Ireland 623 A 1971 1971
358 Ireland 624 A 1971 1971
359 Ireland 625 G 1971 1971
360 Ireland 626 G T 1971 1970 Val121Phe
361 Ireland 627 T 1971 1971
362 Ireland 628 T 1971 1971
363 Ireland 629 C 1971 1971
364 Ireland 630 T 1971 1971
365 Ireland 631 T 1971 1971
366 Ireland 632 C 1971 1971
367 Ireland 633 T 1971 1971
368 Ireland 634 T 1971 1971
369 Ireland 635 C 1971 1969
370 Ireland 636 G 1971 1971
371 Ireland 637 T 1971 1971
372 Ireland 638 A 1971 1971
373 Ireland 639 A 1971 1971
374 Ireland 640 G 1971 1971
375 Ireland 641 A 1971 1971
376 Ireland 642 A 1971 1971
377 Ireland 643 C 1971 1971
378 Ireland 644 G 1971 1971
379 Ireland 645 G 1971 1971
380 Ireland 646 T 1971 1971
381 Ireland 647 A 1971 1971
382 Ireland 648 A 1971 1971
383 Ireland 649 T 1971 1971
384 Ireland 650 A 1971 1971
385 Ireland 651 A 1971 1971
386 Ireland 652 A 1971 1971
387 Ireland 653 G 1971 1971
388 Ireland 654 G 1971 1971
389 Ireland 655 A 1971 1971
390 Ireland 656 G 1971 1971
391 Ireland 657 C 1971 1971
392 Ireland 658 T 1971 1971
393 Ireland 659 G 1971 1971
394 Ireland 660 G 1971 1971
395 Ireland 661 T 1971 1971
396 Ireland 662 G 1971 1971
397 Ireland 663 G 1971 1971
398 Ireland 664 C 1971 1971
399 Ireland 665 C 1973 1973
400 Ireland 666 A 1973 1973
401 Ireland 667 T 1973 1973
402 Ireland 668 A 1973 1973
403 Ireland 669 G 1973 1973
404 Ireland 670 T 1973 1973
405 Ireland 671 T 1973 1973
406 Ireland 672 A 1973 1973
407 Ireland 673 C T 1973 1971 Tyr136Tyr
408 Ireland 674 G 1973 1973
409 Ireland 675 G 1973 1973
410 Ireland 676 C 1973 1973
411 Ireland 677 G 1973 1972
412 Ireland 678 C 1973 1973
413 Ireland 679 C 1973 1973
414 Ireland 680 G 1973 1973
415 Ireland 681 A 1973 1973
416 Ireland 682 T 1973 1973
417 Ireland 683 C T 1973 1966 Leu140Leu
418 Ireland 684 T 1973 1973
419 Ireland 685 A 1973 1973
420 Ireland 686 A 1968 1966
421 Ireland 687 A 1968 1966
422 Ireland 688 G 1968 1966
423 Ireland 689 T 1968 1966
424 Ireland 690 C 1968 1966
425 Ireland 691 A 1968 1966
426 Ireland 692 T 1968 1966
427 Ireland 693 T 1968 1966
428 Ireland 694 T 1968 1966
429 Ireland 695 G 1968 1968
430 Ireland 696 A 1968 1968
431 Ireland 697 C 1968 1968
432 Ireland 698 T 1968 1968
433 Ireland 699 T 1968 1968
434 Ireland 700 A 1968 1968
435 Ireland 701 G 1968 1968
436 Ireland 702 G 1968 1968
437 Ireland 703 C T 1968 1967 Gly146Gly
438 Ireland 704 G 1968 1968
439 Ireland 705 A 1968 1968
440 Ireland 706 C 1968 1968
441 Ireland 707 G 1968 1968
442 Ireland 708 A 1968 1968
443 Ireland 709 G 1968 1968
444 Ireland 710 C 1968 1968
445 Ireland 711 T 1968 1968
446 Ireland 712 T 1968 1968
447 Ireland 713 G 1968 1968
448 Ireland 714 G 1968 1968
449 Ireland 715 C 1968 1968
450 Ireland 716 A 1968 1968
451 Ireland 717 C A 1968 1967 Thr151Asn
452 Ireland 718 T 1968 1968
453 Ireland 719 G 1968 1968
454 Ireland 720 A 1968 1968
455 Ireland 721 T 1968 1968
456 Ireland 722 C 1968 1968
457 Ireland 723 C 1968 1968
458 Ireland 724 T 1968 1968
459 Ireland 725 T 1968 1968
460 Ireland 726 A 1968 1968
461 Ireland 727 T 1968 1968
462 Ireland 728 G 1968 1968
463 Ireland 729 A 1968 1968
464 Ireland 730 A 1968 1968
465 Ireland 731 G 1968 1968
466 Ireland 732 A 1968 1968
467 Ireland 733 T 1968 1968
468 Ireland 734 T 1968 1968
469 Ireland 735 T 1968 1968
470 Ireland 736 T 1968 1968
471 Ireland 737 C 1968 1968
472 Ireland 738 A 1968 1968
473 Ireland 739 A 1968 1968
474 Ireland 740 G 1968 1968
475 Ireland 741 A 1968 1968
476 Ireland 742 A 1968 1968
477 Ireland 743 A 1968 1968
478 Ireland 744 A 1968 1968
479 Ireland 745 C T 1968 1956 Asn160Asn
480 Ireland 746 T 1973 1973
481 Ireland 747 G 1973 1973
482 Ireland 748 G 1973 1973
483 Ireland 749 A 1973 1973
484 Ireland 750 A 1973 1973
485 Ireland 751 C 1973 1973
486 Ireland 752 A 1973 1973
487 Ireland 753 C 1973 1973
488 Ireland 754 T 1973 1973
489 Ireland 755 A 1973 1973
490 Ireland 756 A 1973 1973
491 Ireland 757 A 1973 1973
492 Ireland 758 C 1973 1973
493 Ireland 759 A 1973 1973
494 Ireland 760 T 1973 1973
495 Ireland 761 A 1973 1973
496 Ireland 762 G 1973 1973
497 Ireland 763 C 1973 1973
498 Ireland 764 A 1973 1973
499 Ireland 765 G 1973 1973
500 Ireland 766 T 1973 1973
501 Ireland 767 G 1973 1973
502 Ireland 768 G 1973 1973
503 Ireland 769 T 1973 1973
504 Ireland 770 G A 1973 1972 Val169Ile
505 Ireland 771 T C 1973 1972 Val169Ala
506 Ireland 772 T C 1973 1970 Val169Val
507 Ireland 773 A 1973 1973
508 Ireland 774 C 1973 1973
509 Ireland 775 C 1973 1973
510 Ireland 776 C 1973 1973
511 Ireland 777 G 1973 1973
512 Ireland 778 T 1973 1973
513 Ireland 779 G 1973 1973
514 Ireland 780 A 1973 1973
515 Ireland 781 A 1973 1973
516 Ireland 782 C 1973 1973
517 Ireland 783 T 1973 1973
518 Ireland 784 C 1973 1973
519 Ireland 785 A 1973 1973
520 Ireland 786 T 1973 1973
521 Ireland 787 G 1973 1973
522 Ireland 788 C 1973 1973
523 Ireland 789 G 1973 1973
524 Ireland 790 T 1973 1973
525 Ireland 791 G 1973 1973
526 Ireland 792 A 1973 1973
527 Ireland 793 G 1973 1973
528 Ireland 794 C 1973 1973
529 Ireland 795 T 1973 1973
530 Ireland 796 T 1973 1973
531 Ireland 797 A 1973 1973
532 Ireland 798 A 1973 1973
533 Ireland 799 C 1973 1973
534 Ireland 800 G 1973 1973
535 Ireland 801 G 1973 1973
536 Ireland 802 A 1973 1973
537 Ireland 803 G 1973 1973
538 Ireland 804 G 1973 1973
539 Ireland 805 G 1972 1972