National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   540                                        
?                                            
A   21                                        
C   3                                        
D   27                                        
E   54                                        
F   15                                        
G   66                                        
H   21                                        
I   9                                        
K   27                                        
L   63                   1                    
M   9                                        
N   18                                        
P   24                                        
Q   21                                        
R   30                                        
S   30                                        
T   21                                        
V   63                                        
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Iraq 266 A 31 31
1 Iraq 267 T 31 31
2 Iraq 268 G 31 31
3 Iraq 269 G 31 31
4 Iraq 270 A 31 31
5 Iraq 271 G 31 31
6 Iraq 272 A 31 31
7 Iraq 273 G 31 31
8 Iraq 274 C 31 31
9 Iraq 275 C 31 31
10 Iraq 276 T 31 31
11 Iraq 277 T 31 31
12 Iraq 278 G 31 31
13 Iraq 279 T 31 31
14 Iraq 280 C 31 31
15 Iraq 281 C 31 31
16 Iraq 282 C 31 31
17 Iraq 283 T 31 31
18 Iraq 284 G 31 31
19 Iraq 285 G 31 31
20 Iraq 286 T 31 31
21 Iraq 287 T 31 31
22 Iraq 288 T 31 31
23 Iraq 289 C 31 31
24 Iraq 290 A 31 31
25 Iraq 291 A 31 31
26 Iraq 292 C 31 31
27 Iraq 293 G 31 31
28 Iraq 294 A 31 31
29 Iraq 295 G 31 31
30 Iraq 296 A 31 31
31 Iraq 297 A 31 31
32 Iraq 298 A 31 31
33 Iraq 299 A 31 31
34 Iraq 300 C 31 31
35 Iraq 301 A 31 31
36 Iraq 302 C 31 31
37 Iraq 303 A 31 31
38 Iraq 304 C 31 31
39 Iraq 305 G 31 31
40 Iraq 306 T 31 31
41 Iraq 307 C 31 31
42 Iraq 308 C 31 31
43 Iraq 309 A 31 31
44 Iraq 310 A 31 31
45 Iraq 311 C 31 31
46 Iraq 312 T 31 31
47 Iraq 313 C 31 31
48 Iraq 314 A 31 31
49 Iraq 315 G 31 31
50 Iraq 316 T 31 31
51 Iraq 317 T 31 31
52 Iraq 318 T 31 31
53 Iraq 319 G 31 31
54 Iraq 320 C 31 31
55 Iraq 321 C 31 31
56 Iraq 322 T 31 31
57 Iraq 323 G 31 31
58 Iraq 324 T 31 31
59 Iraq 325 T 31 31
60 Iraq 326 T 31 31
61 Iraq 327 T 31 31
62 Iraq 328 A 31 31
63 Iraq 329 C 31 31
64 Iraq 330 A 31 31
65 Iraq 331 G 31 31
66 Iraq 332 G 31 31
67 Iraq 333 T 31 31
68 Iraq 334 T 31 31
69 Iraq 335 C 31 31
70 Iraq 336 G 31 31
71 Iraq 337 C 31 31
72 Iraq 338 G 31 31
73 Iraq 339 A 31 31
74 Iraq 340 C 31 31
75 Iraq 341 G 31 31
76 Iraq 342 T 31 31
77 Iraq 343 G 31 31
78 Iraq 344 C 31 31
79 Iraq 345 T 31 31
80 Iraq 346 C 31 31
81 Iraq 347 G 31 31
82 Iraq 348 T 31 31
83 Iraq 349 A 31 31
84 Iraq 350 C 31 31
85 Iraq 351 G 31 31
86 Iraq 352 T 31 31
87 Iraq 353 G 31 31
88 Iraq 354 G 31 31
89 Iraq 355 C 31 31
90 Iraq 356 T 31 31
91 Iraq 357 T 31 31
92 Iraq 358 T 31 31
93 Iraq 359 G 31 31
94 Iraq 360 G 31 31
95 Iraq 361 A 31 31
96 Iraq 362 G 31 31
97 Iraq 363 A 31 31
98 Iraq 364 C 31 31
99 Iraq 365 T 31 31
100 Iraq 366 C 31 31
101 Iraq 367 C 31 31
102 Iraq 368 G 31 31
103 Iraq 369 T 31 31
104 Iraq 370 G 31 31
105 Iraq 371 G 31 31
106 Iraq 372 A 31 31
107 Iraq 373 G 31 31
108 Iraq 374 G 31 31
109 Iraq 375 A 31 31
110 Iraq 376 G 31 31
111 Iraq 377 G 31 31
112 Iraq 378 T 31 31
113 Iraq 379 C 31 31
114 Iraq 380 T 31 31
115 Iraq 381 T 31 31
116 Iraq 382 A 31 31
117 Iraq 383 T 31 31
118 Iraq 384 C 31 31
119 Iraq 385 A 31 31
120 Iraq 386 G 31 31
121 Iraq 387 A 31 31
122 Iraq 388 G 31 31
123 Iraq 389 G 31 31
124 Iraq 390 C 31 31
125 Iraq 391 A 31 31
126 Iraq 392 C 31 31
127 Iraq 393 G 31 31
128 Iraq 394 T 31 31
129 Iraq 395 C 31 31
130 Iraq 396 A 31 31
131 Iraq 397 A 31 31
132 Iraq 398 C 31 31
133 Iraq 399 A 31 31
134 Iraq 400 T 31 31
135 Iraq 401 C 31 31
136 Iraq 402 T 31 31
137 Iraq 403 T 31 31
138 Iraq 404 A 31 31
139 Iraq 405 A 31 31
140 Iraq 406 A 31 31
141 Iraq 407 G 31 31
142 Iraq 408 A 31 31
143 Iraq 409 T 31 31
144 Iraq 410 G 31 31
145 Iraq 411 G 31 31
146 Iraq 412 C 31 31
147 Iraq 413 A 31 31
148 Iraq 414 C 31 31
149 Iraq 415 T 31 31
150 Iraq 416 T 31 31
151 Iraq 417 G 31 31
152 Iraq 418 T 31 31
153 Iraq 419 G 31 31
154 Iraq 420 G 31 31
155 Iraq 421 C 31 31
156 Iraq 422 T 31 31
157 Iraq 423 T 31 31
158 Iraq 424 A 31 31
159 Iraq 425 G 31 31
160 Iraq 426 T 31 31
161 Iraq 427 A 31 31
162 Iraq 428 G 31 31
163 Iraq 429 A 31 31
164 Iraq 430 A 31 31
165 Iraq 431 G 31 31
166 Iraq 432 T 31 31
167 Iraq 433 T 31 31
168 Iraq 434 G 31 31
169 Iraq 435 A 31 31
170 Iraq 436 A 31 31
171 Iraq 437 A 31 31
172 Iraq 438 A 31 31
173 Iraq 439 A 31 31
174 Iraq 440 G 31 31
175 Iraq 441 G 31 31
176 Iraq 442 C 31 31
177 Iraq 443 G 31 31
178 Iraq 444 T 31 31
179 Iraq 445 T 31 31
180 Iraq 446 T 31 31
181 Iraq 447 T 31 31
182 Iraq 448 G 31 31
183 Iraq 449 C 31 31
184 Iraq 450 C 31 31
185 Iraq 451 T 31 31
186 Iraq 452 C 31 31
187 Iraq 453 A 31 31
188 Iraq 454 A 31 31
189 Iraq 455 C 31 31
190 Iraq 456 T 31 31
191 Iraq 457 T 31 31
192 Iraq 458 G 31 31
193 Iraq 459 A 31 31
194 Iraq 460 A 31 31
195 Iraq 461 C 31 31
196 Iraq 462 A 31 31
197 Iraq 463 G 31 31
198 Iraq 464 C 31 31
199 Iraq 465 C 31 31
200 Iraq 466 C 31 31
201 Iraq 467 T 31 31
202 Iraq 468 A 31 31
203 Iraq 469 T 31 31
204 Iraq 470 G 31 31
205 Iraq 471 T 31 31
206 Iraq 472 G 31 31
207 Iraq 473 T 31 31
208 Iraq 474 T 31 31
209 Iraq 475 C 31 31
210 Iraq 476 A 31 31
211 Iraq 477 T 31 31
212 Iraq 478 C 31 31
213 Iraq 479 A 31 31
214 Iraq 480 A 31 31
215 Iraq 481 A 31 31
216 Iraq 482 C 31 31
217 Iraq 483 G 31 31
218 Iraq 484 T 31 31
219 Iraq 485 T 31 31
220 Iraq 486 C 31 31
221 Iraq 487 G 31 31
222 Iraq 488 G 31 31
223 Iraq 489 A 31 31
224 Iraq 490 T 31 31
225 Iraq 491 G 31 31
226 Iraq 492 C 31 31
227 Iraq 493 T 31 31
228 Iraq 494 C 31 31
229 Iraq 495 G 31 31
230 Iraq 496 A 31 31
231 Iraq 497 A 31 31
232 Iraq 498 C 31 31
233 Iraq 499 T 31 31
234 Iraq 500 G 31 31
235 Iraq 501 C 31 31
236 Iraq 502 A 31 31
237 Iraq 503 C 31 31
238 Iraq 504 C 31 31
239 Iraq 505 T 31 31
240 Iraq 506 C 31 31
241 Iraq 507 A 31 31
242 Iraq 508 T 31 31
243 Iraq 509 G 31 31
244 Iraq 510 G 31 31
245 Iraq 511 T 31 31
246 Iraq 512 C 31 31
247 Iraq 513 A 31 31
248 Iraq 514 T 31 31
249 Iraq 515 G 31 31
250 Iraq 516 T 31 31
251 Iraq 517 T 31 31
252 Iraq 518 A 31 31
253 Iraq 519 T 31 31
254 Iraq 520 G 31 31
255 Iraq 521 G 31 31
256 Iraq 522 T 31 31
257 Iraq 523 T 31 31
258 Iraq 524 G 31 31
259 Iraq 525 A 31 31
260 Iraq 526 G 31 31
261 Iraq 527 C T 31 30 Leu88Leu
262 Iraq 528 T 31 31
263 Iraq 529 G 31 31
264 Iraq 530 G 31 31
265 Iraq 531 T 31 31
266 Iraq 532 A 31 31
267 Iraq 533 G 31 31
268 Iraq 534 C 31 31
269 Iraq 535 A 31 31
270 Iraq 536 G 31 31
271 Iraq 537 A 31 31
272 Iraq 538 A 31 31
273 Iraq 539 C 31 31
274 Iraq 540 T 31 31
275 Iraq 541 C 31 31
276 Iraq 542 G 31 31
277 Iraq 543 A 31 31
278 Iraq 544 A 31 31
279 Iraq 545 G 31 31
280 Iraq 546 G 31 31
281 Iraq 547 C 31 31
282 Iraq 548 A 31 31
283 Iraq 549 T 31 31
284 Iraq 550 T 31 31
285 Iraq 551 C 31 31
286 Iraq 552 A 31 31
287 Iraq 553 G 31 31
288 Iraq 554 T 31 31
289 Iraq 555 A 31 31
290 Iraq 556 C 31 31
291 Iraq 557 G 31 31
292 Iraq 558 G 31 31
293 Iraq 559 T 31 31
294 Iraq 560 C 31 31
295 Iraq 561 G 31 31
296 Iraq 562 T 31 31
297 Iraq 563 A 31 31
298 Iraq 564 G 31 31
299 Iraq 565 T 31 31
300 Iraq 566 G 31 31
301 Iraq 567 G 31 31
302 Iraq 568 T 31 31
303 Iraq 569 G 31 31
304 Iraq 570 A 31 31
305 Iraq 571 G 31 31
306 Iraq 572 A 31 31
307 Iraq 573 C 31 31
308 Iraq 574 A 31 31
309 Iraq 575 C 31 31
310 Iraq 576 T 31 31
311 Iraq 577 T 31 31
312 Iraq 578 G 31 31
313 Iraq 579 G 31 31
314 Iraq 580 T 31 31
315 Iraq 581 G 31 31
316 Iraq 582 T 31 31
317 Iraq 583 C 31 31
318 Iraq 584 C 31 31
319 Iraq 585 T 31 31
320 Iraq 586 T 31 31
321 Iraq 587 G 31 31
322 Iraq 588 T 31 31
323 Iraq 589 C 31 31
324 Iraq 590 C 31 31
325 Iraq 591 C 31 31
326 Iraq 592 T 31 31
327 Iraq 593 C 31 31
328 Iraq 594 A 31 31
329 Iraq 595 T 31 31
330 Iraq 596 G 31 31
331 Iraq 597 T 31 31
332 Iraq 598 G 31 31
333 Iraq 599 G 31 31
334 Iraq 600 G 31 31
335 Iraq 601 C 31 31
336 Iraq 602 G 31 31
337 Iraq 603 A 31 31
338 Iraq 604 A 31 31
339 Iraq 605 A 31 31
340 Iraq 606 T 31 31
341 Iraq 607 A 31 31
342 Iraq 608 C 31 31
343 Iraq 609 C 31 31
344 Iraq 610 A 31 31
345 Iraq 611 G 31 31
346 Iraq 612 T 31 31
347 Iraq 613 G 31 31
348 Iraq 614 G 31 31
349 Iraq 615 C 31 31
350 Iraq 616 T 31 31
351 Iraq 617 T 31 31
352 Iraq 618 A 31 31
353 Iraq 619 C 31 31
354 Iraq 620 C 31 31
355 Iraq 621 G 31 31
356 Iraq 622 C 31 31
357 Iraq 623 A 31 31
358 Iraq 624 A 31 31
359 Iraq 625 G 31 31
360 Iraq 626 G 31 31
361 Iraq 627 T 31 31
362 Iraq 628 T 31 31
363 Iraq 629 C 31 31
364 Iraq 630 T 31 31
365 Iraq 631 T 31 31
366 Iraq 632 C 31 31
367 Iraq 633 T 31 31
368 Iraq 634 T 31 31
369 Iraq 635 C 31 31
370 Iraq 636 G 31 31
371 Iraq 637 T 31 31
372 Iraq 638 A 31 31
373 Iraq 639 A 31 31
374 Iraq 640 G 31 31
375 Iraq 641 A 31 31
376 Iraq 642 A 31 31
377 Iraq 643 C 31 31
378 Iraq 644 G 31 31
379 Iraq 645 G 31 31
380 Iraq 646 T 31 31
381 Iraq 647 A 31 31
382 Iraq 648 A 31 31
383 Iraq 649 T 31 31
384 Iraq 650 A 31 31
385 Iraq 651 A 31 31
386 Iraq 652 A 31 31
387 Iraq 653 G 31 31
388 Iraq 654 G 31 31
389 Iraq 655 A 31 31
390 Iraq 656 G 31 31
391 Iraq 657 C 31 31
392 Iraq 658 T 31 31
393 Iraq 659 G 31 31
394 Iraq 660 G 31 31
395 Iraq 661 T 31 31
396 Iraq 662 G 31 31
397 Iraq 663 G 31 31
398 Iraq 664 C 31 31
399 Iraq 665 C 31 31
400 Iraq 666 A 31 31
401 Iraq 667 T 31 31
402 Iraq 668 A 31 31
403 Iraq 669 G 31 31
404 Iraq 670 T 31 31
405 Iraq 671 T 31 31
406 Iraq 672 A 31 31
407 Iraq 673 C 31 31
408 Iraq 674 G 31 31
409 Iraq 675 G 31 31
410 Iraq 676 C 31 31
411 Iraq 677 G 31 31
412 Iraq 678 C 31 31
413 Iraq 679 C 31 31
414 Iraq 680 G 31 31
415 Iraq 681 A 31 31
416 Iraq 682 T 31 31
417 Iraq 683 C 31 31
418 Iraq 684 T 31 31
419 Iraq 685 A 31 31
420 Iraq 686 A 31 31
421 Iraq 687 A 31 31
422 Iraq 688 G 31 31
423 Iraq 689 T 31 31
424 Iraq 690 C 31 31
425 Iraq 691 A 31 31
426 Iraq 692 T 31 31
427 Iraq 693 T 31 31
428 Iraq 694 T 31 31
429 Iraq 695 G 31 31
430 Iraq 696 A 31 31
431 Iraq 697 C 31 31
432 Iraq 698 T 31 31
433 Iraq 699 T 31 31
434 Iraq 700 A 31 31
435 Iraq 701 G 31 31
436 Iraq 702 G 31 31
437 Iraq 703 C 31 31
438 Iraq 704 G 31 31
439 Iraq 705 A 31 31
440 Iraq 706 C 31 31
441 Iraq 707 G 31 31
442 Iraq 708 A 31 31
443 Iraq 709 G 31 31
444 Iraq 710 C 31 31
445 Iraq 711 T 31 31
446 Iraq 712 T 31 31
447 Iraq 713 G 31 31
448 Iraq 714 G 31 31
449 Iraq 715 C 31 31
450 Iraq 716 A 31 31
451 Iraq 717 C 31 31
452 Iraq 718 T 31 31
453 Iraq 719 G 31 31
454 Iraq 720 A 31 31
455 Iraq 721 T 31 31
456 Iraq 722 C 31 31
457 Iraq 723 C 31 31
458 Iraq 724 T 31 31
459 Iraq 725 T 31 31
460 Iraq 726 A 31 31
461 Iraq 727 T 31 31
462 Iraq 728 G 31 31
463 Iraq 729 A 31 31
464 Iraq 730 A 31 31
465 Iraq 731 G 31 31
466 Iraq 732 A 31 31
467 Iraq 733 T 31 31
468 Iraq 734 T 31 31
469 Iraq 735 T 31 31
470 Iraq 736 T 31 31
471 Iraq 737 C 31 31
472 Iraq 738 A 31 31
473 Iraq 739 A 31 31
474 Iraq 740 G 31 31
475 Iraq 741 A 31 31
476 Iraq 742 A 31 31
477 Iraq 743 A 31 31
478 Iraq 744 A 31 31
479 Iraq 745 C 31 31
480 Iraq 746 T 31 31
481 Iraq 747 G 31 31
482 Iraq 748 G 31 31
483 Iraq 749 A 31 31
484 Iraq 750 A 31 31
485 Iraq 751 C 31 31
486 Iraq 752 A 31 31
487 Iraq 753 C 31 31
488 Iraq 754 T 31 31
489 Iraq 755 A 31 31
490 Iraq 756 A 31 31
491 Iraq 757 A 31 31
492 Iraq 758 C 31 31
493 Iraq 759 A 31 31
494 Iraq 760 T 31 31
495 Iraq 761 A 31 31
496 Iraq 762 G 31 31
497 Iraq 763 C 31 31
498 Iraq 764 A 31 31
499 Iraq 765 G 31 31
500 Iraq 766 T 31 31
501 Iraq 767 G 31 31
502 Iraq 768 G 31 31
503 Iraq 769 T 31 31
504 Iraq 770 G 31 31
505 Iraq 771 T 31 31
506 Iraq 772 T 31 31
507 Iraq 773 A 31 31
508 Iraq 774 C 31 31
509 Iraq 775 C 31 31
510 Iraq 776 C 31 31
511 Iraq 777 G 31 31
512 Iraq 778 T 31 31
513 Iraq 779 G 31 31
514 Iraq 780 A 31 31
515 Iraq 781 A 31 31
516 Iraq 782 C 31 31
517 Iraq 783 T 31 31
518 Iraq 784 C 31 31
519 Iraq 785 A 31 31
520 Iraq 786 T 31 31
521 Iraq 787 G 31 31
522 Iraq 788 C 31 31
523 Iraq 789 G 31 31
524 Iraq 790 T 31 31
525 Iraq 791 G 31 31
526 Iraq 792 A 31 31
527 Iraq 793 G 31 31
528 Iraq 794 C 31 31
529 Iraq 795 T 31 31
530 Iraq 796 T 31 31
531 Iraq 797 A 31 31
532 Iraq 798 A 31 31
533 Iraq 799 C 31 31
534 Iraq 800 G 31 31
535 Iraq 801 G 31 31
536 Iraq 802 A 31 31
537 Iraq 803 G 31 31
538 Iraq 804 G 31 31
539 Iraq 805 G 31 31