National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   540                                        
?                                            
A   21                                        
C   3                                        
D   27                                        
E   54     1 1                                
F   15                                        
G   66 1 1       1                            
H   21     1                   1              
I   9                     1                  
K   27                                        
L   63                                        
M   9                                        
N   18                                        
P   24 1                 1                    
Q   21                                        
R   30                             1          
S   30                       1                
T   21                                        
V   63 2         1                       1    
W   3                   1                    
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Iran 266 A 36 36
1 Iran 267 T 36 36
2 Iran 268 G 36 36
3 Iran 269 G 36 36
4 Iran 270 A 36 36
5 Iran 271 G 36 36
6 Iran 272 A 37 37
7 Iran 273 G 37 37
8 Iran 274 C 37 37
9 Iran 275 C 37 37
10 Iran 276 T 37 37
11 Iran 277 T 37 37
12 Iran 278 G 37 37
13 Iran 279 T 37 37
14 Iran 280 C 37 37
15 Iran 281 C 37 37
16 Iran 282 C 37 37
17 Iran 283 T 37 37
18 Iran 284 G T 37 36 Gly7Cys
19 Iran 285 G C 37 36 Gly7Ala
20 Iran 286 T 37 37
21 Iran 287 T 37 37
22 Iran 288 T 37 37
23 Iran 289 C 37 37
24 Iran 290 A 37 37
25 Iran 291 A 37 37
26 Iran 292 C 37 37
27 Iran 293 G 37 37
28 Iran 294 A 37 37
29 Iran 295 G 37 37
30 Iran 296 A 37 37
31 Iran 297 A 37 37
32 Iran 298 A 37 37
33 Iran 299 A 37 37
34 Iran 300 C 37 37
35 Iran 301 A 37 37
36 Iran 302 C 37 37
37 Iran 303 A 37 37
38 Iran 304 C 37 37
39 Iran 305 G 37 37
40 Iran 306 T 37 37
41 Iran 307 C 37 37
42 Iran 308 C 37 37
43 Iran 309 A 37 37
44 Iran 310 A 37 37
45 Iran 311 C 37 37
46 Iran 312 T 37 37
47 Iran 313 C 37 37
48 Iran 314 A 37 37
49 Iran 315 G 37 37
50 Iran 316 T 37 37
51 Iran 317 T 37 37
52 Iran 318 T 37 37
53 Iran 319 G 37 37
54 Iran 320 C 37 37
55 Iran 321 C 37 37
56 Iran 322 T 37 36
57 Iran 323 G 37 37
58 Iran 324 T 37 37
59 Iran 325 T 37 37
60 Iran 326 T 37 37
61 Iran 327 T 37 37
62 Iran 328 A 37 37
63 Iran 329 C 37 37
64 Iran 330 A 37 37
65 Iran 331 G 37 37
66 Iran 332 G 37 37
67 Iran 333 T 37 37
68 Iran 334 T 37 37
69 Iran 335 C 37 37
70 Iran 336 G 37 37
71 Iran 337 C 37 37
72 Iran 338 G 37 37
73 Iran 339 A 37 37
74 Iran 340 C 37 37
75 Iran 341 G 37 37
76 Iran 342 T 37 37
77 Iran 343 G 37 37
78 Iran 344 C 37 37
79 Iran 345 T 37 37
80 Iran 346 C 37 37
81 Iran 347 G 37 37
82 Iran 348 T 37 37
83 Iran 349 A 37 37
84 Iran 350 C 37 37
85 Iran 351 G 37 37
86 Iran 352 T 37 37
87 Iran 353 G 37 37
88 Iran 354 G 37 37
89 Iran 355 C 37 37
90 Iran 356 T 37 37
91 Iran 357 T 37 37
92 Iran 358 T 37 37
93 Iran 359 G 37 37
94 Iran 360 G 37 37
95 Iran 361 A 37 37
96 Iran 362 G 37 37
97 Iran 363 A 37 37
98 Iran 364 C 37 37
99 Iran 365 T 37 37
100 Iran 366 C 37 37
101 Iran 367 C 37 37
102 Iran 368 G 37 37
103 Iran 369 T 37 37
104 Iran 370 G 37 37
105 Iran 371 G 37 37
106 Iran 372 A 37 37
107 Iran 373 G 37 37
108 Iran 374 G 37 37
109 Iran 375 A 37 37
110 Iran 376 G T 37 36 Glu37Asp
111 Iran 377 G 37 37
112 Iran 378 T 37 37
113 Iran 379 C 37 37
114 Iran 380 T 37 37
115 Iran 381 T 37 37
116 Iran 382 A 37 37
117 Iran 383 T 37 37
118 Iran 384 C 37 37
119 Iran 385 A 37 37
120 Iran 386 G 37 37
121 Iran 387 A 37 37
122 Iran 388 G 37 37
123 Iran 389 G 37 37
124 Iran 390 C 37 37
125 Iran 391 A 37 37
126 Iran 392 C 37 37
127 Iran 393 G 37 37
128 Iran 394 T 37 37
129 Iran 395 C 37 37
130 Iran 396 A 37 37
131 Iran 397 A 37 37
132 Iran 398 C 37 37
133 Iran 399 A 37 37
134 Iran 400 T 37 37
135 Iran 401 C 37 37
136 Iran 402 T 37 37
137 Iran 403 T 37 37
138 Iran 404 A 37 37
139 Iran 405 A 37 37
140 Iran 406 A 37 37
141 Iran 407 G 37 37
142 Iran 408 A 37 37
143 Iran 409 T 37 37
144 Iran 410 G 37 37
145 Iran 411 G 37 37
146 Iran 412 C 37 37
147 Iran 413 A 37 37
148 Iran 414 C 37 37
149 Iran 415 T 37 37
150 Iran 416 T 37 37
151 Iran 417 G 37 37
152 Iran 418 T 37 37
153 Iran 419 G 37 37
154 Iran 420 G 37 37
155 Iran 421 C 37 37
156 Iran 422 T 37 37
157 Iran 423 T 37 37
158 Iran 424 A 37 37
159 Iran 425 G 37 37
160 Iran 426 T C 37 36 Val54Ala
161 Iran 427 A 37 37
162 Iran 428 G 37 37
163 Iran 429 A 37 37
164 Iran 430 A 37 37
165 Iran 431 G 37 37
166 Iran 432 T 37 37
167 Iran 433 T 37 37
168 Iran 434 G 37 37
169 Iran 435 A 37 37
170 Iran 436 A 37 37
171 Iran 437 A 37 37
172 Iran 438 A 37 37
173 Iran 439 A 37 37
174 Iran 440 G 37 37
175 Iran 441 G 37 37
176 Iran 442 C 37 37
177 Iran 443 G 37 37
178 Iran 444 T 37 37
179 Iran 445 T 37 37
180 Iran 446 T 37 37
181 Iran 447 T 37 37
182 Iran 448 G 37 37
183 Iran 449 C 37 37
184 Iran 450 C 37 37
185 Iran 451 T 37 37
186 Iran 452 C 37 37
187 Iran 453 A 37 37
188 Iran 454 A 37 37
189 Iran 455 C 37 37
190 Iran 456 T 37 37
191 Iran 457 T 37 37
192 Iran 458 G 37 37
193 Iran 459 A 37 37
194 Iran 460 A 37 37
195 Iran 461 C 37 37
196 Iran 462 A 37 37
197 Iran 463 G 37 37
198 Iran 464 C 37 37
199 Iran 465 C 37 37
200 Iran 466 C 37 37
201 Iran 467 T 37 37
202 Iran 468 A 37 37
203 Iran 469 T 37 37
204 Iran 470 G 37 37
205 Iran 471 T 37 37
206 Iran 472 G 37 37
207 Iran 473 T 37 37
208 Iran 474 T 37 37
209 Iran 475 C 37 37
210 Iran 476 A 37 37
211 Iran 477 T 37 37
212 Iran 478 C 37 37
213 Iran 479 A 37 37
214 Iran 480 A 37 37
215 Iran 481 A 37 37
216 Iran 482 C 37 37
217 Iran 483 G 37 37
218 Iran 484 T 37 37
219 Iran 485 T 37 37
220 Iran 486 C 37 37
221 Iran 487 G 37 37
222 Iran 488 G 37 37
223 Iran 489 A 37 37
224 Iran 490 T 37 37
225 Iran 491 G 37 37
226 Iran 492 C 37 37
227 Iran 493 T 37 37
228 Iran 494 C 37 37
229 Iran 495 G 37 37
230 Iran 496 A G 37 36 Arg77Arg
231 Iran 497 A 37 37
232 Iran 498 C 37 37
233 Iran 499 T 37 37
234 Iran 500 G 37 37
235 Iran 501 C 37 37
236 Iran 502 A 40 40
237 Iran 503 C 40 40
238 Iran 504 C 40 40
239 Iran 505 T 37 37
240 Iran 506 C 37 37
241 Iran 507 A 37 37
242 Iran 508 T 37 37
243 Iran 509 G 37 37
244 Iran 510 G 37 37
245 Iran 511 T 37 37
246 Iran 512 C G 37 36 His83Asp
247 Iran 513 A C 37 36 His83Pro
248 Iran 514 T 37 37
249 Iran 515 G 37 37
250 Iran 516 T 37 37
251 Iran 517 T 37 37
252 Iran 518 A 37 37
253 Iran 519 T 37 37
254 Iran 520 G 37 37
255 Iran 521 G 37 37
256 Iran 522 T 37 37
257 Iran 523 T 37 37
258 Iran 524 G 37 37
259 Iran 525 A 37 37
260 Iran 526 G 37 37
261 Iran 527 C 37 37
262 Iran 528 T 37 37
263 Iran 529 G 37 37
264 Iran 530 G 37 37
265 Iran 531 T 37 37
266 Iran 532 A 37 37
267 Iran 533 G 37 37
268 Iran 534 C 37 37
269 Iran 535 A 37 37
270 Iran 536 G 37 37
271 Iran 537 A 37 37
272 Iran 538 A 37 37
273 Iran 539 C 37 37
274 Iran 540 T 37 37
275 Iran 541 C 37 37
276 Iran 542 G 37 37
277 Iran 543 A 37 37
278 Iran 544 A 37 37
279 Iran 545 G 37 37
280 Iran 546 G 37 37
281 Iran 547 C 37 37
282 Iran 548 A 37 37
283 Iran 549 T 37 37
284 Iran 550 T 37 37
285 Iran 551 C 37 37
286 Iran 552 A 37 37
287 Iran 553 G 37 37
288 Iran 554 T 37 37
289 Iran 555 A 37 37
290 Iran 556 C 37 37
291 Iran 557 G 37 37
292 Iran 558 G 37 37
293 Iran 559 T 37 37
294 Iran 560 C 37 37
295 Iran 561 G 37 37
296 Iran 562 T 37 37
297 Iran 563 A 37 37
298 Iran 564 G 37 37
299 Iran 565 T 40 40
300 Iran 566 G 40 40
301 Iran 567 G 40 40
302 Iran 568 T 40 40
303 Iran 569 G 40 40
304 Iran 570 A 40 40
305 Iran 571 G 40 40
306 Iran 572 A 40 40
307 Iran 573 C 40 40
308 Iran 574 A 40 40
309 Iran 575 C 40 40
310 Iran 576 T 40 40
311 Iran 577 T 40 40
312 Iran 578 G 40 40
313 Iran 579 G 40 40
314 Iran 580 T 40 40
315 Iran 581 G 40 40
316 Iran 582 T G 40 39 Val106Gly
317 Iran 583 C T 40 39 Val106Val
318 Iran 584 C 40 40
319 Iran 585 T 40 40
320 Iran 586 T 40 40
321 Iran 587 G 40 40
322 Iran 588 T 40 40
323 Iran 589 C 40 40
324 Iran 590 C 40 40
325 Iran 591 C 40 40
326 Iran 592 T 40 40
327 Iran 593 C 40 40
328 Iran 594 A 40 40
329 Iran 595 T 40 40
330 Iran 596 G 40 40
331 Iran 597 T 40 40
332 Iran 598 G 40 40
333 Iran 599 G 40 40
334 Iran 600 G 40 40
335 Iran 601 C 40 40
336 Iran 602 G 40 40
337 Iran 603 A 40 40
338 Iran 604 A G 40 37 Glu113Glu
339 Iran 605 A 40 40
340 Iran 606 T 40 40
341 Iran 607 A G 40 39 Ile114Met
342 Iran 608 C G 40 39 Pro115Ala
343 Iran 609 C T 40 39 Pro115Leu
344 Iran 610 A 40 40
345 Iran 611 G 40 40
346 Iran 612 T C 40 39 Val116Ala
347 Iran 613 G 40 40
348 Iran 614 G 40 40
349 Iran 615 C 40 40
350 Iran 616 T 40 40
351 Iran 617 T 40 40
352 Iran 618 A 40 40
353 Iran 619 C 40 40
354 Iran 620 C 40 40
355 Iran 621 G 40 40
356 Iran 622 C 40 40
357 Iran 623 A 40 40
358 Iran 624 A 40 40
359 Iran 625 G 40 40
360 Iran 626 G 40 40
361 Iran 627 T 40 40
362 Iran 628 T 40 40
363 Iran 629 C 40 40
364 Iran 630 T 40 40
365 Iran 631 T 40 40
366 Iran 632 C 40 40
367 Iran 633 T 40 40
368 Iran 634 T 40 40
369 Iran 635 C 40 40
370 Iran 636 G 40 40
371 Iran 637 T 40 40
372 Iran 638 A 40 40
373 Iran 639 A 40 40
374 Iran 640 G 40 40
375 Iran 641 A 40 40
376 Iran 642 A 40 40
377 Iran 643 C 40 40
378 Iran 644 G 40 40
379 Iran 645 G 40 40
380 Iran 646 T 40 40
381 Iran 647 A 40 40
382 Iran 648 A 40 40
383 Iran 649 T 40 40
384 Iran 650 A 40 40
385 Iran 651 A 40 40
386 Iran 652 A 40 40
387 Iran 653 G 40 40
388 Iran 654 G 40 40
389 Iran 655 A 40 40
390 Iran 656 G 40 40
391 Iran 657 C 40 40
392 Iran 658 T 40 40
393 Iran 659 G 40 40
394 Iran 660 G 40 40
395 Iran 661 T 40 40
396 Iran 662 G 40 40
397 Iran 663 G 40 40
398 Iran 664 C T 40 39 Gly133Gly
399 Iran 665 C 40 40
400 Iran 666 A 40 40
401 Iran 667 T 40 40
402 Iran 668 A 40 40
403 Iran 669 G A 40 39 Ser135Asn
404 Iran 670 T 40 40
405 Iran 671 T 40 40
406 Iran 672 A 40 40
407 Iran 673 C 40 40
408 Iran 674 G 40 40
409 Iran 675 G 40 40
410 Iran 676 C 40 40
411 Iran 677 G 40 40
412 Iran 678 C 40 40
413 Iran 679 C 40 40
414 Iran 680 G 40 40
415 Iran 681 A 40 40
416 Iran 682 T 40 40
417 Iran 683 C 40 40
418 Iran 684 T 40 40
419 Iran 685 A 40 40
420 Iran 686 A 40 40
421 Iran 687 A 40 40
422 Iran 688 G 40 40
423 Iran 689 T 40 40
424 Iran 690 C 40 40
425 Iran 691 A 40 40
426 Iran 692 T 40 40
427 Iran 693 T 40 40
428 Iran 694 T 40 40
429 Iran 695 G 40 40
430 Iran 696 A 40 40
431 Iran 697 C 40 40
432 Iran 698 T 40 40
433 Iran 699 T 40 40
434 Iran 700 A 40 40
435 Iran 701 G 40 40
436 Iran 702 G 40 40
437 Iran 703 C 40 40
438 Iran 704 G 40 40
439 Iran 705 A 40 40
440 Iran 706 C 40 40
441 Iran 707 G 40 40
442 Iran 708 A 40 40
443 Iran 709 G 40 40
444 Iran 710 C 40 40
445 Iran 711 T 40 40
446 Iran 712 T 40 40
447 Iran 713 G 40 40
448 Iran 714 G 40 40
449 Iran 715 C 40 40
450 Iran 716 A 40 40
451 Iran 717 C 40 40
452 Iran 718 T 40 40
453 Iran 719 G 40 40
454 Iran 720 A 40 40
455 Iran 721 T 40 40
456 Iran 722 C 40 40
457 Iran 723 C 40 40
458 Iran 724 T 40 40
459 Iran 725 T 40 40
460 Iran 726 A 40 40
461 Iran 727 T 40 40
462 Iran 728 G 40 40
463 Iran 729 A 40 40
464 Iran 730 A 40 40
465 Iran 731 G 40 40
466 Iran 732 A 40 40
467 Iran 733 T 40 40
468 Iran 734 T 40 40
469 Iran 735 T 40 40
470 Iran 736 T 40 40
471 Iran 737 C 40 40
472 Iran 738 A 40 40
473 Iran 739 A 40 40
474 Iran 740 G 40 40
475 Iran 741 A 40 40
476 Iran 742 A 40 40
477 Iran 743 A 40 40
478 Iran 744 A 40 40
479 Iran 745 C 40 40
480 Iran 746 T 40 40
481 Iran 747 G T 40 38 Trp161Leu
482 Iran 748 G 40 40
483 Iran 749 A 40 40
484 Iran 750 A 40 40
485 Iran 751 C 40 40
486 Iran 752 A 40 40
487 Iran 753 C 40 40
488 Iran 754 T 40 40
489 Iran 755 A 40 40
490 Iran 756 A 40 40
491 Iran 757 A 40 40
492 Iran 758 C 40 40
493 Iran 759 A 40 40
494 Iran 760 T 40 40
495 Iran 761 A 40 40
496 Iran 762 G 40 40
497 Iran 763 C 40 40
498 Iran 764 A 40 40
499 Iran 765 G 40 40
500 Iran 766 T 40 40
501 Iran 767 G 40 40
502 Iran 768 G 40 40
503 Iran 769 T 40 40
504 Iran 770 G 40 40
505 Iran 771 T 40 40
506 Iran 772 T 40 40
507 Iran 773 A 40 40
508 Iran 774 C 40 40
509 Iran 775 C 40 40
510 Iran 776 C 40 40
511 Iran 777 G 40 40
512 Iran 778 T 40 40
513 Iran 779 G 40 40
514 Iran 780 A 40 40
515 Iran 781 A 40 40
516 Iran 782 C 40 40
517 Iran 783 T 40 40
518 Iran 784 C 40 40
519 Iran 785 A 40 40
520 Iran 786 T 40 40
521 Iran 787 G 40 40
522 Iran 788 C 40 40
523 Iran 789 G 40 40
524 Iran 790 T 40 40
525 Iran 791 G 40 40
526 Iran 792 A 40 40
527 Iran 793 G 40 40
528 Iran 794 C 40 40
529 Iran 795 T 40 40
530 Iran 796 T 40 40
531 Iran 797 A 40 40
532 Iran 798 A 40 40
533 Iran 799 C 40 40
534 Iran 800 G 40 40
535 Iran 801 G 40 40
536 Iran 802 A 40 40
537 Iran 803 G 40 40
538 Iran 804 G 40 40
539 Iran 805 G 40 40