National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*                                              
-     539                                        
?                                              
A     21 4     1                         1 3    
C     3   1                                    
D     27     5 2   2           1           1   1
E     54 1   2 5   3     1                      
F     15               1   1                    
G     66 1 7 3     7                   3   1    
H     21             3         1 1 1 2         4
I     9               1                 1      
K     27                 1     1     1          
L 2   62         6   1 1   12 1   2   1          
M     9               1                   1    
N     18                       4                
P     24             1     3     2     1        
Q     21                           1            
R     30   2         1               3 1        
S     30 2 2       2   1         1     4 1   1  
T     21 2             2               1 2      
V     63 3       4     4   3 1             9    
W     3   1                                    
Y 1   15     2                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 India 266 A 4675 4675
1 India 267 T 4675 4675
2 India 268 G 4676 4675
3 India 269 G 4676 4675
4 India 270 A G 4677 4673 Glu2Gly
5 India 271 G 4677 4676
6 India 272 A 4677 4677
7 India 273 G 4680 4679
8 India 274 C T 4681 4678 Ser3Ser
9 India 275 C 4681 4678
10 India 276 T C 4681 4677 Leu4Pro
11 India 277 T 4681 4678
12 India 278 G 4681 4681
13 India 279 T 4682 4682
14 India 280 C A,T 4682 4677 Val5Val-p.Val5Val
15 India 281 C 4682 4681
16 India 282 C T 4683 4679 Pro6Leu
17 India 283 T 4683 4677
18 India 284 G 4683 4679
19 India 285 G 4683 4682
20 India 286 T 4683 4681
21 India 287 T 4683 4681
22 India 288 T 4683 4679
23 India 289 C 4683 4679
24 India 290 A 4683 4677
25 India 291 A 4683 4678
26 India 292 C T 4683 4677 Asn9Asn
27 India 293 G 4683 4679
28 India 294 A 4683 4677
29 India 295 G 4683 4675
30 India 296 A 4684 4674
31 India 297 A 4684 4679
32 India 298 A 4684 4678
33 India 299 A 4685 4677
34 India 300 C T 4685 4675 Thr12Ile
35 India 301 A 4686 4677
36 India 302 C T 4686 4677 His13Tyr
37 India 303 A 4686 4677
38 India 304 C T,A 4687 4672 His13Gln-p.His13His
39 India 305 G 4689 4684
40 India 306 T 4690 4684
41 India 307 C 4690 4683
42 India 308 C 4690 4686
43 India 309 A 4690 4685
44 India 310 A 4691 4685
45 India 311 C 4691 4685
46 India 312 T G,C,A 4691 4680 Leu16Pro-p.Leu16His
47 India 313 C T 4692 3471 Leu16Leu
48 India 314 A 4692 4682
49 India 315 G 4694 4686
50 India 316 T 4696 4687
51 India 317 T 4701 4693
52 India 318 T 4701 4695
53 India 319 G A 4701 4690 Leu18Leu
54 India 320 C 4723 4712
55 India 321 C 4728 4724
56 India 322 T 4728 4726
57 India 323 G 4728 4726
58 India 324 T 4728 4726
59 India 325 T 4728 4726
60 India 326 T 4728 4726
61 India 327 T 4728 4726
62 India 328 A 4728 4726
63 India 329 C 4729 4728
64 India 330 A 4729 4728
65 India 331 G 4733 4732
66 India 332 G 4733 4732
67 India 333 T 4734 4731
68 India 334 T 4734 4731
69 India 335 C T,A 4734 4723 Arg24Cys-p.Arg24Ser
70 India 336 G 4734 4731
71 India 337 C T 4734 4725 Arg24Arg
72 India 338 G 4734 4729
73 India 339 A 4734 4730
74 India 340 C 4734 4731
75 India 341 G 4735 4733
76 India 342 T 4735 4733
77 India 343 G T 4735 4730 Val26Val
78 India 344 C T 4735 4731 Leu27Phe
79 India 345 T 4735 4734
80 India 346 C T 4735 4729 Leu27Leu
81 India 347 G A 4735 4728 Val28Ile
82 India 348 T 4735 4733
83 India 349 A 4735 4733
84 India 350 C 4735 4733
85 India 351 G 4735 4733
86 India 352 T 4735 4733
87 India 353 G T,A 4735 4730 Gly30Cys-p.Gly30Ser
88 India 354 G 4735 4732
89 India 355 C T 4735 4730 Gly30Gly
90 India 356 T 4735 4733
91 India 357 T 4735 4733
92 India 358 T 4736 4734
93 India 359 G 4736 4734
94 India 360 G 4736 4734
95 India 361 A G 4736 4732 Gly32Gly
96 India 362 G A 4736 4729 Asp33Asn
97 India 363 A 4736 4733
98 India 364 C 4737 4734
99 India 365 T 4737 4734
100 India 366 C 4737 4734
101 India 367 C 4737 4735
102 India 368 G T 4737 4733 Val35Leu
103 India 369 T C 4737 4734 Val35Ala
104 India 370 G T 4737 4731 Val35Val
105 India 371 G 4737 4734
106 India 372 A 4737 4735
107 India 373 G A 4737 4732 Glu36Glu
108 India 374 G 4737 4735
109 India 375 A G 4737 4732 Glu37Gly
110 India 376 G A,T 4737 4660 Glu37Asp-p.Glu37Glu
111 India 377 G T 4737 4735 Val38Phe
112 India 378 T 4737 4737
113 India 379 C G 4737 4719 Val38Val
114 India 380 T 4737 4736
115 India 381 T G 4737 4734 Leu39*
116 India 382 A G 4737 4735 Leu39Leu
117 India 383 T A,G 4737 4719 Ser40Thr-p.Ser40Ala
118 India 384 C 4737 4736
119 India 385 A 4737 4736
120 India 386 G 4737 4736
121 India 387 A 4737 4736
122 India 388 G A 4737 4734 Glu41Glu
123 India 389 G 4737 4736
124 India 390 C 4736 4735
125 India 391 A 4736 4735
126 India 392 C 4736 4735
127 India 393 G A 4736 4734 Arg43His
128 India 394 T C 4736 4734 Arg43Arg
129 India 395 C 4736 4734
130 India 396 A 4737 4737
131 India 397 A 4737 4737
132 India 398 C T 4737 4736 His45Tyr
133 India 399 A 4737 4737
134 India 400 T C 4737 4736 His45His
135 India 401 C A 4737 4736 Leu46Ile
136 India 402 T 4737 4737
137 India 403 T 4737 4737
138 India 404 A 4737 4737
139 India 405 A 4737 4737
140 India 406 A 4737 4737
141 India 407 G 4737 4737
142 India 408 A G 4737 4728 Asp48Gly
143 India 409 T 4737 4736
144 India 410 G T 4737 4734 Gly49Cys
145 India 411 G A 4737 4735 Gly49Asp
146 India 412 C 4737 4736
147 India 413 A 4737 4736
148 India 414 C 4737 4737
149 India 415 T 4737 4737
150 India 416 T 4737 4737
151 India 417 G 4737 4737
152 India 418 T C 4737 4735 Cys51Cys
153 India 419 G T 4737 4735 Gly52Cys
154 India 420 G 4737 4736
155 India 421 C 4737 4737
156 India 422 T 4737 4737
157 India 423 T 4737 4737
158 India 424 A 4737 4737
159 India 425 G 4737 4737
160 India 426 T C 4737 4736 Val54Ala
161 India 427 A 4737 4737
162 India 428 G 4737 4732
163 India 429 A 4737 4737
164 India 430 A 4737 4736
165 India 431 G 4737 4736
166 India 432 T 4737 4736
167 India 433 T 4737 4736
168 India 434 G 4737 4735
169 India 435 A 4737 4732
170 India 436 A 4737 4736
171 India 437 A 4737 4736
172 India 438 A G 4737 4734 Lys58Arg
173 India 439 A 4737 4736
174 India 440 G 4737 4736
175 India 441 G 4737 4736
176 India 442 C 4737 4736
177 India 443 G A 4737 4732 Val60Ile
178 India 444 T 4737 4735
179 India 445 T C 4737 4732 Val60Val
180 India 446 T A 4737 4735 Leu61Met
181 India 447 T A 4737 4735 Leu61*
182 India 448 G 4737 4736
183 India 449 C 4736 4735
184 India 450 C A 4736 4732 Pro62His
185 India 451 T 4737 4736
186 India 452 C 4737 4735
187 India 453 A 4737 4736
188 India 454 A 4737 4736
189 India 455 C T 4737 4735 Leu64Phe
190 India 456 T 4737 4734
191 India 457 T 4736 4735
192 India 458 G 4736 4731
193 India 459 A 4736 4735
194 India 460 A G 4736 4734 Glu65Glu
195 India 461 C 4736 4734
196 India 462 A 4736 4733
197 India 463 G 4736 4733
198 India 464 C 4736 4732
199 India 465 C 4736 4733
200 India 466 C T 4736 4731 Pro67Pro
201 India 467 T 4736 4733
202 India 468 A 4736 4733
203 India 469 T G 4737 4733 Tyr68*
204 India 470 G 4737 4734
205 India 471 T 4737 4735
206 India 472 G 4737 4735
207 India 473 T 4737 4735
208 India 474 T 4737 4734
209 India 475 C A 4737 4733 Phe70Leu
210 India 476 A 4737 4736
211 India 477 T 4737 4736
212 India 478 C T 4737 4735 Ile71Ile
213 India 479 A 4737 4735
214 India 480 A 4737 4734
215 India 481 A 4737 4734
216 India 482 C 4737 4728
217 India 483 G 4737 4727
218 India 484 T 4737 4729
219 India 485 T G 4737 4730 Ser74Ala
220 India 486 C G 4737 4727 Ser74Trp
221 India 487 G T,A 4737 4706 Ser74Ser-p.Ser74Ser
222 India 488 G 4737 4731
223 India 489 A 4737 4719
224 India 490 T C 4737 4710 Asp75Asp
225 India 491 G 4737 4716
226 India 492 C T 4737 4716 Ala76Val
227 India 493 T C 4737 4716 Ala76Ala
228 India 494 C 4737 4716
229 India 495 G 4736 4716
230 India 496 A 4736 4714
231 India 497 A G 4736 4713 Thr78Ala
232 India 498 C T 4736 4714 Thr78Ile
233 India 499 T G 4736 4716 Thr78Thr
234 India 500 G A 4737 4723 Ala79Thr
235 India 501 C A 4737 4722 Ala79Glu
236 India 502 A G 4737 4723 Ala79Ala
237 India 503 C T 4737 4725 Pro80Ser
238 India 504 C T 4737 4724 Pro80Leu
239 India 505 T 4730 4719
240 India 506 C T 4730 4714 His81Tyr
241 India 507 A C 4729 4717 His81Pro
242 India 508 T 4729 4718
243 India 509 G T 4729 4716 Gly82Cys
244 India 510 G T,A 4729 4711 Gly82Val-p.Gly82Asp
245 India 511 T G 4729 4714 Gly82Gly
246 India 512 C A 4730 4722 His83Asn
247 India 513 A G 4730 4721 His83Arg
248 India 514 T 4730 4723
249 India 515 G T 4730 4722 Val84Phe
250 India 516 T 4730 4723
251 India 517 T 4730 4723
252 India 518 A G 4730 4721 Met85Val
253 India 519 T 4730 4722
254 India 520 G T 4730 4722 Met85Ile
255 India 521 G T,A 4730 4722 Val86Phe-p.Val86Ile
256 India 522 T 4730 4725
257 India 523 T 4730 4727
258 India 524 G 4730 4728
259 India 525 A 4730 4728
260 India 526 G T 4730 4726 Glu87Asp
261 India 527 C T 4730 4718 Leu88Leu
262 India 528 T 4730 4728
263 India 529 G T 4730 4726 Leu88Leu
264 India 530 G 4730 4728
265 India 531 T 4730 4728
266 India 532 A 4730 4728
267 India 533 G 4730 4728
268 India 534 C 4730 4728
269 India 535 A 4730 4728
270 India 536 G 4730 4727
271 India 537 A 4730 4725
272 India 538 A 4730 4726
273 India 539 C T 4730 4728 Leu92Phe
274 India 540 T 4730 4729
275 India 541 C T 4730 4727 Leu92Leu
276 India 542 G 4730 4729
277 India 543 A 4730 4729
278 India 544 A 4730 4729
279 India 545 G 4730 4728
280 India 546 G 4730 4729
281 India 547 C 4731 4730
282 India 548 A 4731 4728
283 India 549 T 4731 4728
284 India 550 T 4731 4728
285 India 551 C 4731 4727
286 India 552 A 4731 4728
287 India 553 G A 4731 4728 Gln96Gln
288 India 554 T 4731 4729
289 India 555 A 4731 4729
290 India 556 C 4731 4729
291 India 557 G 4730 4728
292 India 558 G 4730 4728
293 India 559 T 4730 4729
294 India 560 C 4730 4730
295 India 561 G 4730 4729
296 India 562 T 4730 4730
297 India 563 A T 4730 4728 Ser100Cys
298 India 564 G 4731 4730
299 India 565 T 4738 4738
300 India 566 G 4738 4737
301 India 567 G 4738 4738
302 India 568 T 4738 4737
303 India 569 G 4738 4737
304 India 570 A C 4737 4735 Glu102Ala
305 India 571 G 4737 4737
306 India 572 A 4737 4737
307 India 573 C 4737 4737
308 India 574 A G 4737 4731 Thr103Thr
309 India 575 C 4737 4736
310 India 576 T 4737 4737
311 India 577 T 4737 4737
312 India 578 G 4737 4736
313 India 579 G 4737 4736
314 India 580 T 4737 4737
315 India 581 G 4737 4737
316 India 582 T 4737 4737
317 India 583 C T 4737 4735 Val106Val
318 India 584 C T 4737 4735 Leu107Phe
319 India 585 T 4737 4737
320 India 586 T 4737 4737
321 India 587 G 4737 4737
322 India 588 T 4737 4736
323 India 589 C T,A 4737 4735 Val108Val-p.Val108Val
324 India 590 C 4737 4736
325 India 591 C 4737 4737
326 India 592 T C 4737 4733 Pro109Pro
327 India 593 C T 4737 4729 His110Tyr
328 India 594 A G 4737 4736 His110Arg
329 India 595 T 4737 4737
330 India 596 G T 4737 4731 Val111Leu
331 India 597 T 4737 4736
332 India 598 G 4737 4735
333 India 599 G T,A 4737 4734 Gly112Cys-p.Gly112Ser
334 India 600 G A 4737 4735 Gly112Asp
335 India 601 C 4737 4737
336 India 602 G 4737 4736
337 India 603 A G 4737 4736 Glu113Gly
338 India 604 A 4737 4737
339 India 605 A 4737 4736
340 India 606 T C 4737 4725 Ile114Thr
341 India 607 A 4737 4735
342 India 608 C 4737 4735
343 India 609 C 4737 4735
344 India 610 A 4737 4734
345 India 611 G T,A 4737 4733 Val116Leu-p.Val116Met
346 India 612 T 4737 4735
347 India 613 G 4737 4735
348 India 614 G 4737 4735
349 India 615 C 4737 4734
350 India 616 T 4737 4734
351 India 617 T G 4737 4733 Tyr118Asp
352 India 618 A 4737 4734
353 India 619 C 4737 4734
354 India 620 C 4737 4734
355 India 621 G 4737 4734
356 India 622 C A 4737 4733 Arg119Arg
357 India 623 A 4737 4734
358 India 624 A 4737 4734
359 India 625 G T 4737 4733 Lys120Asn
360 India 626 G A 4736 4727 Val121Ile
361 India 627 T 4736 4731
362 India 628 T 4736 4733
363 India 629 C T 4736 4731 Leu122Phe
364 India 630 T 4736 4733
365 India 631 T C 4736 4731 Leu122Leu
366 India 632 C T 4736 4731 Leu123Phe
367 India 633 T 4736 4732
368 India 634 T 4736 4733
369 India 635 C T 4736 4718 Arg124Cys
370 India 636 G 4736 4733
371 India 637 T 4736 4733
372 India 638 A 4736 4733
373 India 639 A 4736 4733
374 India 640 G A 4736 4730 Lys125Lys
375 India 641 A 4736 4732
376 India 642 A 4736 4734
377 India 643 C T 4736 4731 Asn126Asn
378 India 644 G 4736 4735
379 India 645 G 4736 4735
380 India 646 T 4737 4735
381 India 647 A 4737 4736
382 India 648 A 4737 4736
383 India 649 T 4737 4736
384 India 650 A 4737 4736
385 India 651 A 4737 4735
386 India 652 A 4737 4734
387 India 653 G 4737 4737
388 India 654 G 4737 4737
389 India 655 A 4737 4737
390 India 656 G 4737 4737
391 India 657 C T 4737 4734 Ala131Val
392 India 658 T C 4737 4726 Ala131Ala
393 India 659 G 4737 4735
394 India 660 G 4737 4735
395 India 661 T 4737 4735
396 India 662 G T 4737 4735 Gly133Cys
397 India 663 G 4737 4736
398 India 664 C T 4736 4718 Gly133Gly
399 India 665 C 4736 4734
400 India 666 A 4736 4735
401 India 667 T 4736 4735
402 India 668 A G 4736 4734 Ser135Gly
403 India 669 G 4736 4735
404 India 670 T 4736 4735
405 India 671 T G 4736 4734 Tyr136Asp
406 India 672 A 4736 4735
407 India 673 C 4736 4733
408 India 674 G T 4736 4733 Gly137Cys
409 India 675 G 4736 4734
410 India 676 C T 4736 4732 Gly137Gly
411 India 677 G 4736 4735
412 India 678 C T 4736 4734 Ala138Val
413 India 679 C T 4736 4731 Ala138Ala
414 India 680 G 4736 4735
415 India 681 A 4736 4736
416 India 682 T C 4736 4729 Asp139Asp
417 India 683 C T 4736 4727 Leu140Leu
418 India 684 T 4736 4735
419 India 685 A 4736 4736
420 India 686 A 4733 4731
421 India 687 A 4733 4731
422 India 688 G 4733 4731
423 India 689 T C 4733 4730 Ser142Pro
424 India 690 C 4732 4729
425 India 691 A T 4732 4729 Ser142Ser
426 India 692 T A 4732 4728 Phe143Ile
427 India 693 T 4732 4729
428 India 694 T 4732 4729
429 India 695 G T 4732 4730 Asp144Tyr
430 India 696 A 4732 4731
431 India 697 C T,A 4732 4727 Asp144Glu-p.Asp144Asp
432 India 698 T 4732 4730
433 India 699 T 4732 4729
434 India 700 A G 4732 4729 Leu145Leu
435 India 701 G A 4732 4729 Gly146Ser
436 India 702 G 4732 4729
437 India 703 C A 4732 4728 Gly146Gly
438 India 704 G 4732 4727
439 India 705 A G 4732 4728 Asp147Gly
440 India 706 C T,A 4732 4727 Asp147Glu-p.Asp147Asp
441 India 707 G A 4732 4728 Glu148Lys
442 India 708 A 4732 4727
443 India 709 G 4732 4727
444 India 710 C 4732 4726
445 India 711 T 4732 4726
446 India 712 T 4732 4726
447 India 713 G 4732 4725
448 India 714 G C 4732 4726 Gly150Ala
449 India 715 C G 4732 4726 Gly150Gly
450 India 716 A G 4732 4724 Thr151Ala
451 India 717 C G 4732 4724 Thr151Ser
452 India 718 T 4730 4719
453 India 719 G 4730 4722
454 India 720 A T 4730 4722 Asp152Val
455 India 721 T C 4730 4724 Asp152Asp
456 India 722 C 4731 4726
457 India 723 C T 4731 4722 Pro153Leu
458 India 724 T 4731 4726
459 India 725 T 4731 4726
460 India 726 A 4730 4725
461 India 727 T 4727 4721
462 India 728 G 4727 4725
463 India 729 A 4726 4723
464 India 730 A 4725 4722
465 India 731 G 4725 4721
466 India 732 A 4724 4721
467 India 733 T 4724 4721
468 India 734 T 4724 4722
469 India 735 T 4724 4722
470 India 736 T 4724 4722
471 India 737 C 4724 4722
472 India 738 A 4723 4721
473 India 739 A 4723 4721
474 India 740 G 4723 4721
475 India 741 A 4723 4721
476 India 742 A G 4723 4719 Glu159Glu
477 India 743 A 4723 4721
478 India 744 A 4723 4721
479 India 745 C T 4723 4718 Asn160Asn
480 India 746 T 4726 4675
481 India 747 G 4726 4724
482 India 748 G T 4726 4722 Trp161Cys
483 India 749 A 4726 4723
484 India 750 A 4726 4724
485 India 751 C T 4726 4723 Asn162Asn
486 India 752 A 4726 4724
487 India 753 C 4726 4724
488 India 754 T 4726 4724
489 India 755 A 4726 4725
490 India 756 A 4726 4725
491 India 757 A 4726 4725
492 India 758 C 4726 4725
493 India 759 A 4726 4725
494 India 760 T C 4726 4724 His165His
495 India 761 A T,G 4726 4722 Ser166Cys-p.Ser166Gly
496 India 762 G 4726 4726
497 India 763 C 4726 4724
498 India 764 A 4726 4726
499 India 765 G T 4726 4724 Ser167Ile
500 India 766 T 4725 4725
501 India 767 G 4725 4725
502 India 768 G 4725 4725
503 India 769 T 4725 4725
504 India 770 G T 4725 4724 Val169Phe
505 India 771 T C 4725 4721 Val169Ala
506 India 772 T 4725 4725
507 India 773 A 4725 4725
508 India 774 C 4725 4723
509 India 775 C 4725 4725
510 India 776 C 4725 4725
511 India 777 G 4725 4725
512 India 778 T 4725 4725
513 India 779 G 4725 4724
514 India 780 A 4725 4725
515 India 781 A 4725 4725
516 India 782 C 4725 4725
517 India 783 T 4725 4725
518 India 784 C T 4725 4721 Leu173Leu
519 India 785 A 4725 4725
520 India 786 T 4725 4725
521 India 787 G 4725 4725
522 India 788 C 4725 4725
523 India 789 G 4725 4725
524 India 790 T 4725 4725
525 India 791 G 4725 4725
526 India 792 A 4725 4725
527 India 793 G 4725 4725
528 India 794 C 4725 4725
529 India 795 T 4725 4725
530 India 796 T C 4725 4724 Leu177Leu
531 India 797 A 4725 4725
532 India 798 A 4725 4725
533 India 799 C 4725 4725
534 India 800 G 4725 4725
535 India 801 G 4725 4723
536 India 802 A 4724 4724
537 India 803 G 4724 4723
538 India 804 G 4724 4724
539 India 805 G 4724 4724