National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   540                                        
?                                            
A   21 1                                 1    
C   3                                        
D   27                                        
E   54     2           1                      
F   15   1                                    
G   66           1                            
H   21                                        
I   9                                        
K   27                                        
L   63                   1                    
M   9                                        
N   18                                        
P   24                               1        
Q   21                           1            
R   30                             1          
S   30                                        
T   21               1                 1      
V   63                                   1    
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Hungary 266 A 277 277
1 Hungary 267 T 277 277
2 Hungary 268 G 277 277
3 Hungary 269 G 277 277
4 Hungary 270 A 277 277
5 Hungary 271 G 277 277
6 Hungary 272 A 277 277
7 Hungary 273 G 277 277
8 Hungary 274 C 277 277
9 Hungary 275 C 277 277
10 Hungary 276 T 277 277
11 Hungary 277 T 277 277
12 Hungary 278 G 277 277
13 Hungary 279 T 277 277
14 Hungary 280 C 277 277
15 Hungary 281 C 277 277
16 Hungary 282 C 277 277
17 Hungary 283 T 277 277
18 Hungary 284 G 277 277
19 Hungary 285 G 277 277
20 Hungary 286 T 277 277
21 Hungary 287 T 277 277
22 Hungary 288 T G 277 276 Phe8Cys
23 Hungary 289 C 277 277
24 Hungary 290 A 277 277
25 Hungary 291 A 277 277
26 Hungary 292 C 277 277
27 Hungary 293 G 277 277
28 Hungary 294 A 277 277
29 Hungary 295 G 277 277
30 Hungary 296 A 277 277
31 Hungary 297 A 277 277
32 Hungary 298 A 277 277
33 Hungary 299 A 277 277
34 Hungary 300 C T 277 276 Thr12Ile
35 Hungary 301 A 277 277
36 Hungary 302 C 277 277
37 Hungary 303 A 277 277
38 Hungary 304 C 277 277
39 Hungary 305 G 277 277
40 Hungary 306 T 277 277
41 Hungary 307 C 277 277
42 Hungary 308 C 277 277
43 Hungary 309 A 277 277
44 Hungary 310 A 277 277
45 Hungary 311 C 277 277
46 Hungary 312 T 277 277
47 Hungary 313 C T 277 268 Leu16Leu
48 Hungary 314 A 277 277
49 Hungary 315 G 277 277
50 Hungary 316 T 277 277
51 Hungary 317 T 277 277
52 Hungary 318 T 277 277
53 Hungary 319 G 277 277
54 Hungary 320 C 277 277
55 Hungary 321 C 277 277
56 Hungary 322 T 277 277
57 Hungary 323 G 277 277
58 Hungary 324 T 277 277
59 Hungary 325 T 277 277
60 Hungary 326 T 277 277
61 Hungary 327 T 277 277
62 Hungary 328 A 277 277
63 Hungary 329 C 277 277
64 Hungary 330 A 277 277
65 Hungary 331 G 277 277
66 Hungary 332 G 277 277
67 Hungary 333 T 277 277
68 Hungary 334 T 277 277
69 Hungary 335 C 277 277
70 Hungary 336 G 277 277
71 Hungary 337 C T 277 276 Arg24Arg
72 Hungary 338 G 277 277
73 Hungary 339 A 277 277
74 Hungary 340 C 277 277
75 Hungary 341 G 277 277
76 Hungary 342 T 277 277
77 Hungary 343 G 278 278
78 Hungary 344 C 278 278
79 Hungary 345 T 278 278
80 Hungary 346 C 278 278
81 Hungary 347 G 278 278
82 Hungary 348 T 278 278
83 Hungary 349 A 278 278
84 Hungary 350 C 278 278
85 Hungary 351 G 278 278
86 Hungary 352 T 278 278
87 Hungary 353 G 278 278
88 Hungary 354 G 278 278
89 Hungary 355 C 278 278
90 Hungary 356 T 278 278
91 Hungary 357 T 278 278
92 Hungary 358 T 278 278
93 Hungary 359 G 278 278
94 Hungary 360 G 278 278
95 Hungary 361 A 278 278
96 Hungary 362 G 278 278
97 Hungary 363 A 278 278
98 Hungary 364 C 278 278
99 Hungary 365 T 278 278
100 Hungary 366 C 278 278
101 Hungary 367 C 278 278
102 Hungary 368 G 278 278
103 Hungary 369 T 278 278
104 Hungary 370 G 278 278
105 Hungary 371 G 278 278
106 Hungary 372 A 278 278
107 Hungary 373 G 278 278
108 Hungary 374 G 278 278
109 Hungary 375 A 278 278
110 Hungary 376 G T 278 273 Glu37Asp
111 Hungary 377 G 278 278
112 Hungary 378 T 278 278
113 Hungary 379 C 278 278
114 Hungary 380 T 278 278
115 Hungary 381 T 278 278
116 Hungary 382 A 278 278
117 Hungary 383 T 278 278
118 Hungary 384 C 278 278
119 Hungary 385 A 278 278
120 Hungary 386 G 278 278
121 Hungary 387 A 278 278
122 Hungary 388 G T 278 277 Glu41Asp
123 Hungary 389 G 278 278
124 Hungary 390 C 278 278
125 Hungary 391 A 278 278
126 Hungary 392 C 278 278
127 Hungary 393 G 278 278
128 Hungary 394 T 278 278
129 Hungary 395 C 278 278
130 Hungary 396 A 278 278
131 Hungary 397 A 278 278
132 Hungary 398 C 278 278
133 Hungary 399 A 278 278
134 Hungary 400 T 278 278
135 Hungary 401 C 278 278
136 Hungary 402 T 278 278
137 Hungary 403 T 278 278
138 Hungary 404 A 278 278
139 Hungary 405 A 278 278
140 Hungary 406 A 278 278
141 Hungary 407 G 278 278
142 Hungary 408 A 278 278
143 Hungary 409 T 278 278
144 Hungary 410 G 278 278
145 Hungary 411 G 278 278
146 Hungary 412 C 278 278
147 Hungary 413 A 278 278
148 Hungary 414 C 278 278
149 Hungary 415 T 278 278
150 Hungary 416 T 278 278
151 Hungary 417 G 278 278
152 Hungary 418 T 278 278
153 Hungary 419 G 278 278
154 Hungary 420 G 278 278
155 Hungary 421 C 278 278
156 Hungary 422 T 278 278
157 Hungary 423 T 278 278
158 Hungary 424 A 278 278
159 Hungary 425 G 278 278
160 Hungary 426 T 278 278
161 Hungary 427 A 278 278
162 Hungary 428 G 278 278
163 Hungary 429 A 278 278
164 Hungary 430 A 278 278
165 Hungary 431 G 278 278
166 Hungary 432 T 278 278
167 Hungary 433 T 278 278
168 Hungary 434 G 278 278
169 Hungary 435 A 278 277
170 Hungary 436 A 278 278
171 Hungary 437 A 278 278
172 Hungary 438 A 278 278
173 Hungary 439 A 278 278
174 Hungary 440 G 278 278
175 Hungary 441 G 278 278
176 Hungary 442 C 278 278
177 Hungary 443 G 278 278
178 Hungary 444 T 278 278
179 Hungary 445 T 278 278
180 Hungary 446 T 278 278
181 Hungary 447 T 278 278
182 Hungary 448 G 278 278
183 Hungary 449 C T 278 271 Pro62Ser
184 Hungary 450 C 278 278
185 Hungary 451 T 278 278
186 Hungary 452 C 278 278
187 Hungary 453 A 278 278
188 Hungary 454 A 278 278
189 Hungary 455 C 278 278
190 Hungary 456 T 278 278
191 Hungary 457 T 278 278
192 Hungary 458 G 278 278
193 Hungary 459 A 278 278
194 Hungary 460 A 278 278
195 Hungary 461 C 278 278
196 Hungary 462 A 278 278
197 Hungary 463 G 278 278
198 Hungary 464 C 278 278
199 Hungary 465 C 278 278
200 Hungary 466 C 278 278
201 Hungary 467 T 278 278
202 Hungary 468 A 278 278
203 Hungary 469 T 278 278
204 Hungary 470 G 278 278
205 Hungary 471 T 278 278
206 Hungary 472 G 278 278
207 Hungary 473 T 278 278
208 Hungary 474 T 278 278
209 Hungary 475 C 278 278
210 Hungary 476 A 278 278
211 Hungary 477 T 278 278
212 Hungary 478 C 278 278
213 Hungary 479 A 278 278
214 Hungary 480 A 278 278
215 Hungary 481 A 278 278
216 Hungary 482 C 278 278
217 Hungary 483 G 278 278
218 Hungary 484 T 278 278
219 Hungary 485 T 278 278
220 Hungary 486 C 278 278
221 Hungary 487 G 278 278
222 Hungary 488 G 278 278
223 Hungary 489 A 278 278
224 Hungary 490 T 278 278
225 Hungary 491 G 278 278
226 Hungary 492 C 278 278
227 Hungary 493 T 278 278
228 Hungary 494 C 278 278
229 Hungary 495 G 278 278
230 Hungary 496 A 278 278
231 Hungary 497 A 278 278
232 Hungary 498 C 278 278
233 Hungary 499 T A 278 277 Thr78Thr
234 Hungary 500 G 278 278
235 Hungary 501 C 278 278
236 Hungary 502 A 278 278
237 Hungary 503 C 278 278
238 Hungary 504 C 278 278
239 Hungary 505 T 278 278
240 Hungary 506 C 278 278
241 Hungary 507 A 278 278
242 Hungary 508 T 278 278
243 Hungary 509 G 278 278
244 Hungary 510 G 278 278
245 Hungary 511 T 278 278
246 Hungary 512 C 278 278
247 Hungary 513 A 278 278
248 Hungary 514 T 278 278
249 Hungary 515 G 278 278
250 Hungary 516 T 278 278
251 Hungary 517 T 278 278
252 Hungary 518 A 278 278
253 Hungary 519 T 278 278
254 Hungary 520 G 278 278
255 Hungary 521 G 278 278
256 Hungary 522 T 278 278
257 Hungary 523 T 278 278
258 Hungary 524 G 278 278
259 Hungary 525 A 278 278
260 Hungary 526 G 278 278
261 Hungary 527 C 278 278
262 Hungary 528 T 278 278
263 Hungary 529 G 278 278
264 Hungary 530 G 278 278
265 Hungary 531 T 278 278
266 Hungary 532 A 278 278
267 Hungary 533 G 278 278
268 Hungary 534 C T 278 277 Ala90Val
269 Hungary 535 A 278 278
270 Hungary 536 G 278 278
271 Hungary 537 A 278 278
272 Hungary 538 A 278 278
273 Hungary 539 C 278 278
274 Hungary 540 T 278 278
275 Hungary 541 C 278 278
276 Hungary 542 G A 278 277 Glu93Lys
277 Hungary 543 A 278 278
278 Hungary 544 A 278 278
279 Hungary 545 G 278 278
280 Hungary 546 G 278 278
281 Hungary 547 C 278 278
282 Hungary 548 A 278 278
283 Hungary 549 T 278 278
284 Hungary 550 T 278 278
285 Hungary 551 C 278 278
286 Hungary 552 A 278 278
287 Hungary 553 G 278 278
288 Hungary 554 T 278 278
289 Hungary 555 A 278 278
290 Hungary 556 C 278 278
291 Hungary 557 G 278 278
292 Hungary 558 G 278 278
293 Hungary 559 T 278 278
294 Hungary 560 C 278 278
295 Hungary 561 G 278 278
296 Hungary 562 T 278 278
297 Hungary 563 A 278 278
298 Hungary 564 G 278 278
299 Hungary 565 T 278 278
300 Hungary 566 G 278 278
301 Hungary 567 G 278 278
302 Hungary 568 T 278 278
303 Hungary 569 G 278 278
304 Hungary 570 A 278 278
305 Hungary 571 G 278 278
306 Hungary 572 A 278 278
307 Hungary 573 C 278 278
308 Hungary 574 A 278 278
309 Hungary 575 C 278 278
310 Hungary 576 T 278 278
311 Hungary 577 T 278 278
312 Hungary 578 G 278 278
313 Hungary 579 G 278 278
314 Hungary 580 T 278 278
315 Hungary 581 G 278 278
316 Hungary 582 T 278 278
317 Hungary 583 C 278 278
318 Hungary 584 C 278 278
319 Hungary 585 T 278 278
320 Hungary 586 T 278 278
321 Hungary 587 G 278 278
322 Hungary 588 T 278 278
323 Hungary 589 C 278 278
324 Hungary 590 C 278 278
325 Hungary 591 C 278 278
326 Hungary 592 T 278 278
327 Hungary 593 C 278 278
328 Hungary 594 A 278 278
329 Hungary 595 T 278 278
330 Hungary 596 G 278 278
331 Hungary 597 T 278 278
332 Hungary 598 G 278 278
333 Hungary 599 G 278 278
334 Hungary 600 G 278 278
335 Hungary 601 C T 278 277 Gly112Gly
336 Hungary 602 G 278 278
337 Hungary 603 A 278 278
338 Hungary 604 A 278 278
339 Hungary 605 A 278 278
340 Hungary 606 T 278 278
341 Hungary 607 A 278 278
342 Hungary 608 C 278 278
343 Hungary 609 C 278 278
344 Hungary 610 A 278 278
345 Hungary 611 G 278 278
346 Hungary 612 T 278 278
347 Hungary 613 G 278 278
348 Hungary 614 G 278 278
349 Hungary 615 C 278 278
350 Hungary 616 T 278 278
351 Hungary 617 T 278 278
352 Hungary 618 A 278 278
353 Hungary 619 C 278 278
354 Hungary 620 C 278 278
355 Hungary 621 G 278 278
356 Hungary 622 C 278 278
357 Hungary 623 A 278 278
358 Hungary 624 A 278 278
359 Hungary 625 G 278 278
360 Hungary 626 G 278 278
361 Hungary 627 T 278 278
362 Hungary 628 T 278 278
363 Hungary 629 C 278 278
364 Hungary 630 T 278 278
365 Hungary 631 T 278 278
366 Hungary 632 C 278 278
367 Hungary 633 T 278 278
368 Hungary 634 T 278 278
369 Hungary 635 C 278 278
370 Hungary 636 G 278 278
371 Hungary 637 T 278 278
372 Hungary 638 A 278 278
373 Hungary 639 A 278 278
374 Hungary 640 G 278 278
375 Hungary 641 A 278 278
376 Hungary 642 A 278 278
377 Hungary 643 C 278 278
378 Hungary 644 G 278 278
379 Hungary 645 G 278 278
380 Hungary 646 T 278 278
381 Hungary 647 A 278 278
382 Hungary 648 A 278 278
383 Hungary 649 T 278 278
384 Hungary 650 A 278 278
385 Hungary 651 A 278 278
386 Hungary 652 A 278 278
387 Hungary 653 G 278 278
388 Hungary 654 G 278 278
389 Hungary 655 A 278 278
390 Hungary 656 G 278 278
391 Hungary 657 C 278 278
392 Hungary 658 T C 278 277 Ala131Ala
393 Hungary 659 G 278 278
394 Hungary 660 G 278 278
395 Hungary 661 T 278 278
396 Hungary 662 G 278 278
397 Hungary 663 G 278 278
398 Hungary 664 C 278 278
399 Hungary 665 C 278 278
400 Hungary 666 A 278 278
401 Hungary 667 T 278 278
402 Hungary 668 A 278 278
403 Hungary 669 G 278 278
404 Hungary 670 T 278 278
405 Hungary 671 T 278 278
406 Hungary 672 A 278 278
407 Hungary 673 C 278 278
408 Hungary 674 G 278 278
409 Hungary 675 G 278 278
410 Hungary 676 C 278 278
411 Hungary 677 G 278 278
412 Hungary 678 C 278 278
413 Hungary 679 C 278 278
414 Hungary 680 G 278 278
415 Hungary 681 A 278 278
416 Hungary 682 T 278 278
417 Hungary 683 C 278 277
418 Hungary 684 T 278 278
419 Hungary 685 A 278 278
420 Hungary 686 A 278 278
421 Hungary 687 A 278 278
422 Hungary 688 G 278 278
423 Hungary 689 T 278 278
424 Hungary 690 C 278 278
425 Hungary 691 A 278 278
426 Hungary 692 T 278 278
427 Hungary 693 T 278 278
428 Hungary 694 T 278 278
429 Hungary 695 G 278 278
430 Hungary 696 A 278 278
431 Hungary 697 C 278 278
432 Hungary 698 T 278 278
433 Hungary 699 T 278 278
434 Hungary 700 A 278 278
435 Hungary 701 G 278 278
436 Hungary 702 G 278 278
437 Hungary 703 C 278 278
438 Hungary 704 G 278 278
439 Hungary 705 A 278 278
440 Hungary 706 C 278 278
441 Hungary 707 G 278 278
442 Hungary 708 A 278 278
443 Hungary 709 G 278 278
444 Hungary 710 C 278 278
445 Hungary 711 T 278 278
446 Hungary 712 T 278 278
447 Hungary 713 G 278 278
448 Hungary 714 G 278 278
449 Hungary 715 C 278 278
450 Hungary 716 A 278 278
451 Hungary 717 C 278 278
452 Hungary 718 T 278 278
453 Hungary 719 G 278 278
454 Hungary 720 A 278 278
455 Hungary 721 T 278 278
456 Hungary 722 C 278 278
457 Hungary 723 C 278 278
458 Hungary 724 T 278 278
459 Hungary 725 T 278 278
460 Hungary 726 A 278 278
461 Hungary 727 T 278 278
462 Hungary 728 G 278 278
463 Hungary 729 A 278 278
464 Hungary 730 A 278 278
465 Hungary 731 G 278 278
466 Hungary 732 A 278 278
467 Hungary 733 T 278 278
468 Hungary 734 T 278 278
469 Hungary 735 T 278 278
470 Hungary 736 T 278 278
471 Hungary 737 C 278 278
472 Hungary 738 A 278 278
473 Hungary 739 A G 278 277 Gln158Gln
474 Hungary 740 G 278 278
475 Hungary 741 A 278 278
476 Hungary 742 A 278 278
477 Hungary 743 A 278 278
478 Hungary 744 A 278 278
479 Hungary 745 C 278 278
480 Hungary 746 T 278 278
481 Hungary 747 G 278 278
482 Hungary 748 G 278 278
483 Hungary 749 A 278 278
484 Hungary 750 A 278 278
485 Hungary 751 C 278 278
486 Hungary 752 A 278 278
487 Hungary 753 C 278 278
488 Hungary 754 T 278 278
489 Hungary 755 A 278 278
490 Hungary 756 A 278 278
491 Hungary 757 A 278 278
492 Hungary 758 C 278 278
493 Hungary 759 A 278 278
494 Hungary 760 T 278 278
495 Hungary 761 A 278 278
496 Hungary 762 G 278 278
497 Hungary 763 C 278 278
498 Hungary 764 A 278 278
499 Hungary 765 G 278 278
500 Hungary 766 T 278 278
501 Hungary 767 G 278 278
502 Hungary 768 G 278 278
503 Hungary 769 T 278 278
504 Hungary 770 G 278 278
505 Hungary 771 T 278 278
506 Hungary 772 T C 278 264 Val169Val
507 Hungary 773 A 278 278
508 Hungary 774 C 278 278
509 Hungary 775 C 278 278
510 Hungary 776 C 278 278
511 Hungary 777 G 278 278
512 Hungary 778 T 278 278
513 Hungary 779 G 278 278
514 Hungary 780 A 278 278
515 Hungary 781 A 278 278
516 Hungary 782 C 278 278
517 Hungary 783 T 278 278
518 Hungary 784 C 278 278
519 Hungary 785 A 278 278
520 Hungary 786 T 278 278
521 Hungary 787 G 278 278
522 Hungary 788 C 278 278
523 Hungary 789 G 278 278
524 Hungary 790 T 278 278
525 Hungary 791 G 278 278
526 Hungary 792 A 278 278
527 Hungary 793 G 278 278
528 Hungary 794 C 278 278
529 Hungary 795 T 278 278
530 Hungary 796 T 278 278
531 Hungary 797 A 278 278
532 Hungary 798 A 278 278
533 Hungary 799 C 278 278
534 Hungary 800 G 278 278
535 Hungary 801 G 278 278
536 Hungary 802 A 278 278
537 Hungary 803 G 278 278
538 Hungary 804 G 278 278
539 Hungary 805 G 278 278