National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   540                                        
?                                            
A   21                                   1    
C   3                                        
D   27       1                                
E   54                                        
F   15                                        
G   66                                        
H   21                                        
I   9                                        
K   27                                        
L   63                                        
M   9                                        
N   18                                        
P   24                   1                    
Q   21                                        
R   30                                        
S   30                                        
T   21                                        
V   63                                        
W   3                                        
Y   15             1                          

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Guatemala 266 A 32 32
1 Guatemala 267 T 32 32
2 Guatemala 268 G 32 32
3 Guatemala 269 G 32 32
4 Guatemala 270 A 32 32
5 Guatemala 271 G 32 32
6 Guatemala 272 A 32 32
7 Guatemala 273 G 32 32
8 Guatemala 274 C 32 32
9 Guatemala 275 C 32 32
10 Guatemala 276 T 32 32
11 Guatemala 277 T 32 32
12 Guatemala 278 G 32 32
13 Guatemala 279 T 32 32
14 Guatemala 280 C 32 32
15 Guatemala 281 C 32 32
16 Guatemala 282 C 32 32
17 Guatemala 283 T 32 32
18 Guatemala 284 G 32 32
19 Guatemala 285 G 32 32
20 Guatemala 286 T 32 32
21 Guatemala 287 T 32 32
22 Guatemala 288 T 32 32
23 Guatemala 289 C 32 32
24 Guatemala 290 A 32 32
25 Guatemala 291 A 32 32
26 Guatemala 292 C 32 32
27 Guatemala 293 G 32 32
28 Guatemala 294 A 32 32
29 Guatemala 295 G 32 32
30 Guatemala 296 A 32 32
31 Guatemala 297 A 32 32
32 Guatemala 298 A 32 32
33 Guatemala 299 A 32 32
34 Guatemala 300 C 32 32
35 Guatemala 301 A 32 32
36 Guatemala 302 C 32 32
37 Guatemala 303 A 32 32
38 Guatemala 304 C 32 32
39 Guatemala 305 G 32 32
40 Guatemala 306 T 32 32
41 Guatemala 307 C 32 32
42 Guatemala 308 C 32 32
43 Guatemala 309 A 32 32
44 Guatemala 310 A 32 32
45 Guatemala 311 C 32 32
46 Guatemala 312 T 32 32
47 Guatemala 313 C 32 32
48 Guatemala 314 A 32 32
49 Guatemala 315 G 32 32
50 Guatemala 316 T 32 32
51 Guatemala 317 T 32 32
52 Guatemala 318 T 32 32
53 Guatemala 319 G 32 32
54 Guatemala 320 C 32 32
55 Guatemala 321 C 32 32
56 Guatemala 322 T 32 32
57 Guatemala 323 G 32 32
58 Guatemala 324 T 32 32
59 Guatemala 325 T 32 32
60 Guatemala 326 T 32 32
61 Guatemala 327 T 32 32
62 Guatemala 328 A 32 32
63 Guatemala 329 C 32 32
64 Guatemala 330 A 32 32
65 Guatemala 331 G 32 32
66 Guatemala 332 G 32 32
67 Guatemala 333 T 32 32
68 Guatemala 334 T 32 32
69 Guatemala 335 C 32 32
70 Guatemala 336 G 32 32
71 Guatemala 337 C 32 32
72 Guatemala 338 G 32 32
73 Guatemala 339 A 32 32
74 Guatemala 340 C 32 32
75 Guatemala 341 G 32 32
76 Guatemala 342 T 32 32
77 Guatemala 343 G 32 32
78 Guatemala 344 C 32 32
79 Guatemala 345 T 32 32
80 Guatemala 346 C 32 32
81 Guatemala 347 G 32 32
82 Guatemala 348 T 32 32
83 Guatemala 349 A 32 32
84 Guatemala 350 C 32 32
85 Guatemala 351 G 32 32
86 Guatemala 352 T 32 32
87 Guatemala 353 G 32 32
88 Guatemala 354 G 32 32
89 Guatemala 355 C 32 32
90 Guatemala 356 T 32 32
91 Guatemala 357 T 32 32
92 Guatemala 358 T 32 32
93 Guatemala 359 G 32 32
94 Guatemala 360 G 32 32
95 Guatemala 361 A 32 32
96 Guatemala 362 G 32 32
97 Guatemala 363 A 32 32
98 Guatemala 364 C 32 32
99 Guatemala 365 T 32 32
100 Guatemala 366 C 32 32
101 Guatemala 367 C 32 32
102 Guatemala 368 G 32 32
103 Guatemala 369 T 32 32
104 Guatemala 370 G 32 32
105 Guatemala 371 G 32 32
106 Guatemala 372 A 32 32
107 Guatemala 373 G 32 32
108 Guatemala 374 G 32 32
109 Guatemala 375 A 32 32
110 Guatemala 376 G 32 32
111 Guatemala 377 G 32 32
112 Guatemala 378 T 32 32
113 Guatemala 379 C 32 32
114 Guatemala 380 T 32 32
115 Guatemala 381 T 32 32
116 Guatemala 382 A 32 32
117 Guatemala 383 T 32 32
118 Guatemala 384 C 32 32
119 Guatemala 385 A 32 32
120 Guatemala 386 G 32 32
121 Guatemala 387 A 32 32
122 Guatemala 388 G 32 32
123 Guatemala 389 G 32 32
124 Guatemala 390 C 32 32
125 Guatemala 391 A 32 32
126 Guatemala 392 C 32 32
127 Guatemala 393 G 32 32
128 Guatemala 394 T 32 32
129 Guatemala 395 C 32 32
130 Guatemala 396 A 32 32
131 Guatemala 397 A 32 32
132 Guatemala 398 C 32 32
133 Guatemala 399 A 32 32
134 Guatemala 400 T 32 32
135 Guatemala 401 C 32 32
136 Guatemala 402 T 32 32
137 Guatemala 403 T 32 32
138 Guatemala 404 A 32 32
139 Guatemala 405 A 32 32
140 Guatemala 406 A 32 32
141 Guatemala 407 G 32 32
142 Guatemala 408 A 32 32
143 Guatemala 409 T 32 32
144 Guatemala 410 G 32 32
145 Guatemala 411 G 32 32
146 Guatemala 412 C 32 32
147 Guatemala 413 A 32 32
148 Guatemala 414 C 32 32
149 Guatemala 415 T 32 32
150 Guatemala 416 T 32 32
151 Guatemala 417 G 32 32
152 Guatemala 418 T 32 32
153 Guatemala 419 G 32 32
154 Guatemala 420 G 32 32
155 Guatemala 421 C 32 32
156 Guatemala 422 T 32 32
157 Guatemala 423 T 32 32
158 Guatemala 424 A 32 32
159 Guatemala 425 G 32 32
160 Guatemala 426 T 32 32
161 Guatemala 427 A 32 32
162 Guatemala 428 G 32 32
163 Guatemala 429 A 32 32
164 Guatemala 430 A 32 32
165 Guatemala 431 G 32 32
166 Guatemala 432 T 32 32
167 Guatemala 433 T 32 32
168 Guatemala 434 G 32 32
169 Guatemala 435 A 32 32
170 Guatemala 436 A 32 32
171 Guatemala 437 A 32 32
172 Guatemala 438 A 32 32
173 Guatemala 439 A 32 32
174 Guatemala 440 G 32 32
175 Guatemala 441 G 32 32
176 Guatemala 442 C 32 32
177 Guatemala 443 G 32 32
178 Guatemala 444 T 32 32
179 Guatemala 445 T 32 32
180 Guatemala 446 T 32 32
181 Guatemala 447 T 32 32
182 Guatemala 448 G 32 32
183 Guatemala 449 C 32 32
184 Guatemala 450 C 32 32
185 Guatemala 451 T 32 32
186 Guatemala 452 C 32 32
187 Guatemala 453 A 32 32
188 Guatemala 454 A 32 32
189 Guatemala 455 C 32 32
190 Guatemala 456 T 32 32
191 Guatemala 457 T 32 32
192 Guatemala 458 G 32 32
193 Guatemala 459 A 32 32
194 Guatemala 460 A 32 32
195 Guatemala 461 C 32 32
196 Guatemala 462 A 32 32
197 Guatemala 463 G 32 32
198 Guatemala 464 C 32 32
199 Guatemala 465 C 32 32
200 Guatemala 466 C 32 32
201 Guatemala 467 T 32 32
202 Guatemala 468 A 32 32
203 Guatemala 469 T 32 32
204 Guatemala 470 G 32 32
205 Guatemala 471 T 32 32
206 Guatemala 472 G 32 32
207 Guatemala 473 T 32 32
208 Guatemala 474 T 32 32
209 Guatemala 475 C 32 32
210 Guatemala 476 A 32 32
211 Guatemala 477 T 32 32
212 Guatemala 478 C 32 32
213 Guatemala 479 A 32 32
214 Guatemala 480 A 32 32
215 Guatemala 481 A 32 32
216 Guatemala 482 C 32 32
217 Guatemala 483 G 32 32
218 Guatemala 484 T 32 32
219 Guatemala 485 T 32 32
220 Guatemala 486 C 32 32
221 Guatemala 487 G 32 32
222 Guatemala 488 G 32 32
223 Guatemala 489 A 32 32
224 Guatemala 490 T A 32 31 Asp75Glu
225 Guatemala 491 G 32 32
226 Guatemala 492 C 32 32
227 Guatemala 493 T 32 32
228 Guatemala 494 C 32 32
229 Guatemala 495 G 32 32
230 Guatemala 496 A 32 32
231 Guatemala 497 A 32 32
232 Guatemala 498 C 32 32
233 Guatemala 499 T 32 32
234 Guatemala 500 G 32 32
235 Guatemala 501 C 32 32
236 Guatemala 502 A 32 32
237 Guatemala 503 C 32 32
238 Guatemala 504 C T 32 31 Pro80Leu
239 Guatemala 505 T 32 32
240 Guatemala 506 C 32 32
241 Guatemala 507 A 32 32
242 Guatemala 508 T 32 32
243 Guatemala 509 G 32 32
244 Guatemala 510 G 32 32
245 Guatemala 511 T 32 32
246 Guatemala 512 C 32 32
247 Guatemala 513 A 32 32
248 Guatemala 514 T 32 32
249 Guatemala 515 G 32 32
250 Guatemala 516 T 32 32
251 Guatemala 517 T 32 32
252 Guatemala 518 A 32 32
253 Guatemala 519 T 32 32
254 Guatemala 520 G 32 32
255 Guatemala 521 G 32 32
256 Guatemala 522 T 32 32
257 Guatemala 523 T 32 32
258 Guatemala 524 G 32 32
259 Guatemala 525 A 32 32
260 Guatemala 526 G 32 32
261 Guatemala 527 C 32 32
262 Guatemala 528 T 32 32
263 Guatemala 529 G 32 32
264 Guatemala 530 G 32 32
265 Guatemala 531 T 32 32
266 Guatemala 532 A 32 32
267 Guatemala 533 G 32 32
268 Guatemala 534 C T 32 31 Ala90Val
269 Guatemala 535 A 32 32
270 Guatemala 536 G 32 32
271 Guatemala 537 A 32 32
272 Guatemala 538 A 32 32
273 Guatemala 539 C 32 32
274 Guatemala 540 T 32 32
275 Guatemala 541 C 32 32
276 Guatemala 542 G 32 32
277 Guatemala 543 A 32 32
278 Guatemala 544 A 32 32
279 Guatemala 545 G 32 32
280 Guatemala 546 G 32 32
281 Guatemala 547 C 32 32
282 Guatemala 548 A 32 32
283 Guatemala 549 T 32 32
284 Guatemala 550 T 32 32
285 Guatemala 551 C 32 32
286 Guatemala 552 A 32 32
287 Guatemala 553 G 32 32
288 Guatemala 554 T 32 32
289 Guatemala 555 A 32 32
290 Guatemala 556 C 32 32
291 Guatemala 557 G 32 32
292 Guatemala 558 G 32 32
293 Guatemala 559 T 32 32
294 Guatemala 560 C 32 32
295 Guatemala 561 G 32 32
296 Guatemala 562 T 32 32
297 Guatemala 563 A 32 32
298 Guatemala 564 G 32 32
299 Guatemala 565 T 32 32
300 Guatemala 566 G 32 32
301 Guatemala 567 G 32 32
302 Guatemala 568 T 32 32
303 Guatemala 569 G 32 32
304 Guatemala 570 A 32 32
305 Guatemala 571 G 32 32
306 Guatemala 572 A 32 32
307 Guatemala 573 C 32 32
308 Guatemala 574 A 32 32
309 Guatemala 575 C 32 32
310 Guatemala 576 T 32 32
311 Guatemala 577 T 32 32
312 Guatemala 578 G 32 32
313 Guatemala 579 G 32 32
314 Guatemala 580 T 32 32
315 Guatemala 581 G 32 32
316 Guatemala 582 T 32 32
317 Guatemala 583 C 32 32
318 Guatemala 584 C 32 32
319 Guatemala 585 T 32 32
320 Guatemala 586 T 32 32
321 Guatemala 587 G 32 32
322 Guatemala 588 T 32 32
323 Guatemala 589 C 32 32
324 Guatemala 590 C 32 32
325 Guatemala 591 C 32 32
326 Guatemala 592 T 32 32
327 Guatemala 593 C 32 32
328 Guatemala 594 A 32 32
329 Guatemala 595 T 32 32
330 Guatemala 596 G 32 32
331 Guatemala 597 T 32 32
332 Guatemala 598 G 32 32
333 Guatemala 599 G 32 32
334 Guatemala 600 G 32 32
335 Guatemala 601 C 32 32
336 Guatemala 602 G 32 32
337 Guatemala 603 A 32 32
338 Guatemala 604 A 32 32
339 Guatemala 605 A 32 32
340 Guatemala 606 T 32 32
341 Guatemala 607 A 32 32
342 Guatemala 608 C 32 32
343 Guatemala 609 C 32 32
344 Guatemala 610 A 32 32
345 Guatemala 611 G 32 32
346 Guatemala 612 T 32 32
347 Guatemala 613 G 32 32
348 Guatemala 614 G 32 32
349 Guatemala 615 C 32 32
350 Guatemala 616 T 32 32
351 Guatemala 617 T C 32 31 Tyr118His
352 Guatemala 618 A 32 32
353 Guatemala 619 C 32 32
354 Guatemala 620 C 32 32
355 Guatemala 621 G 32 32
356 Guatemala 622 C 32 32
357 Guatemala 623 A 32 32
358 Guatemala 624 A 32 32
359 Guatemala 625 G 32 32
360 Guatemala 626 G 32 32
361 Guatemala 627 T 32 32
362 Guatemala 628 T 32 32
363 Guatemala 629 C 32 32
364 Guatemala 630 T 32 32
365 Guatemala 631 T 32 32
366 Guatemala 632 C 32 32
367 Guatemala 633 T 32 32
368 Guatemala 634 T 32 32
369 Guatemala 635 C 32 32
370 Guatemala 636 G 32 32
371 Guatemala 637 T 32 32
372 Guatemala 638 A 32 32
373 Guatemala 639 A 32 32
374 Guatemala 640 G 32 32
375 Guatemala 641 A 32 32
376 Guatemala 642 A 32 32
377 Guatemala 643 C 32 32
378 Guatemala 644 G 32 32
379 Guatemala 645 G 32 32
380 Guatemala 646 T 32 32
381 Guatemala 647 A 32 32
382 Guatemala 648 A 32 32
383 Guatemala 649 T 32 32
384 Guatemala 650 A 32 32
385 Guatemala 651 A 32 32
386 Guatemala 652 A 32 32
387 Guatemala 653 G 32 32
388 Guatemala 654 G 32 32
389 Guatemala 655 A 32 32
390 Guatemala 656 G 32 32
391 Guatemala 657 C 32 32
392 Guatemala 658 T 32 32
393 Guatemala 659 G 32 32
394 Guatemala 660 G 32 32
395 Guatemala 661 T 32 32
396 Guatemala 662 G 32 32
397 Guatemala 663 G 32 32
398 Guatemala 664 C 32 32
399 Guatemala 665 C 32 32
400 Guatemala 666 A 32 32
401 Guatemala 667 T 32 32
402 Guatemala 668 A 32 32
403 Guatemala 669 G 32 32
404 Guatemala 670 T 32 32
405 Guatemala 671 T 32 32
406 Guatemala 672 A 32 32
407 Guatemala 673 C 32 32
408 Guatemala 674 G 32 32
409 Guatemala 675 G 32 32
410 Guatemala 676 C 32 32
411 Guatemala 677 G 32 32
412 Guatemala 678 C 32 32
413 Guatemala 679 C 32 32
414 Guatemala 680 G 32 32
415 Guatemala 681 A 32 32
416 Guatemala 682 T 32 32
417 Guatemala 683 C 32 32
418 Guatemala 684 T 32 32
419 Guatemala 685 A 32 32
420 Guatemala 686 A 32 32
421 Guatemala 687 A 32 32
422 Guatemala 688 G 32 32
423 Guatemala 689 T 32 32
424 Guatemala 690 C 32 32
425 Guatemala 691 A 32 32
426 Guatemala 692 T 32 32
427 Guatemala 693 T 32 32
428 Guatemala 694 T 32 32
429 Guatemala 695 G 32 32
430 Guatemala 696 A 32 32
431 Guatemala 697 C 32 32
432 Guatemala 698 T 32 32
433 Guatemala 699 T 32 32
434 Guatemala 700 A 32 32
435 Guatemala 701 G 32 32
436 Guatemala 702 G 32 32
437 Guatemala 703 C 32 32
438 Guatemala 704 G 32 32
439 Guatemala 705 A 32 32
440 Guatemala 706 C 32 32
441 Guatemala 707 G 32 32
442 Guatemala 708 A 32 32
443 Guatemala 709 G 32 32
444 Guatemala 710 C 32 32
445 Guatemala 711 T 32 32
446 Guatemala 712 T 32 32
447 Guatemala 713 G 32 32
448 Guatemala 714 G 32 32
449 Guatemala 715 C 32 32
450 Guatemala 716 A 32 32
451 Guatemala 717 C 32 32
452 Guatemala 718 T 32 32
453 Guatemala 719 G 32 32
454 Guatemala 720 A 32 32
455 Guatemala 721 T 32 32
456 Guatemala 722 C 32 32
457 Guatemala 723 C 32 32
458 Guatemala 724 T 32 32
459 Guatemala 725 T 32 32
460 Guatemala 726 A 32 32
461 Guatemala 727 T 32 32
462 Guatemala 728 G 32 32
463 Guatemala 729 A 32 32
464 Guatemala 730 A 32 32
465 Guatemala 731 G 32 32
466 Guatemala 732 A 32 32
467 Guatemala 733 T 32 32
468 Guatemala 734 T 32 32
469 Guatemala 735 T 32 32
470 Guatemala 736 T 32 32
471 Guatemala 737 C 32 32
472 Guatemala 738 A 32 32
473 Guatemala 739 A 32 32
474 Guatemala 740 G 32 32
475 Guatemala 741 A 32 32
476 Guatemala 742 A 32 32
477 Guatemala 743 A 32 32
478 Guatemala 744 A 32 32
479 Guatemala 745 C 32 32
480 Guatemala 746 T 32 32
481 Guatemala 747 G 32 32
482 Guatemala 748 G 32 32
483 Guatemala 749 A 32 32
484 Guatemala 750 A 32 32
485 Guatemala 751 C 32 32
486 Guatemala 752 A 32 32
487 Guatemala 753 C 32 32
488 Guatemala 754 T 32 32
489 Guatemala 755 A 32 32
490 Guatemala 756 A 32 32
491 Guatemala 757 A 32 32
492 Guatemala 758 C 32 32
493 Guatemala 759 A 32 32
494 Guatemala 760 T 32 32
495 Guatemala 761 A 32 32
496 Guatemala 762 G 32 32
497 Guatemala 763 C 32 32
498 Guatemala 764 A 32 32
499 Guatemala 765 G 32 32
500 Guatemala 766 T 32 32
501 Guatemala 767 G 32 32
502 Guatemala 768 G 32 32
503 Guatemala 769 T 32 32
504 Guatemala 770 G 32 32
505 Guatemala 771 T 32 32
506 Guatemala 772 T 32 32
507 Guatemala 773 A 32 32
508 Guatemala 774 C 32 32
509 Guatemala 775 C 32 32
510 Guatemala 776 C 32 32
511 Guatemala 777 G 32 32
512 Guatemala 778 T 32 32
513 Guatemala 779 G 32 32
514 Guatemala 780 A 32 32
515 Guatemala 781 A 32 32
516 Guatemala 782 C 32 32
517 Guatemala 783 T 32 32
518 Guatemala 784 C 32 32
519 Guatemala 785 A 32 32
520 Guatemala 786 T 32 32
521 Guatemala 787 G 32 32
522 Guatemala 788 C 32 32
523 Guatemala 789 G 32 32
524 Guatemala 790 T 32 32
525 Guatemala 791 G 32 32
526 Guatemala 792 A 32 32
527 Guatemala 793 G 32 32
528 Guatemala 794 C 32 32
529 Guatemala 795 T 32 32
530 Guatemala 796 T 32 32
531 Guatemala 797 A 32 32
532 Guatemala 798 A 32 32
533 Guatemala 799 C 32 32
534 Guatemala 800 G 32 32
535 Guatemala 801 G 32 32
536 Guatemala 802 A 32 32
537 Guatemala 803 G 32 32
538 Guatemala 804 G 32 32
539 Guatemala 805 G 32 32