National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   540                                        
?                                            
A   21                                        
C   3                                        
D   27                                        
E   54                                        
F   15                                        
G   66                                        
H   21             1                          
I   9                                        
K   27                                        
L   63                   1                    
M   9                                        
N   18                                        
P   24                                        
Q   21                                        
R   30                                        
S   30                                        
T   21                                        
V   63                                   1    
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Greece 266 A 140 140
1 Greece 267 T 140 140
2 Greece 268 G 140 140
3 Greece 269 G 140 140
4 Greece 270 A 140 140
5 Greece 271 G 140 140
6 Greece 272 A 140 140
7 Greece 273 G 140 140
8 Greece 274 C 140 140
9 Greece 275 C 140 140
10 Greece 276 T 140 140
11 Greece 277 T 140 140
12 Greece 278 G 140 140
13 Greece 279 T 140 140
14 Greece 280 C 140 140
15 Greece 281 C 140 140
16 Greece 282 C 140 140
17 Greece 283 T 140 140
18 Greece 284 G 140 140
19 Greece 285 G 140 140
20 Greece 286 T 140 140
21 Greece 287 T 140 140
22 Greece 288 T 140 140
23 Greece 289 C 140 140
24 Greece 290 A 140 140
25 Greece 291 A 140 140
26 Greece 292 C 140 140
27 Greece 293 G 140 140
28 Greece 294 A 140 140
29 Greece 295 G 140 140
30 Greece 296 A 140 140
31 Greece 297 A 140 140
32 Greece 298 A 140 140
33 Greece 299 A 140 140
34 Greece 300 C 140 140
35 Greece 301 A 140 140
36 Greece 302 C 140 140
37 Greece 303 A 140 140
38 Greece 304 C 140 140
39 Greece 305 G 140 140
40 Greece 306 T 140 140
41 Greece 307 C 140 140
42 Greece 308 C 140 140
43 Greece 309 A 140 140
44 Greece 310 A 140 140
45 Greece 311 C 140 140
46 Greece 312 T 140 140
47 Greece 313 C T 140 128 Leu16Leu
48 Greece 314 A 140 140
49 Greece 315 G 140 140
50 Greece 316 T 140 140
51 Greece 317 T 140 140
52 Greece 318 T 140 140
53 Greece 319 G 140 140
54 Greece 320 C 140 140
55 Greece 321 C 140 140
56 Greece 322 T 140 140
57 Greece 323 G 140 140
58 Greece 324 T 140 140
59 Greece 325 T 140 140
60 Greece 326 T 140 140
61 Greece 327 T 140 140
62 Greece 328 A 140 140
63 Greece 329 C 140 140
64 Greece 330 A 140 140
65 Greece 331 G 140 140
66 Greece 332 G 140 140
67 Greece 333 T 140 140
68 Greece 334 T 140 140
69 Greece 335 C 140 140
70 Greece 336 G 140 140
71 Greece 337 C 140 140
72 Greece 338 G 140 140
73 Greece 339 A 140 140
74 Greece 340 C 140 140
75 Greece 341 G 140 140
76 Greece 342 T 140 140
77 Greece 343 G 140 140
78 Greece 344 C 140 140
79 Greece 345 T 140 140
80 Greece 346 C 140 140
81 Greece 347 G 140 140
82 Greece 348 T 140 140
83 Greece 349 A 140 140
84 Greece 350 C 140 140
85 Greece 351 G 140 140
86 Greece 352 T 140 140
87 Greece 353 G 140 140
88 Greece 354 G 140 140
89 Greece 355 C 140 140
90 Greece 356 T 140 140
91 Greece 357 T 140 140
92 Greece 358 T 140 140
93 Greece 359 G 140 140
94 Greece 360 G 140 140
95 Greece 361 A 140 140
96 Greece 362 G 140 140
97 Greece 363 A 140 140
98 Greece 364 C 140 140
99 Greece 365 T 140 140
100 Greece 366 C 140 140
101 Greece 367 C 140 140
102 Greece 368 G 140 140
103 Greece 369 T 140 140
104 Greece 370 G 140 140
105 Greece 371 G 140 140
106 Greece 372 A 140 140
107 Greece 373 G 140 140
108 Greece 374 G 140 140
109 Greece 375 A 140 140
110 Greece 376 G 140 140
111 Greece 377 G 140 140
112 Greece 378 T 140 140
113 Greece 379 C 140 140
114 Greece 380 T 140 140
115 Greece 381 T 140 140
116 Greece 382 A 140 140
117 Greece 383 T 140 140
118 Greece 384 C 140 140
119 Greece 385 A 140 140
120 Greece 386 G 140 140
121 Greece 387 A 140 140
122 Greece 388 G 140 140
123 Greece 389 G 140 140
124 Greece 390 C 140 140
125 Greece 391 A 140 140
126 Greece 392 C 140 140
127 Greece 393 G 140 140
128 Greece 394 T 140 140
129 Greece 395 C 140 140
130 Greece 396 A 140 140
131 Greece 397 A 140 140
132 Greece 398 C 140 140
133 Greece 399 A 140 140
134 Greece 400 T 140 140
135 Greece 401 C 140 140
136 Greece 402 T 140 140
137 Greece 403 T 140 140
138 Greece 404 A 140 140
139 Greece 405 A 140 140
140 Greece 406 A 140 140
141 Greece 407 G 140 140
142 Greece 408 A 140 140
143 Greece 409 T 140 140
144 Greece 410 G 140 140
145 Greece 411 G 140 140
146 Greece 412 C 140 140
147 Greece 413 A 140 140
148 Greece 414 C 140 140
149 Greece 415 T 140 140
150 Greece 416 T 140 140
151 Greece 417 G 140 140
152 Greece 418 T 140 140
153 Greece 419 G 140 140
154 Greece 420 G 140 140
155 Greece 421 C 140 140
156 Greece 422 T 140 140
157 Greece 423 T 140 140
158 Greece 424 A 140 140
159 Greece 425 G 140 140
160 Greece 426 T 140 140
161 Greece 427 A 140 140
162 Greece 428 G 140 140
163 Greece 429 A 140 140
164 Greece 430 A 140 140
165 Greece 431 G 140 140
166 Greece 432 T 140 140
167 Greece 433 T 140 140
168 Greece 434 G 140 140
169 Greece 435 A 140 140
170 Greece 436 A 140 140
171 Greece 437 A 140 140
172 Greece 438 A 140 140
173 Greece 439 A 140 140
174 Greece 440 G 140 140
175 Greece 441 G 140 140
176 Greece 442 C 140 140
177 Greece 443 G 140 140
178 Greece 444 T 140 140
179 Greece 445 T C 140 138 Val60Val
180 Greece 446 T 140 140
181 Greece 447 T 140 140
182 Greece 448 G 140 140
183 Greece 449 C 140 140
184 Greece 450 C 140 140
185 Greece 451 T 140 140
186 Greece 452 C 140 140
187 Greece 453 A 140 140
188 Greece 454 A 140 140
189 Greece 455 C 140 140
190 Greece 456 T 140 140
191 Greece 457 T 140 140
192 Greece 458 G 140 140
193 Greece 459 A 140 140
194 Greece 460 A 140 140
195 Greece 461 C 140 140
196 Greece 462 A 140 140
197 Greece 463 G 140 140
198 Greece 464 C 140 140
199 Greece 465 C 140 140
200 Greece 466 C 140 140
201 Greece 467 T 140 140
202 Greece 468 A 140 140
203 Greece 469 T 140 140
204 Greece 470 G 140 140
205 Greece 471 T 140 140
206 Greece 472 G 140 140
207 Greece 473 T 140 140
208 Greece 474 T 140 140
209 Greece 475 C 140 140
210 Greece 476 A 140 140
211 Greece 477 T 140 140
212 Greece 478 C 140 140
213 Greece 479 A 140 140
214 Greece 480 A 140 140
215 Greece 481 A 140 140
216 Greece 482 C 140 140
217 Greece 483 G 140 140
218 Greece 484 T 140 140
219 Greece 485 T 140 140
220 Greece 486 C 140 140
221 Greece 487 G 140 140
222 Greece 488 G 140 140
223 Greece 489 A 140 140
224 Greece 490 T 140 140
225 Greece 491 G 140 140
226 Greece 492 C 140 140
227 Greece 493 T 140 140
228 Greece 494 C 140 140
229 Greece 495 G 140 140
230 Greece 496 A 140 140
231 Greece 497 A 140 140
232 Greece 498 C 140 140
233 Greece 499 T 140 140
234 Greece 500 G 140 140
235 Greece 501 C 140 140
236 Greece 502 A 140 140
237 Greece 503 C 140 140
238 Greece 504 C 140 140
239 Greece 505 T 138 138
240 Greece 506 C 138 138
241 Greece 507 A 138 138
242 Greece 508 T 138 138
243 Greece 509 G 138 138
244 Greece 510 G 138 138
245 Greece 511 T 138 138
246 Greece 512 C 138 138
247 Greece 513 A 138 138
248 Greece 514 T 138 138
249 Greece 515 G 138 138
250 Greece 516 T 138 138
251 Greece 517 T 138 138
252 Greece 518 A 138 138
253 Greece 519 T 138 138
254 Greece 520 G 138 138
255 Greece 521 G 138 138
256 Greece 522 T 138 138
257 Greece 523 T 138 138
258 Greece 524 G 138 138
259 Greece 525 A 138 138
260 Greece 526 G 138 138
261 Greece 527 C 138 138
262 Greece 528 T 138 138
263 Greece 529 G 138 138
264 Greece 530 G 138 138
265 Greece 531 T 138 138
266 Greece 532 A 138 138
267 Greece 533 G 138 138
268 Greece 534 C 138 138
269 Greece 535 A 138 138
270 Greece 536 G 138 138
271 Greece 537 A 138 138
272 Greece 538 A 138 138
273 Greece 539 C 138 138
274 Greece 540 T 138 138
275 Greece 541 C 138 138
276 Greece 542 G 138 138
277 Greece 543 A 138 138
278 Greece 544 A 138 138
279 Greece 545 G 138 138
280 Greece 546 G 138 138
281 Greece 547 C 138 138
282 Greece 548 A 138 138
283 Greece 549 T 138 138
284 Greece 550 T 138 138
285 Greece 551 C 138 138
286 Greece 552 A 138 138
287 Greece 553 G 138 138
288 Greece 554 T 138 138
289 Greece 555 A 138 138
290 Greece 556 C 138 138
291 Greece 557 G 138 138
292 Greece 558 G 138 138
293 Greece 559 T 138 138
294 Greece 560 C 138 138
295 Greece 561 G 138 138
296 Greece 562 T 138 138
297 Greece 563 A 138 138
298 Greece 564 G 138 138
299 Greece 565 T 140 140
300 Greece 566 G 140 140
301 Greece 567 G 140 140
302 Greece 568 T 140 140
303 Greece 569 G 140 140
304 Greece 570 A 140 140
305 Greece 571 G 140 140
306 Greece 572 A 140 140
307 Greece 573 C 140 140
308 Greece 574 A 140 140
309 Greece 575 C 140 140
310 Greece 576 T 140 140
311 Greece 577 T 140 140
312 Greece 578 G 140 140
313 Greece 579 G 140 140
314 Greece 580 T 140 140
315 Greece 581 G 140 140
316 Greece 582 T 140 140
317 Greece 583 C 140 140
318 Greece 584 C 140 140
319 Greece 585 T 140 140
320 Greece 586 T 140 140
321 Greece 587 G 140 140
322 Greece 588 T 140 140
323 Greece 589 C 140 140
324 Greece 590 C 140 140
325 Greece 591 C 140 140
326 Greece 592 T 140 140
327 Greece 593 C 140 140
328 Greece 594 A 140 140
329 Greece 595 T C 140 139 His110His
330 Greece 596 G 140 140
331 Greece 597 T 140 140
332 Greece 598 G 140 140
333 Greece 599 G 140 140
334 Greece 600 G 140 140
335 Greece 601 C 140 140
336 Greece 602 G 140 140
337 Greece 603 A 140 140
338 Greece 604 A 140 140
339 Greece 605 A 140 140
340 Greece 606 T 140 140
341 Greece 607 A 140 140
342 Greece 608 C 140 140
343 Greece 609 C 140 140
344 Greece 610 A 140 140
345 Greece 611 G 140 140
346 Greece 612 T 140 140
347 Greece 613 G 140 140
348 Greece 614 G 140 140
349 Greece 615 C 140 140
350 Greece 616 T 140 140
351 Greece 617 T 140 140
352 Greece 618 A 140 140
353 Greece 619 C 140 140
354 Greece 620 C 140 140
355 Greece 621 G 140 140
356 Greece 622 C 140 140
357 Greece 623 A 140 140
358 Greece 624 A 140 140
359 Greece 625 G 140 140
360 Greece 626 G 140 140
361 Greece 627 T 140 140
362 Greece 628 T 140 140
363 Greece 629 C 140 140
364 Greece 630 T 140 140
365 Greece 631 T 140 140
366 Greece 632 C 140 140
367 Greece 633 T 140 140
368 Greece 634 T 140 140
369 Greece 635 C 140 139
370 Greece 636 G 140 140
371 Greece 637 T 140 140
372 Greece 638 A 140 140
373 Greece 639 A 140 140
374 Greece 640 G 140 140
375 Greece 641 A 140 140
376 Greece 642 A 140 140
377 Greece 643 C 140 140
378 Greece 644 G 140 140
379 Greece 645 G 140 140
380 Greece 646 T 140 140
381 Greece 647 A 140 140
382 Greece 648 A 140 140
383 Greece 649 T 140 140
384 Greece 650 A 140 140
385 Greece 651 A 140 140
386 Greece 652 A 140 140
387 Greece 653 G 140 140
388 Greece 654 G 140 140
389 Greece 655 A 140 140
390 Greece 656 G 140 140
391 Greece 657 C 140 140
392 Greece 658 T 140 140
393 Greece 659 G 140 140
394 Greece 660 G 140 140
395 Greece 661 T 140 140
396 Greece 662 G 140 140
397 Greece 663 G 140 140
398 Greece 664 C 140 140
399 Greece 665 C 140 140
400 Greece 666 A 140 140
401 Greece 667 T 140 140
402 Greece 668 A 140 140
403 Greece 669 G 140 140
404 Greece 670 T 140 140
405 Greece 671 T 140 140
406 Greece 672 A 140 140
407 Greece 673 C 140 140
408 Greece 674 G 140 140
409 Greece 675 G 140 140
410 Greece 676 C 140 140
411 Greece 677 G 140 140
412 Greece 678 C 140 140
413 Greece 679 C 140 140
414 Greece 680 G 140 140
415 Greece 681 A 140 140
416 Greece 682 T 140 140
417 Greece 683 C 140 140
418 Greece 684 T 140 140
419 Greece 685 A 140 140
420 Greece 686 A 140 140
421 Greece 687 A 140 140
422 Greece 688 G 140 140
423 Greece 689 T 140 140
424 Greece 690 C 140 140
425 Greece 691 A 140 140
426 Greece 692 T 140 140
427 Greece 693 T 140 140
428 Greece 694 T 140 140
429 Greece 695 G 140 140
430 Greece 696 A 140 140
431 Greece 697 C 140 140
432 Greece 698 T 140 140
433 Greece 699 T 140 140
434 Greece 700 A 140 140
435 Greece 701 G 140 140
436 Greece 702 G 140 140
437 Greece 703 C 140 140
438 Greece 704 G 140 140
439 Greece 705 A 140 140
440 Greece 706 C 140 140
441 Greece 707 G 140 140
442 Greece 708 A 140 140
443 Greece 709 G 140 140
444 Greece 710 C 140 140
445 Greece 711 T 140 140
446 Greece 712 T 140 140
447 Greece 713 G 140 140
448 Greece 714 G 140 140
449 Greece 715 C 140 140
450 Greece 716 A 140 140
451 Greece 717 C 140 140
452 Greece 718 T 140 140
453 Greece 719 G 140 140
454 Greece 720 A 140 140
455 Greece 721 T 140 140
456 Greece 722 C 140 140
457 Greece 723 C 140 140
458 Greece 724 T 140 140
459 Greece 725 T 140 140
460 Greece 726 A 140 140
461 Greece 727 T 140 140
462 Greece 728 G 140 140
463 Greece 729 A 140 140
464 Greece 730 A 140 140
465 Greece 731 G 140 140
466 Greece 732 A 140 140
467 Greece 733 T 140 140
468 Greece 734 T 140 140
469 Greece 735 T 140 140
470 Greece 736 T 140 140
471 Greece 737 C 140 140
472 Greece 738 A 140 140
473 Greece 739 A 140 140
474 Greece 740 G 140 140
475 Greece 741 A 140 140
476 Greece 742 A 140 140
477 Greece 743 A 140 140
478 Greece 744 A 140 140
479 Greece 745 C 140 140
480 Greece 746 T 140 140
481 Greece 747 G 140 140
482 Greece 748 G 140 140
483 Greece 749 A 140 140
484 Greece 750 A 140 140
485 Greece 751 C 140 140
486 Greece 752 A 140 140
487 Greece 753 C 140 140
488 Greece 754 T 140 140
489 Greece 755 A 140 140
490 Greece 756 A 140 140
491 Greece 757 A 140 140
492 Greece 758 C 140 140
493 Greece 759 A 140 140
494 Greece 760 T 140 140
495 Greece 761 A 140 140
496 Greece 762 G 140 140
497 Greece 763 C 140 140
498 Greece 764 A 140 140
499 Greece 765 G 140 140
500 Greece 766 T 140 140
501 Greece 767 G 140 140
502 Greece 768 G 140 140
503 Greece 769 T 140 140
504 Greece 770 G 140 140
505 Greece 771 T 140 140
506 Greece 772 T 140 140
507 Greece 773 A 140 140
508 Greece 774 C 140 140
509 Greece 775 C 140 140
510 Greece 776 C 140 140
511 Greece 777 G 140 140
512 Greece 778 T 140 140
513 Greece 779 G 140 140
514 Greece 780 A 140 140
515 Greece 781 A 140 140
516 Greece 782 C 140 140
517 Greece 783 T 140 140
518 Greece 784 C 140 140
519 Greece 785 A 140 140
520 Greece 786 T 140 140
521 Greece 787 G 140 140
522 Greece 788 C 140 140
523 Greece 789 G 140 140
524 Greece 790 T 140 140
525 Greece 791 G 140 140
526 Greece 792 A 140 140
527 Greece 793 G 140 140
528 Greece 794 C 140 140
529 Greece 795 T 140 140
530 Greece 796 T 140 140
531 Greece 797 A 140 140
532 Greece 798 A 140 140
533 Greece 799 C 140 140
534 Greece 800 G 140 140
535 Greece 801 G 140 140
536 Greece 802 A 140 140
537 Greece 803 G 140 140
538 Greece 804 G 140 140
539 Greece 805 G 140 140