National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   540                                        
?                                            
A   21                                        
C   3                                        
D   27                                        
E   54                                        
F   15                                        
G   66                                        
H   21                                       1
I   9                                        
K   27                                        
L   63                   2                    
M   9                                        
N   18                                        
P   24                                        
Q   21                                        
R   30                                        
S   30                                 1      
T   21                                        
V   63                                        
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Georgia 266 A 26 25
1 Georgia 267 T 26 25
2 Georgia 268 G 26 25
3 Georgia 269 G 26 25
4 Georgia 270 A 26 25
5 Georgia 271 G 26 25
6 Georgia 272 A 26 25
7 Georgia 273 G 26 25
8 Georgia 274 C 26 25
9 Georgia 275 C 26 25
10 Georgia 276 T 26 25
11 Georgia 277 T 26 25
12 Georgia 278 G 26 25
13 Georgia 279 T 26 25
14 Georgia 280 C 26 25
15 Georgia 281 C 26 25
16 Georgia 282 C 26 25
17 Georgia 283 T 26 25
18 Georgia 284 G 26 25
19 Georgia 285 G 26 25
20 Georgia 286 T 26 25
21 Georgia 287 T 26 25
22 Georgia 288 T 26 25
23 Georgia 289 C 26 25
24 Georgia 290 A 26 25
25 Georgia 291 A 26 25
26 Georgia 292 C 26 25
27 Georgia 293 G 26 25
28 Georgia 294 A 26 25
29 Georgia 295 G 26 25
30 Georgia 296 A 26 25
31 Georgia 297 A 26 25
32 Georgia 298 A 26 25
33 Georgia 299 A 26 25
34 Georgia 300 C 26 25
35 Georgia 301 A 26 25
36 Georgia 302 C 26 25
37 Georgia 303 A 26 25
38 Georgia 304 C 26 25
39 Georgia 305 G 26 25
40 Georgia 306 T 26 25
41 Georgia 307 C 26 25
42 Georgia 308 C 26 25
43 Georgia 309 A 26 25
44 Georgia 310 A 26 25
45 Georgia 311 C 26 25
46 Georgia 312 T 26 25
47 Georgia 313 C T 26 23 Leu16Leu
48 Georgia 314 A 26 25
49 Georgia 315 G 26 25
50 Georgia 316 T 26 25
51 Georgia 317 T 26 25
52 Georgia 318 T 26 25
53 Georgia 319 G 26 25
54 Georgia 320 C 26 25
55 Georgia 321 C 26 25
56 Georgia 322 T 26 25
57 Georgia 323 G 26 25
58 Georgia 324 T 26 25
59 Georgia 325 T 26 25
60 Georgia 326 T 26 25
61 Georgia 327 T 26 25
62 Georgia 328 A 26 25
63 Georgia 329 C 26 25
64 Georgia 330 A 26 25
65 Georgia 331 G 26 25
66 Georgia 332 G 26 25
67 Georgia 333 T 26 25
68 Georgia 334 T 26 25
69 Georgia 335 C 26 25
70 Georgia 336 G 26 25
71 Georgia 337 C 26 25
72 Georgia 338 G 26 25
73 Georgia 339 A 26 25
74 Georgia 340 C 26 25
75 Georgia 341 G 26 25
76 Georgia 342 T 26 25
77 Georgia 343 G 26 25
78 Georgia 344 C 26 25
79 Georgia 345 T 26 25
80 Georgia 346 C 26 25
81 Georgia 347 G 26 25
82 Georgia 348 T 26 25
83 Georgia 349 A 26 25
84 Georgia 350 C 26 25
85 Georgia 351 G 26 25
86 Georgia 352 T 26 25
87 Georgia 353 G 26 25
88 Georgia 354 G 26 25
89 Georgia 355 C 26 25
90 Georgia 356 T 26 25
91 Georgia 357 T 26 25
92 Georgia 358 T 26 25
93 Georgia 359 G 26 25
94 Georgia 360 G 26 25
95 Georgia 361 A 26 25
96 Georgia 362 G 26 25
97 Georgia 363 A 26 25
98 Georgia 364 C 26 25
99 Georgia 365 T A 26 23 Ser34Thr
100 Georgia 366 C 26 25
101 Georgia 367 C 26 25
102 Georgia 368 G 26 25
103 Georgia 369 T 26 25
104 Georgia 370 G 26 25
105 Georgia 371 G 26 25
106 Georgia 372 A 26 25
107 Georgia 373 G 26 25
108 Georgia 374 G 26 25
109 Georgia 375 A 26 25
110 Georgia 376 G 26 25
111 Georgia 377 G 26 25
112 Georgia 378 T 26 25
113 Georgia 379 C 26 25
114 Georgia 380 T 26 25
115 Georgia 381 T 26 25
116 Georgia 382 A 26 25
117 Georgia 383 T 26 25
118 Georgia 384 C 26 25
119 Georgia 385 A 26 25
120 Georgia 386 G 26 25
121 Georgia 387 A 26 25
122 Georgia 388 G 26 25
123 Georgia 389 G 26 25
124 Georgia 390 C 26 25
125 Georgia 391 A 26 25
126 Georgia 392 C 26 25
127 Georgia 393 G 26 25
128 Georgia 394 T 26 25
129 Georgia 395 C 26 25
130 Georgia 396 A 26 25
131 Georgia 397 A 26 25
132 Georgia 398 C T 26 24 His45Tyr
133 Georgia 399 A 26 25
134 Georgia 400 T 26 25
135 Georgia 401 C 26 25
136 Georgia 402 T 26 25
137 Georgia 403 T 26 25
138 Georgia 404 A 26 25
139 Georgia 405 A 26 25
140 Georgia 406 A 26 25
141 Georgia 407 G 26 25
142 Georgia 408 A 26 25
143 Georgia 409 T 26 25
144 Georgia 410 G 26 25
145 Georgia 411 G 26 25
146 Georgia 412 C 26 25
147 Georgia 413 A 26 25
148 Georgia 414 C 26 25
149 Georgia 415 T 26 25
150 Georgia 416 T 26 25
151 Georgia 417 G 26 25
152 Georgia 418 T 26 25
153 Georgia 419 G 26 25
154 Georgia 420 G 26 25
155 Georgia 421 C 26 25
156 Georgia 422 T 26 25
157 Georgia 423 T 26 25
158 Georgia 424 A 26 25
159 Georgia 425 G 26 25
160 Georgia 426 T 26 25
161 Georgia 427 A 26 25
162 Georgia 428 G 26 25
163 Georgia 429 A 26 25
164 Georgia 430 A 26 25
165 Georgia 431 G 26 25
166 Georgia 432 T 26 25
167 Georgia 433 T 26 25
168 Georgia 434 G 26 25
169 Georgia 435 A 26 25
170 Georgia 436 A 26 25
171 Georgia 437 A 26 25
172 Georgia 438 A 26 25
173 Georgia 439 A 26 25
174 Georgia 440 G 26 25
175 Georgia 441 G 26 25
176 Georgia 442 C 26 25
177 Georgia 443 G 26 25
178 Georgia 444 T 26 25
179 Georgia 445 T 26 25
180 Georgia 446 T 26 25
181 Georgia 447 T 26 25
182 Georgia 448 G 26 25
183 Georgia 449 C 26 25
184 Georgia 450 C 26 25
185 Georgia 451 T 26 25
186 Georgia 452 C 26 25
187 Georgia 453 A 26 25
188 Georgia 454 A 26 25
189 Georgia 455 C 26 25
190 Georgia 456 T 26 25
191 Georgia 457 T 26 25
192 Georgia 458 G 26 25
193 Georgia 459 A 26 25
194 Georgia 460 A 26 25
195 Georgia 461 C 26 25
196 Georgia 462 A 26 25
197 Georgia 463 G 26 25
198 Georgia 464 C 26 25
199 Georgia 465 C 26 25
200 Georgia 466 C 26 25
201 Georgia 467 T 26 25
202 Georgia 468 A 26 25
203 Georgia 469 T 26 25
204 Georgia 470 G 26 25
205 Georgia 471 T 26 25
206 Georgia 472 G 26 25
207 Georgia 473 T 26 25
208 Georgia 474 T 26 25
209 Georgia 475 C 26 25
210 Georgia 476 A 26 25
211 Georgia 477 T 26 25
212 Georgia 478 C 26 25
213 Georgia 479 A 26 25
214 Georgia 480 A 26 25
215 Georgia 481 A 26 25
216 Georgia 482 C 26 25
217 Georgia 483 G 26 25
218 Georgia 484 T 26 25
219 Georgia 485 T 26 25
220 Georgia 486 C 26 25
221 Georgia 487 G 26 25
222 Georgia 488 G 26 25
223 Georgia 489 A 26 25
224 Georgia 490 T 26 25
225 Georgia 491 G 26 25
226 Georgia 492 C 26 25
227 Georgia 493 T 26 25
228 Georgia 494 C 26 25
229 Georgia 495 G 26 25
230 Georgia 496 A 26 25
231 Georgia 497 A 26 25
232 Georgia 498 C 26 25
233 Georgia 499 T 26 25
234 Georgia 500 G 26 25
235 Georgia 501 C 26 25
236 Georgia 502 A 26 25
237 Georgia 503 C 26 25
238 Georgia 504 C 26 25
239 Georgia 505 T 25 24
240 Georgia 506 C 25 24
241 Georgia 507 A 25 24
242 Georgia 508 T 25 24
243 Georgia 509 G 25 24
244 Georgia 510 G 25 24
245 Georgia 511 T 25 24
246 Georgia 512 C 25 24
247 Georgia 513 A 25 24
248 Georgia 514 T 25 24
249 Georgia 515 G 25 24
250 Georgia 516 T 25 24
251 Georgia 517 T 25 24
252 Georgia 518 A 25 24
253 Georgia 519 T 25 24
254 Georgia 520 G 25 24
255 Georgia 521 G 25 24
256 Georgia 522 T 25 24
257 Georgia 523 T 25 24
258 Georgia 524 G 25 24
259 Georgia 525 A 25 24
260 Georgia 526 G 25 24
261 Georgia 527 C 25 24
262 Georgia 528 T 25 24
263 Georgia 529 G 25 24
264 Georgia 530 G 25 24
265 Georgia 531 T 25 24
266 Georgia 532 A 25 24
267 Georgia 533 G 25 24
268 Georgia 534 C 25 24
269 Georgia 535 A 25 24
270 Georgia 536 G 25 24
271 Georgia 537 A 25 24
272 Georgia 538 A 25 24
273 Georgia 539 C 25 24
274 Georgia 540 T 25 24
275 Georgia 541 C T 25 22 Leu92Leu
276 Georgia 542 G 25 24
277 Georgia 543 A 25 24
278 Georgia 544 A 25 24
279 Georgia 545 G 25 24
280 Georgia 546 G 25 24
281 Georgia 547 C 25 24
282 Georgia 548 A 25 24
283 Georgia 549 T 25 24
284 Georgia 550 T 25 24
285 Georgia 551 C 25 24
286 Georgia 552 A 25 24
287 Georgia 553 G 25 24
288 Georgia 554 T 25 24
289 Georgia 555 A 25 24
290 Georgia 556 C 25 24
291 Georgia 557 G 25 24
292 Georgia 558 G 25 24
293 Georgia 559 T 25 24
294 Georgia 560 C 25 24
295 Georgia 561 G 25 24
296 Georgia 562 T 25 24
297 Georgia 563 A 25 24
298 Georgia 564 G 25 24
299 Georgia 565 T 26 25
300 Georgia 566 G 26 25
301 Georgia 567 G 26 25
302 Georgia 568 T 26 25
303 Georgia 569 G 26 25
304 Georgia 570 A 26 25
305 Georgia 571 G 26 25
306 Georgia 572 A 26 25
307 Georgia 573 C 26 25
308 Georgia 574 A 26 25
309 Georgia 575 C 26 25
310 Georgia 576 T 26 25
311 Georgia 577 T 26 25
312 Georgia 578 G 26 25
313 Georgia 579 G 26 25
314 Georgia 580 T 26 25
315 Georgia 581 G 26 25
316 Georgia 582 T 26 25
317 Georgia 583 C 26 25
318 Georgia 584 C 26 25
319 Georgia 585 T 26 25
320 Georgia 586 T 26 25
321 Georgia 587 G 26 25
322 Georgia 588 T 26 25
323 Georgia 589 C 26 25
324 Georgia 590 C 26 25
325 Georgia 591 C 26 25
326 Georgia 592 T 26 25
327 Georgia 593 C 26 25
328 Georgia 594 A 26 25
329 Georgia 595 T 26 25
330 Georgia 596 G 26 25
331 Georgia 597 T 26 25
332 Georgia 598 G 26 25
333 Georgia 599 G 26 25
334 Georgia 600 G 26 25
335 Georgia 601 C 26 25
336 Georgia 602 G 26 25
337 Georgia 603 A 26 25
338 Georgia 604 A 26 25
339 Georgia 605 A 26 25
340 Georgia 606 T 26 25
341 Georgia 607 A 26 25
342 Georgia 608 C 26 25
343 Georgia 609 C 26 25
344 Georgia 610 A 26 25
345 Georgia 611 G 26 25
346 Georgia 612 T 26 25
347 Georgia 613 G 26 25
348 Georgia 614 G 26 25
349 Georgia 615 C 26 25
350 Georgia 616 T 26 25
351 Georgia 617 T 26 25
352 Georgia 618 A 26 25
353 Georgia 619 C 26 25
354 Georgia 620 C 26 25
355 Georgia 621 G 26 25
356 Georgia 622 C 26 25
357 Georgia 623 A 26 25
358 Georgia 624 A 26 25
359 Georgia 625 G 26 25
360 Georgia 626 G 26 25
361 Georgia 627 T 26 25
362 Georgia 628 T 26 25
363 Georgia 629 C 26 25
364 Georgia 630 T 26 25
365 Georgia 631 T 26 25
366 Georgia 632 C 26 25
367 Georgia 633 T 26 25
368 Georgia 634 T 26 25
369 Georgia 635 C 26 25
370 Georgia 636 G 26 25
371 Georgia 637 T 26 25
372 Georgia 638 A 26 25
373 Georgia 639 A 26 25
374 Georgia 640 G 26 25
375 Georgia 641 A 26 25
376 Georgia 642 A 26 25
377 Georgia 643 C 26 25
378 Georgia 644 G 26 25
379 Georgia 645 G 26 25
380 Georgia 646 T 26 25
381 Georgia 647 A 26 25
382 Georgia 648 A 26 25
383 Georgia 649 T 26 25
384 Georgia 650 A 26 25
385 Georgia 651 A 26 25
386 Georgia 652 A 26 25
387 Georgia 653 G 26 25
388 Georgia 654 G 26 25
389 Georgia 655 A 26 25
390 Georgia 656 G 26 25
391 Georgia 657 C 26 25
392 Georgia 658 T 26 25
393 Georgia 659 G 26 25
394 Georgia 660 G 26 25
395 Georgia 661 T 26 25
396 Georgia 662 G 26 25
397 Georgia 663 G 26 25
398 Georgia 664 C 26 25
399 Georgia 665 C 26 25
400 Georgia 666 A 26 25
401 Georgia 667 T 26 25
402 Georgia 668 A 26 25
403 Georgia 669 G 26 25
404 Georgia 670 T 26 25
405 Georgia 671 T 26 25
406 Georgia 672 A 26 25
407 Georgia 673 C 26 25
408 Georgia 674 G 26 25
409 Georgia 675 G 26 25
410 Georgia 676 C 26 25
411 Georgia 677 G 26 25
412 Georgia 678 C 26 25
413 Georgia 679 C 26 25
414 Georgia 680 G 26 25
415 Georgia 681 A 26 25
416 Georgia 682 T 26 25
417 Georgia 683 C 26 25
418 Georgia 684 T 26 25
419 Georgia 685 A 26 25
420 Georgia 686 A 26 25
421 Georgia 687 A 26 25
422 Georgia 688 G 26 25
423 Georgia 689 T 26 25
424 Georgia 690 C 26 25
425 Georgia 691 A 26 25
426 Georgia 692 T 26 25
427 Georgia 693 T 26 25
428 Georgia 694 T 26 25
429 Georgia 695 G 26 25
430 Georgia 696 A 26 25
431 Georgia 697 C 26 25
432 Georgia 698 T 26 25
433 Georgia 699 T 26 25
434 Georgia 700 A 26 25
435 Georgia 701 G 26 25
436 Georgia 702 G 26 25
437 Georgia 703 C 26 25
438 Georgia 704 G 26 25
439 Georgia 705 A 26 25
440 Georgia 706 C 26 25
441 Georgia 707 G 26 25
442 Georgia 708 A 26 25
443 Georgia 709 G 26 25
444 Georgia 710 C 26 25
445 Georgia 711 T 26 25
446 Georgia 712 T 26 25
447 Georgia 713 G 26 25
448 Georgia 714 G 26 25
449 Georgia 715 C 26 25
450 Georgia 716 A 26 25
451 Georgia 717 C 26 25
452 Georgia 718 T 26 25
453 Georgia 719 G 26 25
454 Georgia 720 A 26 25
455 Georgia 721 T 26 25
456 Georgia 722 C 26 25
457 Georgia 723 C 26 25
458 Georgia 724 T 26 25
459 Georgia 725 T 26 25
460 Georgia 726 A 26 25
461 Georgia 727 T 26 25
462 Georgia 728 G 26 25
463 Georgia 729 A 26 25
464 Georgia 730 A 26 25
465 Georgia 731 G 26 25
466 Georgia 732 A 26 25
467 Georgia 733 T 26 25
468 Georgia 734 T 26 25
469 Georgia 735 T 26 25
470 Georgia 736 T 26 25
471 Georgia 737 C 26 25
472 Georgia 738 A 26 25
473 Georgia 739 A 26 25
474 Georgia 740 G 26 25
475 Georgia 741 A 26 25
476 Georgia 742 A 26 25
477 Georgia 743 A 26 25
478 Georgia 744 A 26 25
479 Georgia 745 C 26 25
480 Georgia 746 T 26 25
481 Georgia 747 G 26 25
482 Georgia 748 G 26 25
483 Georgia 749 A 26 25
484 Georgia 750 A 26 25
485 Georgia 751 C 26 25
486 Georgia 752 A 26 25
487 Georgia 753 C 26 25
488 Georgia 754 T 26 25
489 Georgia 755 A 26 25
490 Georgia 756 A 26 25
491 Georgia 757 A 26 25
492 Georgia 758 C 26 25
493 Georgia 759 A 26 25
494 Georgia 760 T 26 25
495 Georgia 761 A 26 25
496 Georgia 762 G 26 25
497 Georgia 763 C 26 25
498 Georgia 764 A 26 25
499 Georgia 765 G 26 25
500 Georgia 766 T 26 25
501 Georgia 767 G 26 25
502 Georgia 768 G 26 25
503 Georgia 769 T 26 25
504 Georgia 770 G 26 25
505 Georgia 771 T 26 25
506 Georgia 772 T 26 25
507 Georgia 773 A 26 25
508 Georgia 774 C 26 25
509 Georgia 775 C 26 25
510 Georgia 776 C 26 25
511 Georgia 777 G 26 25
512 Georgia 778 T 26 25
513 Georgia 779 G 26 25
514 Georgia 780 A 26 25
515 Georgia 781 A 26 25
516 Georgia 782 C 26 25
517 Georgia 783 T 26 25
518 Georgia 784 C 26 25
519 Georgia 785 A 26 25
520 Georgia 786 T 26 25
521 Georgia 787 G 26 25
522 Georgia 788 C 26 25
523 Georgia 789 G 26 25
524 Georgia 790 T 26 25
525 Georgia 791 G 26 25
526 Georgia 792 A 26 25
527 Georgia 793 G 26 25
528 Georgia 794 C 26 25
529 Georgia 795 T 26 25
530 Georgia 796 T 26 25
531 Georgia 797 A 26 25
532 Georgia 798 A 26 25
533 Georgia 799 C 26 25
534 Georgia 800 G 26 25
535 Georgia 801 G 26 25
536 Georgia 802 A 26 25
537 Georgia 803 G 26 25
538 Georgia 804 G 26 25
539 Georgia 805 G 26 25