National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   540                                        
?                                            
A   21 1                             1 1      
C   3                                        
D   27     2     3                            
E   54 1     2   1     3                      
F   15         1         1                    
G   66   3 3     6                   2   1    
H   21             2                         3
I   9               1     1             1    
K   27                 1     1     2          
L   63         4     2   9                    
M   9                                   1    
N   18                 1     3       1        
P   24                               2        
Q   21             1                          
R   30   4               1         3          
S   30         1         2           4        
T   21                                 1      
V   63         1     1     2             10    
W   3                                        
Y   15   1                                   2

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 France 266 A 4095 4095
1 France 267 T 4101 4101
2 France 268 G 4101 4100
3 France 269 G 4102 4101
4 France 270 A 4102 4101
5 France 271 G 4102 4102
6 France 272 A 4102 4102
7 France 273 G 4108 4107
8 France 274 C 4108 4107
9 France 275 C 4108 4108
10 France 276 T 4108 4108
11 France 277 T 4108 4106
12 France 278 G 4109 4109
13 France 279 T 4110 4110
14 France 280 C 4112 4112
15 France 281 C 4120 4120
16 France 282 C 4120 4120
17 France 283 T 4120 4120
18 France 284 G 4121 4121
19 France 285 G T 4123 4122 Gly7Val
20 France 286 T 4123 4121
21 France 287 T 4123 4121
22 France 288 T 4123 4123
23 France 289 C 4123 4122
24 France 290 A 4123 4123
25 France 291 A 4124 4124
26 France 292 C 4125 4125
27 France 293 G 4126 4126
28 France 294 A 4128 4128
29 France 295 G 4128 4128
30 France 296 A 4128 4128
31 France 297 A 4129 4129
32 France 298 A 4129 4126
33 France 299 A 4129 4128
34 France 300 C 4129 4128
35 France 301 A G 4129 4126 Thr12Thr
36 France 302 C 4129 4129
37 France 303 A 4129 4127
38 France 304 C 4136 4136
39 France 305 G 4138 4137
40 France 306 T 4138 4137
41 France 307 C T 4139 4138 Val14Val
42 France 308 C 4140 4139
43 France 309 A 4140 4139
44 France 310 A 4141 4140
45 France 311 C 4142 4142
46 France 312 T 4142 4142
47 France 313 C T 4142 4073 Leu16Leu
48 France 314 A 4142 4141
49 France 315 G 4143 4142
50 France 316 T 4143 4141
51 France 317 T 4143 4142
52 France 318 T 4143 4142
53 France 319 G 4144 4143
54 France 320 C 4144 4143
55 France 321 C 4146 4144
56 France 322 T 4146 4145
57 France 323 G 4153 4153
58 France 324 T 4154 4152
59 France 325 T G 4154 4150 Val20Val
60 France 326 T 4154 4153
61 France 327 T 4154 4153
62 France 328 A 4154 4152
63 France 329 C 4154 4151
64 France 330 A 4154 4153
65 France 331 G T 4159 4157 Gln22His
66 France 332 G 4159 4157
67 France 333 T 4159 4157
68 France 334 T 4159 4158
69 France 335 C T 4159 4154 Arg24Cys
70 France 336 G 4159 4158
71 France 337 C T 4160 4139 Arg24Arg
72 France 338 G 4162 4161
73 France 339 A 4162 4161
74 France 340 C 4162 4160
75 France 341 G 4165 4164
76 France 342 T 4165 4162
77 France 343 G T 4169 4166 Val26Val
78 France 344 C T 4169 4165 Leu27Phe
79 France 345 T 4169 4167
80 France 346 C T 4169 4163 Leu27Leu
81 France 347 G A 4169 4166 Val28Ile
82 France 348 T 4171 4168
83 France 349 A 4171 4169
84 France 350 C T 4172 4165 Arg29Cys
85 France 351 G 4172 4167
86 France 352 T 4173 4169
87 France 353 G A 4173 4166 Gly30Ser
88 France 354 G 4179 4173
89 France 355 C 4179 4172
90 France 356 T 4180 4175
91 France 357 T 4180 4175
92 France 358 T 4180 4175
93 France 359 G 4180 4174
94 France 360 G 4180 4172
95 France 361 A 4180 4173
96 France 362 G 4180 4173
97 France 363 A 4180 4170
98 France 364 C 4180 4170
99 France 365 T 4180 4170
100 France 366 C T 4183 4173 Ser34Phe
101 France 367 C 4183 4174
102 France 368 G A 4183 4173 Val35Met
103 France 369 T 4183 4172
104 France 370 G T,A 4183 4172 Val35Val-p.Val35Val
105 France 371 G 4183 4175
106 France 372 A 4183 4174
107 France 373 G 4183 4175
108 France 374 G 4183 4175
109 France 375 A 4183 4169
110 France 376 G 4188 4173
111 France 377 G 4191 4178
112 France 378 T 4191 4175
113 France 379 C 4191 4175
114 France 380 T C 4191 4172 Leu39Leu
115 France 381 T 4194 4179
116 France 382 A 4194 4179
117 France 383 T 4194 4178
118 France 384 C 4195 4181
119 France 385 A 4193 4178
120 France 386 G 4193 4174
121 France 387 A C 4193 4178 Glu41Ala
122 France 388 G 4192 4178
123 France 389 G 4192 4175
124 France 390 C 4193 4180
125 France 391 A 4193 4180
126 France 392 C T 4193 4179 Arg43Cys
127 France 393 G 4193 4181
128 France 394 T G 4193 4180 Arg43Arg
129 France 395 C 4193 4181
130 France 396 A 4193 4181
131 France 397 A 4193 4181
132 France 398 C T 4194 4167 His45Tyr
133 France 399 A 4196 4186
134 France 400 T 4199 4191
135 France 401 C T 4201 4192 Leu46Phe
136 France 402 T 4201 4191
137 France 403 T A 4201 4189 Leu46Leu
138 France 404 A 4201 4190
139 France 405 A G 4201 4189 Lys47Arg
140 France 406 A 4202 4191
141 France 407 G 4202 4192
142 France 408 A G 4201 4190 Asp48Gly
143 France 409 T 4202 4193
144 France 410 G T 4202 4190 Gly49Cys
145 France 411 G A 4202 4191 Gly49Asp
146 France 412 C 4203 4194
147 France 413 A 4203 4193
148 France 414 C 4203 4196
149 France 415 T 4203 4196
150 France 416 T 4203 4196
151 France 417 G 4203 4196
152 France 418 T 4203 4195
153 France 419 G 4203 4197
154 France 420 G 4203 4198
155 France 421 C T 4203 4197 Gly52Gly
156 France 422 T 4203 4198
157 France 423 T 4203 4199
158 France 424 A 4203 4200
159 France 425 G 4203 4200
160 France 426 T 4203 4199
161 France 427 A 4203 4200
162 France 428 G 4203 4200
163 France 429 A 4204 4201
164 France 430 A 4204 4201
165 France 431 G 4204 4202
166 France 432 T 4204 4202
167 France 433 T 4204 4200
168 France 434 G 4204 4200
169 France 435 A 4204 4200
170 France 436 A 4204 4200
171 France 437 A 4204 4199
172 France 438 A 4204 4200
173 France 439 A 4204 4200
174 France 440 G 4203 4198
175 France 441 G 4203 4198
176 France 442 C T 4203 4196 Gly59Gly
177 France 443 G 4203 4198
178 France 444 T 4203 4197
179 France 445 T C 4203 3928 Val60Val
180 France 446 T 4203 4198
181 France 447 T 4203 4199
182 France 448 G 4203 4199
183 France 449 C 4203 4199
184 France 450 C 4204 4200
185 France 451 T 4204 4199
186 France 452 C 4204 4199
187 France 453 A 4209 4205
188 France 454 A 4209 4205
189 France 455 C 4209 4205
190 France 456 T 4209 4204
191 France 457 T 4209 4206
192 France 458 G 4210 4205
193 France 459 A 4210 4206
194 France 460 A 4210 4207
195 France 461 C 4210 4207
196 France 462 A 4210 4205
197 France 463 G 4216 4211
198 France 464 C 4217 4214
199 France 465 C 4219 4216
200 France 466 C 4221 4216
201 France 467 T 4222 4216
202 France 468 A 4222 4217
203 France 469 T C 4222 4214 Tyr68Tyr
204 France 470 G 4224 4219
205 France 471 T 4224 4220
206 France 472 G A 4219 4211 Val69Val
207 France 473 T 4216 4210
208 France 474 T 4216 4210
209 France 475 C T 4221 4215 Phe70Phe
210 France 476 A G 4221 4215 Ile71Val
211 France 477 T 4221 4215
212 France 478 C 4221 4215
213 France 479 A 4221 4214
214 France 480 A 4221 4214
215 France 481 A G 4221 4212 Lys72Lys
216 France 482 C 4223 4216
217 France 483 G 4224 4218
218 France 484 T 4224 4216
219 France 485 T 4224 4216
220 France 486 C T 4224 4216 Ser74Leu
221 France 487 G A,T 4224 4207 Ser74Ser-p.Ser74Ser
222 France 488 G 4224 4217
223 France 489 A 4224 4217
224 France 490 T 4225 4218
225 France 491 G 4225 4217
226 France 492 C 4226 4220
227 France 493 T 4226 4220
228 France 494 C 4226 4220
229 France 495 G 4227 4221
230 France 496 A 4227 4219
231 France 497 A 4227 4220
232 France 498 C 4228 4222
233 France 499 T 4228 4222
234 France 500 G 4228 4222
235 France 501 C 4227 4221
236 France 502 A 4227 4220
237 France 503 C T 4232 4192 Pro80Ser
238 France 504 C 4232 4228
239 France 505 T 4209 4203
240 France 506 C 4209 4203
241 France 507 A 4209 4202
242 France 508 T C 4209 4201 His81His
243 France 509 G A 4209 4204 Gly82Ser
244 France 510 G 4210 4205
245 France 511 T C 4210 4200 Gly82Gly
246 France 512 C 4210 4203
247 France 513 A 4210 4202
248 France 514 T C 4215 4207 His83His
249 France 515 G 4215 4209
250 France 516 T 4217 4210
251 France 517 T 4217 4209
252 France 518 A G 4217 4207 Met85Val
253 France 519 T 4215 4205
254 France 520 G 4215 4205
255 France 521 G T 4215 4205 Val86Phe
256 France 522 T 4215 4206
257 France 523 T 4213 4202
258 France 524 G 4213 4201
259 France 525 A 4213 4200
260 France 526 G 4213 4202
261 France 527 C 4213 4201
262 France 528 T 4213 4202
263 France 529 G T 4213 4199 Leu88Leu
264 France 530 G 4213 4202
265 France 531 T 4213 4202
266 France 532 A 4213 4203
267 France 533 G T 4212 4201 Ala90Ser
268 France 534 C 4212 4204
269 France 535 A 4212 4203
270 France 536 G 4213 4203
271 France 537 A G 4213 4203 Glu91Gly
272 France 538 A 4214 4206
273 France 539 C T 4214 4201 Leu92Phe
274 France 540 T 4214 4206
275 France 541 C T 4214 4202 Leu92Leu
276 France 542 G A 4214 4204 Glu93Lys
277 France 543 A 4215 4206
278 France 544 A 4215 4207
279 France 545 G 4216 4209
280 France 546 G 4218 4211
281 France 547 C 4217 4211
282 France 548 A 4219 4213
283 France 549 T 4219 4213
284 France 550 T C 4219 4212 Ile95Ile
285 France 551 C 4219 4215
286 France 552 A 4219 4216
287 France 553 G 4220 4216
288 France 554 T 4219 4216
289 France 555 A 4219 4216
290 France 556 C 4219 4215
291 France 557 G 4220 4214
292 France 558 G 4223 4219
293 France 559 T C 4223 4217 Gly98Gly
294 France 560 C T 4220 4216 Arg99Cys
295 France 561 G T 4220 4217 Arg99Leu
296 France 562 T 4219 4216
297 France 563 A 4219 4217
298 France 564 G 4221 4220
299 France 565 T 4245 4244
300 France 566 G 4245 4244
301 France 567 G 4242 4240
302 France 568 T 4239 4233
303 France 569 G A 4239 4221 Glu102Lys
304 France 570 A 4239 4234
305 France 571 G A 4241 4193 Glu102Glu
306 France 572 A 4241 4235
307 France 573 C 4241 4235
308 France 574 A 4241 4235
309 France 575 C 4243 4237
310 France 576 T 4242 4235
311 France 577 T 4242 4235
312 France 578 G 4242 4235
313 France 579 G 4243 4236
314 France 580 T C 4244 4228 Gly105Gly
315 France 581 G 4244 4238
316 France 582 T 4244 4237
317 France 583 C T 4244 4233 Val106Val
318 France 584 C 4243 4237
319 France 585 T 4242 4237
320 France 586 T A 4242 4235 Leu107Leu
321 France 587 G 4243 4237
322 France 588 T 4243 4238
323 France 589 C T 4243 4239 Val108Val
324 France 590 C 4243 4239
325 France 591 C 4242 4239
326 France 592 T 4242 4239
327 France 593 C T 4242 4234 His110Tyr
328 France 594 A 4242 4239
329 France 595 T 4243 4239
330 France 596 G A 4243 4238 Val111Met
331 France 597 T 4238 4235
332 France 598 G 4238 4235
333 France 599 G T 4238 4234 Gly112Cys
334 France 600 G 4238 4235
335 France 601 C T 4238 4232 Gly112Gly
336 France 602 G 4238 4235
337 France 603 A 4239 4233
338 France 604 A 4239 4235
339 France 605 A 4238 4234
340 France 606 T 4238 4234
341 France 607 A G 4239 4234 Ile114Met
342 France 608 C 4239 4236
343 France 609 C 4238 4235
344 France 610 A 4237 4235
345 France 611 G 4237 4235
346 France 612 T 4237 4234
347 France 613 G 4238 4234
348 France 614 G 4238 4234
349 France 615 C 4239 4236
350 France 616 T 4238 4235
351 France 617 T 4237 4227
352 France 618 A G 4237 4227 Tyr118Cys
353 France 619 C T 4238 4234 Tyr118Tyr
354 France 620 C 4238 4236
355 France 621 G 4238 4237
356 France 622 C 4238 4236
357 France 623 A 4237 4236
358 France 624 A 4238 4237
359 France 625 G T 4238 4234 Lys120Asn
360 France 626 G 4238 4237
361 France 627 T 4236 4235
362 France 628 T 4236 4235
363 France 629 C T 4236 4234 Leu122Phe
364 France 630 T 4236 4234
365 France 631 T 4236 4235
366 France 632 C A 4236 4234 Leu123Ile
367 France 633 T 4236 4235
368 France 634 T 4236 4234
369 France 635 C 4235 4234
370 France 636 G 4235 4234
371 France 637 T 4235 4234
372 France 638 A 4235 4234
373 France 639 A G 4235 4233 Lys125Arg
374 France 640 G 4235 4234
375 France 641 A 4234 4232
376 France 642 A G 4234 4231 Asn126Ser
377 France 643 C T 4235 4229 Asn126Asn
378 France 644 G 4235 4232
379 France 645 G 4238 4235
380 France 646 T 4238 4234
381 France 647 A 4238 4235
382 France 648 A 4238 4234
383 France 649 T 4240 4237
384 France 650 A 4239 4236
385 France 651 A 4239 4236
386 France 652 A 4238 4234
387 France 653 G 4238 4234
388 France 654 G 4237 4233
389 France 655 A 4233 4227
390 France 656 G 4233 4227
391 France 657 C 4233 4227
392 France 658 T C 4231 4224 Ala131Ala
393 France 659 G 4231 4225
394 France 660 G A 4231 4224 Gly132Asp
395 France 661 T 4231 4225
396 France 662 G 4231 4225
397 France 663 G 4231 4225
398 France 664 C 4231 4225
399 France 665 C 4231 4225
400 France 666 A 4230 4224
401 France 667 T 4231 4228
402 France 668 A 4231 4228
403 France 669 G 4231 4229
404 France 670 T C 4231 4227 Ser135Ser
405 France 671 T 4231 4227
406 France 672 A 4231 4225
407 France 673 C 4231 4227
408 France 674 G 4231 4226
409 France 675 G A 4231 4225 Gly137Asp
410 France 676 C 4231 4227
411 France 677 G A 4230 4225 Ala138Thr
412 France 678 C 4230 4226
413 France 679 C 4230 4225
414 France 680 G 4230 4225
415 France 681 A G 4232 4228 Asp139Gly
416 France 682 T C 4232 4221 Asp139Asp
417 France 683 C T 4232 4221 Leu140Leu
418 France 684 T 4231 4228
419 France 685 A 4231 4228
420 France 686 A 4215 4208
421 France 687 A 4215 4208
422 France 688 G 4215 4208
423 France 689 T 4214 4204
424 France 690 C T 4214 4201 Ser142Leu
425 France 691 A 4214 4204
426 France 692 T C 4214 4203 Phe143Leu
427 France 693 T 4214 4204
428 France 694 T 4212 4202
429 France 695 G 4212 4206
430 France 696 A 4212 4205
431 France 697 C 4212 4207
432 France 698 T 4211 4206
433 France 699 T 4210 4205
434 France 700 A 4210 4205
435 France 701 G 4209 4204
436 France 702 G 4209 4203
437 France 703 C 4208 4203
438 France 704 G 4207 4203
439 France 705 A 4207 4203
440 France 706 C T 4207 4202 Asp147Asp
441 France 707 G A 4207 4201 Glu148Lys
442 France 708 A 4207 4203
443 France 709 G 4207 4203
444 France 710 C A 4207 4202 Leu149Ile
445 France 711 T 4207 4203
446 France 712 T C 4207 4201 Leu149Leu
447 France 713 G T 4207 4200 Gly150Cys
448 France 714 G 4207 4203
449 France 715 C 4207 4203
450 France 716 A 4207 4204
451 France 717 C 4208 4204
452 France 718 T 4205 4199
453 France 719 G 4205 4200
454 France 720 A 4205 4199
455 France 721 T 4205 4202
456 France 722 C T 4205 4200 Pro153Ser
457 France 723 C 4202 4199
458 France 724 T 4201 4198
459 France 725 T 4201 4198
460 France 726 A 4201 4199
461 France 727 T 4201 4199
462 France 728 G 4201 4199
463 France 729 A 4201 4197
464 France 730 A G 4201 4196 Glu155Glu
465 France 731 G 4201 4197
466 France 732 A G 4201 4197 Asp156Gly
467 France 733 T 4201 4197
468 France 734 T 4201 4197
469 France 735 T 4201 4198
470 France 736 T 4201 4198
471 France 737 C 4201 4196
472 France 738 A 4201 4197
473 France 739 A 4201 4198
474 France 740 G 4201 4198
475 France 741 A 4201 4198
476 France 742 A 4201 4198
477 France 743 A 4201 4198
478 France 744 A 4201 4196
479 France 745 C T,A 4201 4189 Asn160Lys-p.Asn160Asn
480 France 746 T 4218 4215
481 France 747 G 4218 4215
482 France 748 G 4218 4214
483 France 749 A 4218 4216
484 France 750 A 4218 4216
485 France 751 C T 4218 4215 Asn162Asn
486 France 752 A 4218 4216
487 France 753 C 4218 4216
488 France 754 T 4217 4216
489 France 755 A 4217 4216
490 France 756 A 4217 4215
491 France 757 A 4217 4217
492 France 758 C T 4217 4216 His165Tyr
493 France 759 A 4215 4215
494 France 760 T 4215 4215
495 France 761 A 4214 4213
496 France 762 G 4214 4212
497 France 763 C T 4214 4212 Ser166Ser
498 France 764 A 4211 4207
499 France 765 G 4211 4207
500 France 766 T 4206 4202
501 France 767 G 4206 4203
502 France 768 G 4206 4203
503 France 769 T 4206 4204
504 France 770 G 4206 4204
505 France 771 T 4206 4202
506 France 772 T C 4206 4202 Val169Val
507 France 773 A 4206 4202
508 France 774 C 4205 4203
509 France 775 C 4205 4203
510 France 776 C 4202 4199
511 France 777 G 4202 4199
512 France 778 T C 4201 4197 Arg171Arg
513 France 779 G 4201 4197
514 France 780 A 4201 4199
515 France 781 A 4201 4199
516 France 782 C 4201 4198
517 France 783 T 4200 4198
518 France 784 C 4200 4198
519 France 785 A 4200 4199
520 France 786 T 4200 4198
521 France 787 G 4200 4200
522 France 788 C 4199 4199
523 France 789 G 4199 4198
524 France 790 T 4199 4199
525 France 791 G 4199 4199
526 France 792 A 4199 4198
527 France 793 G 4199 4199
528 France 794 C 4198 4197
529 France 795 T 4198 4198
530 France 796 T 4198 4198
531 France 797 A 4198 4197
532 France 798 A 4198 4198
533 France 799 C 4198 4197
534 France 800 G 4198 4198
535 France 801 G 4198 4198
536 France 802 A 4195 4195
537 France 803 G 4195 4194
538 France 804 G 4194 4194
539 France 805 G 4193 4193