National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   540                                        
?                                            
A   21                                        
C   3                                        
D   27                                        
E   54                                        
F   15                                        
G   66                                        
H   21                                        
I   9                                        
K   27                                        
L   63                                        
M   9                                        
N   18                                        
P   24                                        
Q   21                                        
R   30                                        
S   30                                        
T   21                                        
V   63                                        
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 El_Salvador 266 A 6 6
1 El_Salvador 267 T 6 6
2 El_Salvador 268 G 6 6
3 El_Salvador 269 G 6 6
4 El_Salvador 270 A 6 6
5 El_Salvador 271 G 6 6
6 El_Salvador 272 A 6 6
7 El_Salvador 273 G 6 6
8 El_Salvador 274 C 6 6
9 El_Salvador 275 C 6 6
10 El_Salvador 276 T 6 6
11 El_Salvador 277 T 6 6
12 El_Salvador 278 G 6 6
13 El_Salvador 279 T 6 6
14 El_Salvador 280 C 6 6
15 El_Salvador 281 C 6 6
16 El_Salvador 282 C 6 6
17 El_Salvador 283 T 6 6
18 El_Salvador 284 G 6 6
19 El_Salvador 285 G 6 6
20 El_Salvador 286 T 6 6
21 El_Salvador 287 T 6 6
22 El_Salvador 288 T 6 6
23 El_Salvador 289 C 6 6
24 El_Salvador 290 A 6 6
25 El_Salvador 291 A 6 6
26 El_Salvador 292 C 6 6
27 El_Salvador 293 G 6 6
28 El_Salvador 294 A 6 6
29 El_Salvador 295 G 6 6
30 El_Salvador 296 A 6 6
31 El_Salvador 297 A 6 6
32 El_Salvador 298 A 6 6
33 El_Salvador 299 A 6 6
34 El_Salvador 300 C 6 6
35 El_Salvador 301 A 6 6
36 El_Salvador 302 C 6 6
37 El_Salvador 303 A 6 6
38 El_Salvador 304 C 6 6
39 El_Salvador 305 G 6 6
40 El_Salvador 306 T 6 6
41 El_Salvador 307 C 6 6
42 El_Salvador 308 C 6 6
43 El_Salvador 309 A 6 6
44 El_Salvador 310 A 6 6
45 El_Salvador 311 C 6 6
46 El_Salvador 312 T 6 6
47 El_Salvador 313 C 6 6
48 El_Salvador 314 A 6 6
49 El_Salvador 315 G 6 6
50 El_Salvador 316 T 6 6
51 El_Salvador 317 T 6 6
52 El_Salvador 318 T 6 6
53 El_Salvador 319 G 6 6
54 El_Salvador 320 C 6 6
55 El_Salvador 321 C 6 6
56 El_Salvador 322 T 6 6
57 El_Salvador 323 G 6 6
58 El_Salvador 324 T 6 6
59 El_Salvador 325 T 6 6
60 El_Salvador 326 T 6 6
61 El_Salvador 327 T 6 6
62 El_Salvador 328 A 6 6
63 El_Salvador 329 C 6 6
64 El_Salvador 330 A 6 6
65 El_Salvador 331 G 6 6
66 El_Salvador 332 G 6 6
67 El_Salvador 333 T 6 6
68 El_Salvador 334 T 6 6
69 El_Salvador 335 C 6 6
70 El_Salvador 336 G 6 6
71 El_Salvador 337 C 6 6
72 El_Salvador 338 G 6 6
73 El_Salvador 339 A 6 6
74 El_Salvador 340 C 6 6
75 El_Salvador 341 G 6 6
76 El_Salvador 342 T 6 6
77 El_Salvador 343 G 6 6
78 El_Salvador 344 C 6 6
79 El_Salvador 345 T 6 6
80 El_Salvador 346 C 6 6
81 El_Salvador 347 G 6 6
82 El_Salvador 348 T 6 6
83 El_Salvador 349 A 6 6
84 El_Salvador 350 C 6 6
85 El_Salvador 351 G 6 6
86 El_Salvador 352 T 6 6
87 El_Salvador 353 G 6 6
88 El_Salvador 354 G 6 6
89 El_Salvador 355 C 6 6
90 El_Salvador 356 T 6 6
91 El_Salvador 357 T 6 6
92 El_Salvador 358 T 6 6
93 El_Salvador 359 G 6 6
94 El_Salvador 360 G 6 6
95 El_Salvador 361 A 6 6
96 El_Salvador 362 G 6 6
97 El_Salvador 363 A 6 6
98 El_Salvador 364 C 6 6
99 El_Salvador 365 T 6 6
100 El_Salvador 366 C 6 6
101 El_Salvador 367 C 6 6
102 El_Salvador 368 G 6 6
103 El_Salvador 369 T 6 6
104 El_Salvador 370 G 6 6
105 El_Salvador 371 G 6 6
106 El_Salvador 372 A 6 6
107 El_Salvador 373 G 6 6
108 El_Salvador 374 G 6 6
109 El_Salvador 375 A 6 6
110 El_Salvador 376 G 6 6
111 El_Salvador 377 G 6 6
112 El_Salvador 378 T 6 6
113 El_Salvador 379 C 6 6
114 El_Salvador 380 T 6 6
115 El_Salvador 381 T 6 6
116 El_Salvador 382 A 6 6
117 El_Salvador 383 T 6 6
118 El_Salvador 384 C 6 6
119 El_Salvador 385 A 6 6
120 El_Salvador 386 G 6 6
121 El_Salvador 387 A 6 6
122 El_Salvador 388 G 6 6
123 El_Salvador 389 G 6 6
124 El_Salvador 390 C 6 6
125 El_Salvador 391 A 6 6
126 El_Salvador 392 C 6 6
127 El_Salvador 393 G 6 6
128 El_Salvador 394 T 6 6
129 El_Salvador 395 C 6 6
130 El_Salvador 396 A 6 6
131 El_Salvador 397 A 6 6
132 El_Salvador 398 C 6 6
133 El_Salvador 399 A 6 6
134 El_Salvador 400 T 6 6
135 El_Salvador 401 C 6 6
136 El_Salvador 402 T 6 6
137 El_Salvador 403 T 6 6
138 El_Salvador 404 A 6 6
139 El_Salvador 405 A 6 6
140 El_Salvador 406 A 6 6
141 El_Salvador 407 G 6 6
142 El_Salvador 408 A 6 6
143 El_Salvador 409 T 6 6
144 El_Salvador 410 G 6 6
145 El_Salvador 411 G 6 6
146 El_Salvador 412 C 6 6
147 El_Salvador 413 A 6 6
148 El_Salvador 414 C 6 6
149 El_Salvador 415 T 6 6
150 El_Salvador 416 T 6 6
151 El_Salvador 417 G 6 6
152 El_Salvador 418 T 6 6
153 El_Salvador 419 G 6 6
154 El_Salvador 420 G 6 6
155 El_Salvador 421 C 6 6
156 El_Salvador 422 T 6 6
157 El_Salvador 423 T 6 6
158 El_Salvador 424 A 6 6
159 El_Salvador 425 G 6 6
160 El_Salvador 426 T 6 6
161 El_Salvador 427 A 6 6
162 El_Salvador 428 G 6 6
163 El_Salvador 429 A 6 6
164 El_Salvador 430 A 6 6
165 El_Salvador 431 G 6 6
166 El_Salvador 432 T 6 6
167 El_Salvador 433 T 6 6
168 El_Salvador 434 G 6 6
169 El_Salvador 435 A 6 6
170 El_Salvador 436 A 6 6
171 El_Salvador 437 A 6 6
172 El_Salvador 438 A 6 6
173 El_Salvador 439 A 6 6
174 El_Salvador 440 G 6 6
175 El_Salvador 441 G 6 6
176 El_Salvador 442 C 6 6
177 El_Salvador 443 G 6 6
178 El_Salvador 444 T 6 6
179 El_Salvador 445 T 6 6
180 El_Salvador 446 T 6 6
181 El_Salvador 447 T 6 6
182 El_Salvador 448 G 6 6
183 El_Salvador 449 C 6 6
184 El_Salvador 450 C 6 6
185 El_Salvador 451 T 6 6
186 El_Salvador 452 C 6 6
187 El_Salvador 453 A 6 6
188 El_Salvador 454 A 6 6
189 El_Salvador 455 C 6 6
190 El_Salvador 456 T 6 6
191 El_Salvador 457 T 6 6
192 El_Salvador 458 G 6 6
193 El_Salvador 459 A 6 6
194 El_Salvador 460 A 6 6
195 El_Salvador 461 C 6 6
196 El_Salvador 462 A 6 6
197 El_Salvador 463 G 6 6
198 El_Salvador 464 C 6 6
199 El_Salvador 465 C 6 6
200 El_Salvador 466 C 6 6
201 El_Salvador 467 T 6 6
202 El_Salvador 468 A 6 6
203 El_Salvador 469 T 6 6
204 El_Salvador 470 G 6 6
205 El_Salvador 471 T 6 6
206 El_Salvador 472 G 6 6
207 El_Salvador 473 T 6 6
208 El_Salvador 474 T 6 6
209 El_Salvador 475 C 6 6
210 El_Salvador 476 A 6 6
211 El_Salvador 477 T 6 6
212 El_Salvador 478 C 6 6
213 El_Salvador 479 A 6 6
214 El_Salvador 480 A 6 6
215 El_Salvador 481 A 6 6
216 El_Salvador 482 C 6 6
217 El_Salvador 483 G 6 6
218 El_Salvador 484 T 6 6
219 El_Salvador 485 T 6 6
220 El_Salvador 486 C 6 6
221 El_Salvador 487 G 6 6
222 El_Salvador 488 G 6 6
223 El_Salvador 489 A 6 6
224 El_Salvador 490 T 6 6
225 El_Salvador 491 G 6 6
226 El_Salvador 492 C 6 6
227 El_Salvador 493 T 6 6
228 El_Salvador 494 C 6 6
229 El_Salvador 495 G 6 6
230 El_Salvador 496 A 6 6
231 El_Salvador 497 A 6 6
232 El_Salvador 498 C 6 6
233 El_Salvador 499 T 6 6
234 El_Salvador 500 G 6 6
235 El_Salvador 501 C 6 6
236 El_Salvador 502 A 6 6
237 El_Salvador 503 C 6 6
238 El_Salvador 504 C 6 6
239 El_Salvador 505 T 6 6
240 El_Salvador 506 C 6 6
241 El_Salvador 507 A 6 6
242 El_Salvador 508 T 6 6
243 El_Salvador 509 G 6 6
244 El_Salvador 510 G 6 6
245 El_Salvador 511 T 6 6
246 El_Salvador 512 C 6 6
247 El_Salvador 513 A 6 6
248 El_Salvador 514 T 6 6
249 El_Salvador 515 G 6 6
250 El_Salvador 516 T 6 6
251 El_Salvador 517 T 6 6
252 El_Salvador 518 A 6 6
253 El_Salvador 519 T 6 6
254 El_Salvador 520 G 6 6
255 El_Salvador 521 G 6 6
256 El_Salvador 522 T 6 6
257 El_Salvador 523 T 6 6
258 El_Salvador 524 G 6 6
259 El_Salvador 525 A 6 6
260 El_Salvador 526 G 6 6
261 El_Salvador 527 C 6 6
262 El_Salvador 528 T 6 6
263 El_Salvador 529 G 6 6
264 El_Salvador 530 G 6 6
265 El_Salvador 531 T 6 6
266 El_Salvador 532 A 6 6
267 El_Salvador 533 G 6 6
268 El_Salvador 534 C 6 6
269 El_Salvador 535 A 6 6
270 El_Salvador 536 G 6 6
271 El_Salvador 537 A 6 6
272 El_Salvador 538 A 6 6
273 El_Salvador 539 C 6 6
274 El_Salvador 540 T 6 6
275 El_Salvador 541 C 6 6
276 El_Salvador 542 G 6 6
277 El_Salvador 543 A 6 6
278 El_Salvador 544 A 6 6
279 El_Salvador 545 G 6 6
280 El_Salvador 546 G 6 6
281 El_Salvador 547 C 6 6
282 El_Salvador 548 A 6 6
283 El_Salvador 549 T 6 6
284 El_Salvador 550 T 6 6
285 El_Salvador 551 C 6 6
286 El_Salvador 552 A 6 6
287 El_Salvador 553 G 6 6
288 El_Salvador 554 T 6 6
289 El_Salvador 555 A 6 6
290 El_Salvador 556 C 6 6
291 El_Salvador 557 G 6 6
292 El_Salvador 558 G 6 6
293 El_Salvador 559 T 6 6
294 El_Salvador 560 C 6 6
295 El_Salvador 561 G 6 6
296 El_Salvador 562 T 6 6
297 El_Salvador 563 A 6 6
298 El_Salvador 564 G 6 6
299 El_Salvador 565 T 6 6
300 El_Salvador 566 G 6 6
301 El_Salvador 567 G 6 6
302 El_Salvador 568 T 6 6
303 El_Salvador 569 G 6 6
304 El_Salvador 570 A 6 6
305 El_Salvador 571 G 6 6
306 El_Salvador 572 A 6 6
307 El_Salvador 573 C 6 6
308 El_Salvador 574 A 6 6
309 El_Salvador 575 C 6 6
310 El_Salvador 576 T 6 6
311 El_Salvador 577 T 6 6
312 El_Salvador 578 G 6 6
313 El_Salvador 579 G 6 6
314 El_Salvador 580 T 6 6
315 El_Salvador 581 G 6 6
316 El_Salvador 582 T 6 6
317 El_Salvador 583 C 6 6
318 El_Salvador 584 C 6 6
319 El_Salvador 585 T 6 6
320 El_Salvador 586 T 6 6
321 El_Salvador 587 G 6 6
322 El_Salvador 588 T 6 6
323 El_Salvador 589 C 6 6
324 El_Salvador 590 C 6 6
325 El_Salvador 591 C 6 6
326 El_Salvador 592 T 6 6
327 El_Salvador 593 C 6 6
328 El_Salvador 594 A 6 6
329 El_Salvador 595 T 6 6
330 El_Salvador 596 G 6 6
331 El_Salvador 597 T 6 6
332 El_Salvador 598 G 6 6
333 El_Salvador 599 G 6 6
334 El_Salvador 600 G 6 6
335 El_Salvador 601 C 6 6
336 El_Salvador 602 G 6 6
337 El_Salvador 603 A 6 6
338 El_Salvador 604 A 6 6
339 El_Salvador 605 A 6 6
340 El_Salvador 606 T 6 6
341 El_Salvador 607 A 6 6
342 El_Salvador 608 C 6 6
343 El_Salvador 609 C 6 6
344 El_Salvador 610 A 6 6
345 El_Salvador 611 G 6 6
346 El_Salvador 612 T 6 6
347 El_Salvador 613 G 6 6
348 El_Salvador 614 G 6 6
349 El_Salvador 615 C 6 6
350 El_Salvador 616 T 6 6
351 El_Salvador 617 T 6 6
352 El_Salvador 618 A 6 6
353 El_Salvador 619 C 6 6
354 El_Salvador 620 C 6 6
355 El_Salvador 621 G 6 6
356 El_Salvador 622 C 6 6
357 El_Salvador 623 A 6 6
358 El_Salvador 624 A 6 6
359 El_Salvador 625 G 6 6
360 El_Salvador 626 G 6 6
361 El_Salvador 627 T 6 6
362 El_Salvador 628 T 6 6
363 El_Salvador 629 C 6 6
364 El_Salvador 630 T 6 6
365 El_Salvador 631 T 6 6
366 El_Salvador 632 C 6 6
367 El_Salvador 633 T 6 6
368 El_Salvador 634 T 6 6
369 El_Salvador 635 C 6 6
370 El_Salvador 636 G 6 6
371 El_Salvador 637 T 6 6
372 El_Salvador 638 A 6 6
373 El_Salvador 639 A 6 6
374 El_Salvador 640 G 6 6
375 El_Salvador 641 A 6 6
376 El_Salvador 642 A 6 6
377 El_Salvador 643 C 6 6
378 El_Salvador 644 G 6 6
379 El_Salvador 645 G 6 6
380 El_Salvador 646 T 6 6
381 El_Salvador 647 A 6 6
382 El_Salvador 648 A 6 6
383 El_Salvador 649 T 6 6
384 El_Salvador 650 A 6 6
385 El_Salvador 651 A 6 6
386 El_Salvador 652 A 6 6
387 El_Salvador 653 G 6 6
388 El_Salvador 654 G 6 6
389 El_Salvador 655 A 6 6
390 El_Salvador 656 G 6 6
391 El_Salvador 657 C 6 6
392 El_Salvador 658 T 6 6
393 El_Salvador 659 G 6 6
394 El_Salvador 660 G 6 6
395 El_Salvador 661 T 6 6
396 El_Salvador 662 G 6 6
397 El_Salvador 663 G 6 6
398 El_Salvador 664 C 6 6
399 El_Salvador 665 C 6 6
400 El_Salvador 666 A 6 6
401 El_Salvador 667 T 6 6
402 El_Salvador 668 A 6 6
403 El_Salvador 669 G 6 6
404 El_Salvador 670 T 6 6
405 El_Salvador 671 T 6 6
406 El_Salvador 672 A 6 6
407 El_Salvador 673 C 6 6
408 El_Salvador 674 G 6 6
409 El_Salvador 675 G 6 6
410 El_Salvador 676 C 6 6
411 El_Salvador 677 G 6 6
412 El_Salvador 678 C 6 6
413 El_Salvador 679 C 6 6
414 El_Salvador 680 G 6 6
415 El_Salvador 681 A 6 6
416 El_Salvador 682 T 6 6
417 El_Salvador 683 C 6 6
418 El_Salvador 684 T 6 6
419 El_Salvador 685 A 6 6
420 El_Salvador 686 A 6 6
421 El_Salvador 687 A 6 6
422 El_Salvador 688 G 6 6
423 El_Salvador 689 T 6 6
424 El_Salvador 690 C 6 6
425 El_Salvador 691 A 6 6
426 El_Salvador 692 T 6 6
427 El_Salvador 693 T 6 6
428 El_Salvador 694 T 6 6
429 El_Salvador 695 G 6 6
430 El_Salvador 696 A 6 6
431 El_Salvador 697 C 6 6
432 El_Salvador 698 T 6 6
433 El_Salvador 699 T 6 6
434 El_Salvador 700 A 6 6
435 El_Salvador 701 G 6 6
436 El_Salvador 702 G 6 6
437 El_Salvador 703 C 6 6
438 El_Salvador 704 G 6 6
439 El_Salvador 705 A 6 6
440 El_Salvador 706 C 6 6
441 El_Salvador 707 G 6 6
442 El_Salvador 708 A 6 6
443 El_Salvador 709 G 6 6
444 El_Salvador 710 C 6 6
445 El_Salvador 711 T 6 6
446 El_Salvador 712 T 6 6
447 El_Salvador 713 G 6 6
448 El_Salvador 714 G 6 6
449 El_Salvador 715 C 6 6
450 El_Salvador 716 A 6 6
451 El_Salvador 717 C 6 6
452 El_Salvador 718 T 6 6
453 El_Salvador 719 G 6 6
454 El_Salvador 720 A 6 6
455 El_Salvador 721 T 6 6
456 El_Salvador 722 C 6 6
457 El_Salvador 723 C 6 6
458 El_Salvador 724 T 6 6
459 El_Salvador 725 T 6 6
460 El_Salvador 726 A 6 6
461 El_Salvador 727 T 6 6
462 El_Salvador 728 G 6 6
463 El_Salvador 729 A 6 6
464 El_Salvador 730 A 6 6
465 El_Salvador 731 G 6 6
466 El_Salvador 732 A 6 6
467 El_Salvador 733 T 6 6
468 El_Salvador 734 T 6 6
469 El_Salvador 735 T 6 6
470 El_Salvador 736 T 6 6
471 El_Salvador 737 C 6 6
472 El_Salvador 738 A 6 6
473 El_Salvador 739 A 6 6
474 El_Salvador 740 G 6 6
475 El_Salvador 741 A 6 6
476 El_Salvador 742 A 6 6
477 El_Salvador 743 A 6 6
478 El_Salvador 744 A 6 6
479 El_Salvador 745 C 6 6
480 El_Salvador 746 T 6 6
481 El_Salvador 747 G 6 6
482 El_Salvador 748 G 6 6
483 El_Salvador 749 A 6 6
484 El_Salvador 750 A 6 6
485 El_Salvador 751 C 6 6
486 El_Salvador 752 A 6 6
487 El_Salvador 753 C 6 6
488 El_Salvador 754 T 6 6
489 El_Salvador 755 A 6 6
490 El_Salvador 756 A 6 6
491 El_Salvador 757 A 6 6
492 El_Salvador 758 C 6 6
493 El_Salvador 759 A 6 6
494 El_Salvador 760 T 6 6
495 El_Salvador 761 A 6 6
496 El_Salvador 762 G 6 6
497 El_Salvador 763 C 6 6
498 El_Salvador 764 A 6 6
499 El_Salvador 765 G 6 6
500 El_Salvador 766 T 6 6
501 El_Salvador 767 G 6 6
502 El_Salvador 768 G 6 6
503 El_Salvador 769 T 6 6
504 El_Salvador 770 G 6 6
505 El_Salvador 771 T 6 6
506 El_Salvador 772 T 6 6
507 El_Salvador 773 A 6 6
508 El_Salvador 774 C 6 6
509 El_Salvador 775 C 6 6
510 El_Salvador 776 C 6 6
511 El_Salvador 777 G 6 6
512 El_Salvador 778 T 6 6
513 El_Salvador 779 G 6 6
514 El_Salvador 780 A 6 6
515 El_Salvador 781 A 6 6
516 El_Salvador 782 C 6 6
517 El_Salvador 783 T 6 6
518 El_Salvador 784 C 6 6
519 El_Salvador 785 A 6 6
520 El_Salvador 786 T 6 6
521 El_Salvador 787 G 6 6
522 El_Salvador 788 C 6 6
523 El_Salvador 789 G 6 6
524 El_Salvador 790 T 6 6
525 El_Salvador 791 G 6 6
526 El_Salvador 792 A 6 6
527 El_Salvador 793 G 6 6
528 El_Salvador 794 C 6 6
529 El_Salvador 795 T 6 6
530 El_Salvador 796 T 6 6
531 El_Salvador 797 A 6 6
532 El_Salvador 798 A 6 6
533 El_Salvador 799 C 6 6
534 El_Salvador 800 G 6 6
535 El_Salvador 801 G 6 6
536 El_Salvador 802 A 6 6
537 El_Salvador 803 G 6 6
538 El_Salvador 804 G 6 6
539 El_Salvador 805 G 6 6