National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*                                              
-     539                                        
?                                              
A     21 4                               2 2    
C     3                                        
D     27     4 2                                
E     54     5 4   3     1         1       1    
F     15         2         1               1   2
G 1   66       1   9                       1    
H     21             2                         1
I     9                                 1 2    
K     27               1 4     2   1            
L     63         4   1 2   14     1              
M     9                                        
N     18                       2                
P     24                         6              
Q     21       1                                
R     30   3                         1          
S     29           1             1     7 1      
T     21                                 2      
V     63 1       1     3   1               17    
W     3                                        
Y     15         2             1               3

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 China 266 A 918 918
1 China 267 T 918 918
2 China 268 G 918 918
3 China 269 G 918 918
4 China 270 A G 918 917 Glu2Gly
5 China 271 G 918 918
6 China 272 A 918 918
7 China 273 G 918 918
8 China 274 C T 918 917 Ser3Ser
9 China 275 C 918 918
10 China 276 T 918 918
11 China 277 T 918 918
12 China 278 G 918 918
13 China 279 T 918 918
14 China 280 C 918 918
15 China 281 C 919 919
16 China 282 C 919 919
17 China 283 T 919 919
18 China 284 G 919 919
19 China 285 G T 919 918 Gly7Val
20 China 286 T 919 919
21 China 287 T 919 919
22 China 288 T 919 919
23 China 289 C T 919 917 Phe8Phe
24 China 290 A 919 919
25 China 291 A 919 919
26 China 292 C 919 919
27 China 293 G 919 919
28 China 294 A 919 919
29 China 295 G 919 919
30 China 296 A 919 919
31 China 297 A 919 919
32 China 298 A 920 920
33 China 299 A 921 921
34 China 300 C 921 921
35 China 301 A 921 921
36 China 302 C 921 921
37 China 303 A 921 921
38 China 304 C 921 921
39 China 305 G 921 921
40 China 306 T 921 918
41 China 307 C 921 921
42 China 308 C 921 921
43 China 309 A 921 921
44 China 310 A 921 921
45 China 311 C 921 921
46 China 312 T 921 921
47 China 313 C T 921 920 Leu16Leu
48 China 314 A 921 920
49 China 315 G 921 920
50 China 316 T 921 920
51 China 317 T 921 920
52 China 318 T 921 920
53 China 319 G 921 919
54 China 320 C 922 921
55 China 321 C 923 922
56 China 322 T 923 922
57 China 323 G 923 923
58 China 324 T 923 923
59 China 325 T C 923 922 Val20Val
60 China 326 T C 923 917 Leu21Leu
61 China 327 T 923 923
62 China 328 A T 923 917 Leu21Phe
63 China 329 C 923 922
64 China 330 A 923 923
65 China 331 G 923 923
66 China 332 G 923 923
67 China 333 T 923 923
68 China 334 T 923 923
69 China 335 C 923 923
70 China 336 G 923 923
71 China 337 C 923 923
72 China 338 G 923 923
73 China 339 A 923 923
74 China 340 C G 923 922 Asp25Glu
75 China 341 G C 923 922 Val26Leu
76 China 342 T 923 923
77 China 343 G 930 930
78 China 344 C T 930 929 Leu27Phe
79 China 345 T 930 930
80 China 346 C A 930 924 Leu27Leu
81 China 347 G 930 929
82 China 348 T 930 930
83 China 349 A 930 930
84 China 350 C 930 930
85 China 351 G 930 929
86 China 352 T 930 930
87 China 353 G 930 930
88 China 354 G 930 930
89 China 355 C 930 929
90 China 356 T G 930 928 Phe31Val
91 China 357 T 930 929
92 China 358 T A 930 928 Phe31Leu
93 China 359 G 930 929
94 China 360 G 930 929
95 China 361 A 930 929
96 China 362 G 930 929
97 China 363 A 930 929
98 China 364 C 930 929
99 China 365 T 930 929
100 China 366 C 930 929
101 China 367 C 930 929
102 China 368 G 930 929
103 China 369 T 930 929
104 China 370 G 930 928
105 China 371 G 930 928
106 China 372 A 930 929
107 China 373 G 930 929
108 China 374 G 930 929
109 China 375 A 930 929
110 China 376 G 930 929
111 China 377 G 930 929
112 China 378 T C 929 915 Val38Ala
113 China 379 C T,A 929 914 Val38Val-p.Val38Val
114 China 380 T A,C 929 916 Leu39Ile-p.Leu39Leu
115 China 381 T 929 927
116 China 382 A C 929 921 Leu39Phe
117 China 383 T C 929 925 Ser40Pro
118 China 384 C 929 927
119 China 385 A 929 927
120 China 386 G 929 927
121 China 387 A G 929 926 Glu41Gly
122 China 388 G 929 928
123 China 389 G 929 927
124 China 390 C 929 926
125 China 391 A 929 926
126 China 392 C 929 926
127 China 393 G 929 926
128 China 394 T 929 927
129 China 395 C 929 928
130 China 396 A 929 928
131 China 397 A 929 928
132 China 398 C 929 927
133 China 399 A 929 928
134 China 400 T 929 928
135 China 401 C 929 928
136 China 402 T 929 928
137 China 403 T C 929 922 Leu46Leu
138 China 404 A C 929 923 Lys47Gln
139 China 405 A T 929 923 Lys47Ile
140 China 406 A G,T 929 917 Lys47Asn-p.Lys47Lys
141 China 407 G 930 928
142 China 408 A 930 928
143 China 409 T C 930 923 Asp48Asp
144 China 410 G 930 929
145 China 411 G 930 929
146 China 412 C 930 929
147 China 413 A 930 929
148 China 414 C 930 929
149 China 415 T 930 929
150 China 416 T 930 929
151 China 417 G 930 929
152 China 418 T 930 929
153 China 419 G 930 929
154 China 420 G 930 929
155 China 421 C T 930 928 Gly52Gly
156 China 422 T A 930 924 Leu53Ile
157 China 423 T 930 929
158 China 424 A 930 929
159 China 425 G A 930 925 Val54Ile
160 China 426 T 930 930
161 China 427 A C 930 925 Val54Val
162 China 428 G 930 930
163 China 429 A 930 930
164 China 430 A G,T 930 919 Glu55Asp-p.Glu55Glu
165 China 431 G 930 930
166 China 432 T 930 930
167 China 433 T C 930 929 Val56Val
168 China 434 G 930 930
169 China 435 A 930 924
170 China 436 A 930 930
171 China 437 A 930 930
172 China 438 A 930 930
173 China 439 A G 930 925 Lys58Lys
174 China 440 G 930 930
175 China 441 G 930 930
176 China 442 C A,T 930 924 Gly59Gly-p.Gly59Gly
177 China 443 G 930 930
178 China 444 T 930 930
179 China 445 T C,A 929 917 Val60Val-p.Val60Val
180 China 446 T C 866 861 Leu61Leu
181 China 447 T 866 866
182 China 448 G C 866 861 Leu61Phe
183 China 449 C 866 866
184 China 450 C 866 866
185 China 451 T C 866 861 Pro62Pro
186 China 452 C 866 866
187 China 453 A 866 865
188 China 454 A 866 865
189 China 455 C 866 865
190 China 456 T 866 865
191 China 457 T C 866 860 Leu64Leu
192 China 458 G 866 865
193 China 459 A 866 865
194 China 460 A 866 865
195 China 461 C 867 866
196 China 462 A 867 866
197 China 463 G 867 866
198 China 464 C 867 865
199 China 465 C 867 866
200 China 466 C 867 866
201 China 467 T 867 866
202 China 468 A 867 866
203 China 469 T 867 866
204 China 470 G 867 866
205 China 471 T 867 866
206 China 472 G 867 866
207 China 473 T 867 866
208 China 474 T 867 866
209 China 475 C T 867 861 Phe70Phe
210 China 476 A G 867 861 Ile71Val
211 China 477 T 867 866
212 China 478 C 867 866
213 China 479 A 867 866
214 China 480 A 867 866
215 China 481 A 867 866
216 China 482 C T 867 865 Arg73Cys
217 China 483 G 867 866
218 China 484 T 867 866
219 China 485 T 867 866
220 China 486 C 867 866
221 China 487 G T 867 853 Ser74Ser
222 China 488 G 867 866
223 China 489 A 867 866
224 China 490 T A 867 865 Asp75Glu
225 China 491 G 867 865
226 China 492 C 867 866
227 China 493 T C 867 855 Ala76Ala
228 China 494 C 867 867
229 China 495 G 867 867
230 China 496 A 867 867
231 China 497 A 867 867
232 China 498 C 867 867
233 China 499 T 867 867
234 China 500 G A 867 866 Ala79Thr
235 China 501 C 867 867
236 China 502 A T 867 862 Ala79Ala
237 China 503 C 867 867
238 China 504 C 867 867
239 China 505 T G 868 862 Pro80Pro
240 China 506 C 868 868
241 China 507 A 868 868
242 China 508 T C 868 863 His81His
243 China 509 G 868 868
244 China 510 G 868 868
245 China 511 T C 868 854 Gly82Gly
246 China 512 C 868 867
247 China 513 A 868 867
248 China 514 T 868 867
249 China 515 G 868 867
250 China 516 T 868 867
251 China 517 T A,C 868 856 Val84Val-p.Val84Val
252 China 518 A 868 867
253 China 519 T 868 868
254 China 520 G 868 868
255 China 521 G 868 868
256 China 522 T 868 868
257 China 523 T 868 868
258 China 524 G 868 868
259 China 525 A 868 868
260 China 526 G A 868 856 Glu87Glu
261 China 527 C T 868 856 Leu88Leu
262 China 528 T 868 867
263 China 529 G 868 867
264 China 530 G 868 867
265 China 531 T 868 867
266 China 532 A T,G 868 856 Val89Val-p.Val89Val
267 China 533 G 868 867
268 China 534 C 868 868
269 China 535 A 868 868
270 China 536 G 868 867
271 China 537 A 868 867
272 China 538 A 868 867
273 China 539 C 868 867
274 China 540 T 868 867
275 China 541 C T 867 865 Leu92Leu
276 China 542 G A 867 859 Glu93Lys
277 China 543 A 868 867
278 China 544 A T 868 854 Glu93Asp
279 China 545 G 870 869
280 China 546 G 870 870
281 China 547 C T 870 859 Gly94Gly
282 China 548 A G 870 859 Ile95Val
283 China 549 T 870 870
284 China 550 T 870 870
285 China 551 C 870 870
286 China 552 A 870 870
287 China 553 G 870 870
288 China 554 T 870 870
289 China 555 A 870 870
290 China 556 C T 870 869 Tyr97Tyr
291 China 557 G 870 870
292 China 558 G 870 870
293 China 559 T 870 869
294 China 560 C 870 870
295 China 561 G 870 870
296 China 562 T 870 870
297 China 563 A 871 871
298 China 564 G 871 871
299 China 565 T C 934 928 Ser100Ser
300 China 566 G 933 933
301 China 567 G 933 933
302 China 568 T 933 932
303 China 569 G 933 932
304 China 570 A 933 932
305 China 571 G 933 932
306 China 572 A 933 932
307 China 573 C 933 933
308 China 574 A T 933 928 Thr103Thr
309 China 575 C 934 934
310 China 576 T 934 933
311 China 577 T C 934 933 Leu104Leu
312 China 578 G 934 934
313 China 579 G 934 934
314 China 580 T 934 934
315 China 581 G A 934 933 Val106Ile
316 China 582 T 934 934
317 China 583 C T 934 920 Val106Val
318 China 584 C 934 934
319 China 585 T 934 934
320 China 586 T C 934 927 Leu107Leu
321 China 587 G 934 934
322 China 588 T 934 934
323 China 589 C A 934 922 Val108Val
324 China 590 C 934 934
325 China 591 C 934 934
326 China 592 T C,A 934 922 Pro109Pro-p.Pro109Pro
327 China 593 C T 934 933 His110Tyr
328 China 594 A 934 934
329 China 595 T 934 934
330 China 596 G 935 935
331 China 597 T 935 935
332 China 598 G T 935 929 Val111Val
333 China 599 G 935 934
334 China 600 G 935 935
335 China 601 C T 935 923 Gly112Gly
336 China 602 G 935 935
337 China 603 A 935 935
338 China 604 A 935 935
339 China 605 A 935 935
340 China 606 T C 935 921 Ile114Thr
341 China 607 A 935 935
342 China 608 C 935 935
343 China 609 C 935 935
344 China 610 A T 935 922 Pro115Pro
345 China 611 G 935 935
346 China 612 T 935 935
347 China 613 G T 935 922 Val116Val
348 China 614 G 935 935
349 China 615 C T 935 934 Ala117Val
350 China 616 T 935 935
351 China 617 T 935 935
352 China 618 A 935 935
353 China 619 C T 935 930 Tyr118Tyr
354 China 620 C T 935 934 Arg119Cys
355 China 621 G 935 935
356 China 622 C 935 935
357 China 623 A 935 935
358 China 624 A 935 935
359 China 625 G A,T 935 921 Lys120Asn-p.Lys120Lys
360 China 626 G A,T 936 929 Val121Ile-p.Val121Phe
361 China 627 T 936 936
362 China 628 T 936 936
363 China 629 C 936 936
364 China 630 T 936 935
365 China 631 T 936 935
366 China 632 C 936 935
367 China 633 T 936 935
368 China 634 T C 936 930 Leu123Leu
369 China 635 C T 936 934 Arg124Cys
370 China 636 G 936 935
371 China 637 T C 936 928 Arg124Arg
372 China 638 A 936 935
373 China 639 A 936 934
374 China 640 G 936 934
375 China 641 A 936 935
376 China 642 A 936 935
377 China 643 C T 936 928 Asn126Asn
378 China 644 G 936 935
379 China 645 G 936 935
380 China 646 T 936 935
381 China 647 A 936 935
382 China 648 A 936 936
383 China 649 T 936 936
384 China 650 A 936 936
385 China 651 A 936 936
386 China 652 A G 936 929 Lys129Lys
387 China 653 G 936 936
388 China 654 G A 936 935 Gly130Glu
389 China 655 A 936 936
390 China 656 G 936 936
391 China 657 C 936 936
392 China 658 T C 936 928 Ala131Ala
393 China 659 G 936 936
394 China 660 G 936 936
395 China 661 T 936 936
396 China 662 G 936 936
397 China 663 G 936 936
398 China 664 C T 936 924 Gly133Gly
399 China 665 C 944 944
400 China 666 A 944 944
401 China 667 T C 944 936 His134His
402 China 668 A 944 944
403 China 669 G 944 944
404 China 670 T C 944 936 Ser135Ser
405 China 671 T 944 944
406 China 672 A T 944 938 Tyr136Phe
407 China 673 C T 944 936 Tyr136Tyr
408 China 674 G 944 944
409 China 675 G 944 944
410 China 676 C 944 944
411 China 677 G A 944 937 Ala138Thr
412 China 678 C T 944 937 Ala138Val
413 China 679 C T 944 942 Ala138Ala
414 China 680 G 944 944
415 China 681 A 944 944
416 China 682 T 944 944
417 China 683 C T 944 941 Leu140Leu
418 China 684 T 944 944
419 China 685 A 944 944
420 China 686 A 938 937
421 China 687 A 938 937
422 China 688 G 938 936
423 China 689 T 938 937
424 China 690 C 938 937
425 China 691 A C,T,G 938 923 Ser142Ser-p.Ser142Ser
426 China 692 T 938 937
427 China 693 T A 938 923 Phe143Tyr
428 China 694 T 938 937
429 China 695 G 938 938
430 China 696 A 938 938
431 China 697 C 938 938
432 China 698 T 938 938
433 China 699 T 938 938
434 China 700 A 938 938
435 China 701 G 938 938
436 China 702 G 938 938
437 China 703 C T 938 924 Gly146Gly
438 China 704 G 938 938
439 China 705 A 937 937
440 China 706 C T 937 936 Asp147Asp
441 China 707 G 937 937
442 China 708 A 937 937
443 China 709 G A 937 936 Glu148Glu
444 China 710 C 937 937
445 China 711 T C,A 937 935 Leu149Pro-p.Leu149His
446 China 712 T G 937 930 Leu149Leu
447 China 713 G 937 937
448 China 714 G 937 937
449 China 715 C 937 937
450 China 716 A 937 937
451 China 717 C 937 937
452 China 718 T 937 936
453 China 719 G 937 937
454 China 720 A 937 937
455 China 721 T C 937 936 Asp152Asp
456 China 722 C 937 937
457 China 723 C 937 937
458 China 724 T C 937 930 Pro153Pro
459 China 725 T A 937 930 Tyr154Asn
460 China 726 A T 937 930 Tyr154Phe
461 China 727 T 937 937
462 China 728 G 937 937
463 China 729 A 937 937
464 China 730 A T 937 932 Glu155Asp
465 China 731 G 937 936
466 China 732 A 937 937
467 China 733 T C 937 931 Asp156Asp
468 China 734 T 937 937
469 China 735 T A 937 929 Phe157Tyr
470 China 736 T 937 937
471 China 737 C G 937 936 Gln158Glu
472 China 738 A 937 937
473 China 739 A 937 937
474 China 740 G C 937 936 Glu159Gln
475 China 741 A T 937 931 Glu159Val
476 China 742 A C 937 931 Glu159Asp
477 China 743 A 936 936
478 China 744 A 936 936
479 China 745 C 936 936
480 China 746 T 941 940
481 China 747 G 941 940
482 China 748 G 941 940
483 China 749 A 941 940
484 China 750 A 941 940
485 China 751 C 941 940
486 China 752 A 941 940
487 China 753 C 941 940
488 China 754 T 941 940
489 China 755 A 941 940
490 China 756 A 941 940
491 China 757 A 941 940
492 China 758 C 941 940
493 China 759 A 941 941
494 China 760 T 941 941
495 China 761 A G 941 927 Ser166Gly
496 China 762 G 941 941
497 China 763 C 941 941
498 China 764 A 941 941
499 China 765 G C 941 940 Ser167Thr
500 China 766 T 941 941
501 China 767 G 941 941
502 China 768 G 941 941
503 China 769 T 941 941
504 China 770 G 941 941
505 China 771 T 940 940
506 China 772 T A,C 940 926 Val169Val-p.Val169Val
507 China 773 A 940 940
508 China 774 C 940 940
509 China 775 C T 940 926 Thr170Thr
510 China 776 C 940 940
511 China 777 G 940 938
512 China 778 T 940 940
513 China 779 G 940 940
514 China 780 A 940 940
515 China 781 A G,T 940 926 Glu172Asp-p.Glu172Glu
516 China 782 C 940 940
517 China 783 T 940 940
518 China 784 C 940 940
519 China 785 A 940 940
520 China 786 T 940 940
521 China 787 G 940 940
522 China 788 C 940 940
523 China 789 G 940 940
524 China 790 T 940 940
525 China 791 G 940 940
526 China 792 A G 940 939 Glu176Gly
527 China 793 G 940 940
528 China 794 C 940 940
529 China 795 T 940 940
530 China 796 T 940 940
531 China 797 A 940 940
532 China 798 A 940 940
533 China 799 C T 940 925 Asn178Asn
534 China 800 G T 940 939 Gly179*
535 China 801 G 940 940
536 China 802 A G 940 927 Gly179Gly
537 China 803 G 940 940
538 China 804 G 940 940
539 China 805 G 925 925