National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   540                                        
?                                            
A   21                                        
C   3                                        
D   27                                        
E   54     1 1   1                            
F   15         2         1                    
G   66           1                   2        
H   21                                       1
I   9               1                        
K   27                                        
L   63         2         4     1              
M   9                                        
N   18                                        
P   24                                        
Q   21                                        
R   30             2               1          
S   30                                        
T   21                                        
V   63                                   3    
W   3                                        
Y   15             1                         1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Chile 266 A 963 963
1 Chile 267 T 963 963
2 Chile 268 G 963 963
3 Chile 269 G 963 963
4 Chile 270 A 963 963
5 Chile 271 G 963 963
6 Chile 272 A 963 963
7 Chile 273 G 963 963
8 Chile 274 C 963 963
9 Chile 275 C 963 963
10 Chile 276 T C 963 962 Leu4Pro
11 Chile 277 T 963 963
12 Chile 278 G 963 963
13 Chile 279 T 963 963
14 Chile 280 C 963 963
15 Chile 281 C 963 963
16 Chile 282 C 963 963
17 Chile 283 T 963 963
18 Chile 284 G 963 963
19 Chile 285 G 963 963
20 Chile 286 T 963 963
21 Chile 287 T C 963 962 Phe8Leu
22 Chile 288 T 963 963
23 Chile 289 C 963 963
24 Chile 290 A 963 963
25 Chile 291 A 963 963
26 Chile 292 C 963 963
27 Chile 293 G 963 963
28 Chile 294 A 963 963
29 Chile 295 G 963 963
30 Chile 296 A 963 963
31 Chile 297 A 963 963
32 Chile 298 A 963 963
33 Chile 299 A 963 963
34 Chile 300 C 963 963
35 Chile 301 A 963 963
36 Chile 302 C 963 963
37 Chile 303 A 963 963
38 Chile 304 C 963 963
39 Chile 305 G 963 963
40 Chile 306 T 963 963
41 Chile 307 C 963 963
42 Chile 308 C 963 963
43 Chile 309 A 963 963
44 Chile 310 A 963 963
45 Chile 311 C 963 963
46 Chile 312 T 963 963
47 Chile 313 C T 963 960 Leu16Leu
48 Chile 314 A 963 963
49 Chile 315 G 963 963
50 Chile 316 T 963 963
51 Chile 317 T 963 963
52 Chile 318 T 963 963
53 Chile 319 G 963 963
54 Chile 320 C 963 963
55 Chile 321 C 963 963
56 Chile 322 T 963 963
57 Chile 323 G 963 963
58 Chile 324 T 963 963
59 Chile 325 T 963 963
60 Chile 326 T 963 963
61 Chile 327 T 963 963
62 Chile 328 A 963 963
63 Chile 329 C 963 963
64 Chile 330 A 963 963
65 Chile 331 G 963 963
66 Chile 332 G 963 963
67 Chile 333 T 963 963
68 Chile 334 T 963 963
69 Chile 335 C 963 963
70 Chile 336 G 963 963
71 Chile 337 C T 963 961 Arg24Arg
72 Chile 338 G 963 963
73 Chile 339 A 963 963
74 Chile 340 C 963 963
75 Chile 341 G 963 963
76 Chile 342 T 963 963
77 Chile 343 G 963 963
78 Chile 344 C 963 963
79 Chile 345 T 963 963
80 Chile 346 C 963 963
81 Chile 347 G 963 963
82 Chile 348 T 963 963
83 Chile 349 A 963 963
84 Chile 350 C 963 963
85 Chile 351 G 963 963
86 Chile 352 T 963 963
87 Chile 353 G 963 963
88 Chile 354 G 963 963
89 Chile 355 C 963 963
90 Chile 356 T 963 963
91 Chile 357 T 963 963
92 Chile 358 T C 963 962 Phe31Phe
93 Chile 359 G 963 963
94 Chile 360 G 963 963
95 Chile 361 A 963 963
96 Chile 362 G 963 963
97 Chile 363 A 963 963
98 Chile 364 C 963 963
99 Chile 365 T 963 963
100 Chile 366 C 963 963
101 Chile 367 C 963 963
102 Chile 368 G 963 963
103 Chile 369 T 963 963
104 Chile 370 G 963 963
105 Chile 371 G 963 963
106 Chile 372 A 963 963
107 Chile 373 G 963 963
108 Chile 374 G 963 963
109 Chile 375 A 963 963
110 Chile 376 G 963 963
111 Chile 377 G 963 963
112 Chile 378 T 963 963
113 Chile 379 C 963 963
114 Chile 380 T 963 963
115 Chile 381 T 963 963
116 Chile 382 A 963 963
117 Chile 383 T 963 963
118 Chile 384 C 963 963
119 Chile 385 A 963 963
120 Chile 386 G 963 962
121 Chile 387 A 963 962
122 Chile 388 G 963 962
123 Chile 389 G 963 962
124 Chile 390 C 963 962
125 Chile 391 A 963 962
126 Chile 392 C 963 962
127 Chile 393 G A 963 961 Arg43His
128 Chile 394 T 963 962
129 Chile 395 C 963 962
130 Chile 396 A 963 962
131 Chile 397 A 963 962
132 Chile 398 C 963 962
133 Chile 399 A 963 962
134 Chile 400 T 963 962
135 Chile 401 C 963 962
136 Chile 402 T 963 962
137 Chile 403 T 963 962
138 Chile 404 A 963 962
139 Chile 405 A 963 962
140 Chile 406 A 963 962
141 Chile 407 G 963 962
142 Chile 408 A 963 962
143 Chile 409 T 963 962
144 Chile 410 G 963 962
145 Chile 411 G 963 962
146 Chile 412 C 963 963
147 Chile 413 A 963 963
148 Chile 414 C 963 963
149 Chile 415 T 963 963
150 Chile 416 T 963 963
151 Chile 417 G 963 963
152 Chile 418 T 963 963
153 Chile 419 G 963 963
154 Chile 420 G 963 963
155 Chile 421 C 963 963
156 Chile 422 T 963 963
157 Chile 423 T 963 963
158 Chile 424 A 963 963
159 Chile 425 G 963 963
160 Chile 426 T 963 963
161 Chile 427 A 963 963
162 Chile 428 G 963 963
163 Chile 429 A 963 963
164 Chile 430 A 963 963
165 Chile 431 G 963 963
166 Chile 432 T 963 963
167 Chile 433 T 963 963
168 Chile 434 G 963 963
169 Chile 435 A 963 963
170 Chile 436 A 963 963
171 Chile 437 A 963 963
172 Chile 438 A 963 963
173 Chile 439 A 963 963
174 Chile 440 G 963 963
175 Chile 441 G 963 963
176 Chile 442 C 963 963
177 Chile 443 G 963 963
178 Chile 444 T 963 963
179 Chile 445 T C 963 962 Val60Val
180 Chile 446 T 963 963
181 Chile 447 T 963 963
182 Chile 448 G 963 963
183 Chile 449 C 963 963
184 Chile 450 C 963 963
185 Chile 451 T 963 963
186 Chile 452 C 963 963
187 Chile 453 A 963 963
188 Chile 454 A 963 963
189 Chile 455 C 963 963
190 Chile 456 T 963 963
191 Chile 457 T 963 963
192 Chile 458 G 963 963
193 Chile 459 A 963 963
194 Chile 460 A 963 963
195 Chile 461 C 963 963
196 Chile 462 A 963 963
197 Chile 463 G 963 963
198 Chile 464 C 963 963
199 Chile 465 C 963 963
200 Chile 466 C 963 963
201 Chile 467 T 963 963
202 Chile 468 A 963 963
203 Chile 469 T 963 963
204 Chile 470 G 963 963
205 Chile 471 T 963 963
206 Chile 472 G 963 963
207 Chile 473 T 963 963
208 Chile 474 T 963 963
209 Chile 475 C T 963 962 Phe70Phe
210 Chile 476 A 963 963
211 Chile 477 T 963 963
212 Chile 478 C T 963 962 Ile71Ile
213 Chile 479 A 963 963
214 Chile 480 A 963 963
215 Chile 481 A 963 963
216 Chile 482 C 963 963
217 Chile 483 G 963 963
218 Chile 484 T 963 963
219 Chile 485 T 963 963
220 Chile 486 C 963 963
221 Chile 487 G 963 962
222 Chile 488 G 963 963
223 Chile 489 A 963 963
224 Chile 490 T 963 963
225 Chile 491 G 963 963
226 Chile 492 C 963 963
227 Chile 493 T 963 963
228 Chile 494 C 963 962
229 Chile 495 G 963 963
230 Chile 496 A 963 963
231 Chile 497 A 963 963
232 Chile 498 C 963 963
233 Chile 499 T 963 963
234 Chile 500 G 963 963
235 Chile 501 C 963 963
236 Chile 502 A 963 963
237 Chile 503 C 963 963
238 Chile 504 C 963 963
239 Chile 505 T 953 953
240 Chile 506 C 953 953
241 Chile 507 A 953 953
242 Chile 508 T 953 953
243 Chile 509 G 953 953
244 Chile 510 G 953 953
245 Chile 511 T C 953 951 Gly82Gly
246 Chile 512 C 953 953
247 Chile 513 A 953 953
248 Chile 514 T 953 953
249 Chile 515 G 953 953
250 Chile 516 T 953 953
251 Chile 517 T 954 954
252 Chile 518 A 954 954
253 Chile 519 T 954 954
254 Chile 520 G 954 954
255 Chile 521 G 954 954
256 Chile 522 T 954 954
257 Chile 523 T 954 954
258 Chile 524 G 954 954
259 Chile 525 A G 954 953 Glu87Gly
260 Chile 526 G T 954 952 Glu87Asp
261 Chile 527 C 954 954
262 Chile 528 T 954 954
263 Chile 529 G T 954 953 Leu88Leu
264 Chile 530 G 954 954
265 Chile 531 T 954 954
266 Chile 532 A G 954 953 Val89Val
267 Chile 533 G 954 954
268 Chile 534 C 954 954
269 Chile 535 A 954 954
270 Chile 536 G 954 954
271 Chile 537 A 954 954
272 Chile 538 A 954 954
273 Chile 539 C 954 954
274 Chile 540 T 954 954
275 Chile 541 C 954 954
276 Chile 542 G 954 954
277 Chile 543 A 954 954
278 Chile 544 A G 954 952 Glu93Glu
279 Chile 545 G A 954 953 Gly94Ser
280 Chile 546 G 954 954
281 Chile 547 C 954 954
282 Chile 548 A 954 954
283 Chile 549 T 954 954
284 Chile 550 T 954 954
285 Chile 551 C 954 954
286 Chile 552 A 954 954
287 Chile 553 G 954 954
288 Chile 554 T 954 954
289 Chile 555 A 954 954
290 Chile 556 C T 954 952 Tyr97Tyr
291 Chile 557 G 954 954
292 Chile 558 G 954 954
293 Chile 559 T 954 954
294 Chile 560 C 954 954
295 Chile 561 G 954 954
296 Chile 562 T 954 954
297 Chile 563 A 954 954
298 Chile 564 G 954 954
299 Chile 565 T 964 964
300 Chile 566 G 964 964
301 Chile 567 G 964 964
302 Chile 568 T 964 964
303 Chile 569 G 964 964
304 Chile 570 A 964 964
305 Chile 571 G 964 964
306 Chile 572 A 964 964
307 Chile 573 C 964 964
308 Chile 574 A 964 964
309 Chile 575 C T 964 963 Leu104Phe
310 Chile 576 T 964 964
311 Chile 577 T A 964 954 Leu104Leu
312 Chile 578 G 964 964
313 Chile 579 G 964 964
314 Chile 580 T 964 964
315 Chile 581 G 964 964
316 Chile 582 T 964 964
317 Chile 583 C 964 964
318 Chile 584 C 964 964
319 Chile 585 T 964 964
320 Chile 586 T 964 964
321 Chile 587 G 964 964
322 Chile 588 T 964 964
323 Chile 589 C 964 964
324 Chile 590 C 964 964
325 Chile 591 C 964 964
326 Chile 592 T 964 964
327 Chile 593 C T 964 962 His110Tyr
328 Chile 594 A 964 964
329 Chile 595 T 964 963
330 Chile 596 G 964 964
331 Chile 597 T 964 964
332 Chile 598 G T 964 963 Val111Val
333 Chile 599 G A 964 962 Gly112Ser
334 Chile 600 G 964 964
335 Chile 601 C 964 964
336 Chile 602 G 964 964
337 Chile 603 A 964 964
338 Chile 604 A 964 964
339 Chile 605 A 964 964
340 Chile 606 T 964 964
341 Chile 607 A 964 964
342 Chile 608 C 964 964
343 Chile 609 C 964 964
344 Chile 610 A 964 964
345 Chile 611 G 964 964
346 Chile 612 T 964 964
347 Chile 613 G 964 964
348 Chile 614 G 964 964
349 Chile 615 C 964 964
350 Chile 616 T 964 964
351 Chile 617 T C 964 963 Tyr118His
352 Chile 618 A 964 964
353 Chile 619 C 964 964
354 Chile 620 C 964 964
355 Chile 621 G A 964 963 Arg119His
356 Chile 622 C 964 964
357 Chile 623 A 964 964
358 Chile 624 A 964 964
359 Chile 625 G 964 964
360 Chile 626 G 963 963
361 Chile 627 T 963 963
362 Chile 628 T 963 963
363 Chile 629 C 963 963
364 Chile 630 T 963 963
365 Chile 631 T 963 963
366 Chile 632 C T 963 962 Leu123Phe
367 Chile 633 T 963 963
368 Chile 634 T 963 963
369 Chile 635 C 963 963
370 Chile 636 G 963 963
371 Chile 637 T 963 963
372 Chile 638 A 963 963
373 Chile 639 A 963 963
374 Chile 640 G 963 963
375 Chile 641 A 963 963
376 Chile 642 A 963 963
377 Chile 643 C 963 963
378 Chile 644 G 963 962
379 Chile 645 G 963 962
380 Chile 646 T 963 962
381 Chile 647 A 963 962
382 Chile 648 A 963 962
383 Chile 649 T 963 962
384 Chile 650 A 963 962
385 Chile 651 A 963 962
386 Chile 652 A 963 962
387 Chile 653 G 963 962
388 Chile 654 G 963 962
389 Chile 655 A 963 962
390 Chile 656 G 963 962
391 Chile 657 C 963 961
392 Chile 658 T 963 962
393 Chile 659 G 963 962
394 Chile 660 G 963 962
395 Chile 661 T 963 962
396 Chile 662 G 963 962
397 Chile 663 G 963 962
398 Chile 664 C 963 962
399 Chile 665 C 965 965
400 Chile 666 A 965 965
401 Chile 667 T 965 965
402 Chile 668 A 965 965
403 Chile 669 G 965 965
404 Chile 670 T 965 965
405 Chile 671 T 965 965
406 Chile 672 A 965 965
407 Chile 673 C 965 965
408 Chile 674 G 965 965
409 Chile 675 G 965 965
410 Chile 676 C 965 965
411 Chile 677 G 965 965
412 Chile 678 C 965 965
413 Chile 679 C 965 965
414 Chile 680 G 965 965
415 Chile 681 A 965 965
416 Chile 682 T 965 965
417 Chile 683 C T 965 964 Leu140Leu
418 Chile 684 T 965 965
419 Chile 685 A 965 965
420 Chile 686 A 964 964
421 Chile 687 A 964 964
422 Chile 688 G 964 964
423 Chile 689 T 964 964
424 Chile 690 C 964 964
425 Chile 691 A 964 964
426 Chile 692 T 964 964
427 Chile 693 T 964 964
428 Chile 694 T 964 964
429 Chile 695 G 964 964
430 Chile 696 A 964 964
431 Chile 697 C 964 964
432 Chile 698 T 964 964
433 Chile 699 T 964 964
434 Chile 700 A 964 964
435 Chile 701 G 964 964
436 Chile 702 G 964 964
437 Chile 703 C 964 964
438 Chile 704 G 964 964
439 Chile 705 A 964 964
440 Chile 706 C 964 964
441 Chile 707 G 964 964
442 Chile 708 A 964 964
443 Chile 709 G 964 964
444 Chile 710 C 964 964
445 Chile 711 T 964 964
446 Chile 712 T 964 964
447 Chile 713 G 964 964
448 Chile 714 G 964 964
449 Chile 715 C 964 964
450 Chile 716 A 964 964
451 Chile 717 C 964 964
452 Chile 718 T 964 964
453 Chile 719 G 964 964
454 Chile 720 A 964 964
455 Chile 721 T 964 964
456 Chile 722 C 964 964
457 Chile 723 C 964 964
458 Chile 724 T 964 964
459 Chile 725 T 964 964
460 Chile 726 A 964 964
461 Chile 727 T 964 964
462 Chile 728 G 964 964
463 Chile 729 A 964 964
464 Chile 730 A 964 964
465 Chile 731 G 964 964
466 Chile 732 A 964 964
467 Chile 733 T 964 964
468 Chile 734 T 964 964
469 Chile 735 T 964 964
470 Chile 736 T 964 964
471 Chile 737 C 964 964
472 Chile 738 A 964 964
473 Chile 739 A 964 964
474 Chile 740 G 964 964
475 Chile 741 A 964 964
476 Chile 742 A 964 964
477 Chile 743 A 964 964
478 Chile 744 A 964 964
479 Chile 745 C 964 964
480 Chile 746 T 966 966
481 Chile 747 G 966 966
482 Chile 748 G 966 966
483 Chile 749 A 966 966
484 Chile 750 A 966 966
485 Chile 751 C 966 966
486 Chile 752 A 966 966
487 Chile 753 C 966 966
488 Chile 754 T 966 966
489 Chile 755 A 966 966
490 Chile 756 A 966 966
491 Chile 757 A 966 966
492 Chile 758 C 966 966
493 Chile 759 A 966 966
494 Chile 760 T 966 966
495 Chile 761 A 966 966
496 Chile 762 G 966 966
497 Chile 763 C 966 966
498 Chile 764 A 966 966
499 Chile 765 G 966 966
500 Chile 766 T 966 966
501 Chile 767 G 966 966
502 Chile 768 G 966 966
503 Chile 769 T 966 966
504 Chile 770 G 966 966
505 Chile 771 T 966 966
506 Chile 772 T 966 966
507 Chile 773 A 966 966
508 Chile 774 C 966 966
509 Chile 775 C 966 966
510 Chile 776 C 966 966
511 Chile 777 G 966 966
512 Chile 778 T 966 966
513 Chile 779 G 966 966
514 Chile 780 A 966 966
515 Chile 781 A 966 966
516 Chile 782 C 966 966
517 Chile 783 T 966 966
518 Chile 784 C 966 966
519 Chile 785 A 966 966
520 Chile 786 T 966 966
521 Chile 787 G 966 966
522 Chile 788 C 966 966
523 Chile 789 G 966 966
524 Chile 790 T 966 966
525 Chile 791 G 966 966
526 Chile 792 A 966 966
527 Chile 793 G 966 966
528 Chile 794 C 966 966
529 Chile 795 T 966 966
530 Chile 796 T 966 966
531 Chile 797 A 966 966
532 Chile 798 A 966 966
533 Chile 799 C 966 966
534 Chile 800 G 966 966
535 Chile 801 G 966 966
536 Chile 802 A 966 966
537 Chile 803 G 966 966
538 Chile 804 G 966 966
539 Chile 805 G 966 966