National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   540                                        
?                                            
A   21                                        
C   3                                        
D   27           1                            
E   54     1 3                                
F   15                   1                    
G   66           5                            
H   21                             1          
I   9               1                 1      
K   27                 1                      
L   63                   2                    
M   9               1                        
N   18                       1                
P   24                         2              
Q   21                                        
R   30   1                                    
S   30 1         1                   2        
T   21                                 1      
V   63 1                                 6    
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Cambodia 266 A 4 4
1 Cambodia 267 T 4 4
2 Cambodia 268 G 4 4
3 Cambodia 269 G 4 4
4 Cambodia 270 A 4 4
5 Cambodia 271 G 4 4
6 Cambodia 272 A 4 4
7 Cambodia 273 G 4 4
8 Cambodia 274 C 4 4
9 Cambodia 275 C 4 4
10 Cambodia 276 T 4 4
11 Cambodia 277 T 4 4
12 Cambodia 278 G 4 4
13 Cambodia 279 T 4 4
14 Cambodia 280 C 4 4
15 Cambodia 281 C 4 4
16 Cambodia 282 C 4 4
17 Cambodia 283 T 4 4
18 Cambodia 284 G 4 4
19 Cambodia 285 G 4 4
20 Cambodia 286 T 4 4
21 Cambodia 287 T 4 4
22 Cambodia 288 T 4 4
23 Cambodia 289 C 4 4
24 Cambodia 290 A 4 4
25 Cambodia 291 A 4 4
26 Cambodia 292 C 4 4
27 Cambodia 293 G 4 4
28 Cambodia 294 A 4 4
29 Cambodia 295 G 4 4
30 Cambodia 296 A 4 4
31 Cambodia 297 A 4 4
32 Cambodia 298 A 4 4
33 Cambodia 299 A 4 4
34 Cambodia 300 C 4 4
35 Cambodia 301 A 4 4
36 Cambodia 302 C 4 4
37 Cambodia 303 A 4 4
38 Cambodia 304 C 4 4
39 Cambodia 305 G 4 4
40 Cambodia 306 T 4 4
41 Cambodia 307 C 4 4
42 Cambodia 308 C 4 4
43 Cambodia 309 A 4 4
44 Cambodia 310 A 4 4
45 Cambodia 311 C 4 4
46 Cambodia 312 T 4 4
47 Cambodia 313 C T 4 2 Leu16Leu
48 Cambodia 314 A 4 4
49 Cambodia 315 G 4 4
50 Cambodia 316 T 4 4
51 Cambodia 317 T 4 4
52 Cambodia 318 T 4 4
53 Cambodia 319 G 4 4
54 Cambodia 320 C 4 4
55 Cambodia 321 C 4 4
56 Cambodia 322 T 4 4
57 Cambodia 323 G 4 4
58 Cambodia 324 T 4 4
59 Cambodia 325 T C 4 2 Val20Val
60 Cambodia 326 T 4 4
61 Cambodia 327 T 4 4
62 Cambodia 328 A 4 4
63 Cambodia 329 C 4 4
64 Cambodia 330 A 4 4
65 Cambodia 331 G 4 4
66 Cambodia 332 G 4 4
67 Cambodia 333 T 4 4
68 Cambodia 334 T 4 4
69 Cambodia 335 C T 4 2 Arg24Cys
70 Cambodia 336 G 4 4
71 Cambodia 337 C 4 4
72 Cambodia 338 G 4 4
73 Cambodia 339 A 4 4
74 Cambodia 340 C 4 4
75 Cambodia 341 G 4 4
76 Cambodia 342 T 4 4
77 Cambodia 343 G 4 4
78 Cambodia 344 C 4 4
79 Cambodia 345 T 4 4
80 Cambodia 346 C 4 4
81 Cambodia 347 G 4 4
82 Cambodia 348 T 4 4
83 Cambodia 349 A 4 4
84 Cambodia 350 C 4 4
85 Cambodia 351 G 4 4
86 Cambodia 352 T 4 4
87 Cambodia 353 G 4 4
88 Cambodia 354 G 4 4
89 Cambodia 355 C 4 4
90 Cambodia 356 T 4 4
91 Cambodia 357 T 4 4
92 Cambodia 358 T 4 4
93 Cambodia 359 G 4 4
94 Cambodia 360 G 4 4
95 Cambodia 361 A 4 4
96 Cambodia 362 G 4 4
97 Cambodia 363 A 4 4
98 Cambodia 364 C 4 4
99 Cambodia 365 T 4 4
100 Cambodia 366 C 4 4
101 Cambodia 367 C 4 4
102 Cambodia 368 G 4 4
103 Cambodia 369 T 4 4
104 Cambodia 370 G 4 4
105 Cambodia 371 G 4 4
106 Cambodia 372 A 4 4
107 Cambodia 373 G 4 4
108 Cambodia 374 G 4 4
109 Cambodia 375 A 4 4
110 Cambodia 376 G 4 4
111 Cambodia 377 G 4 4
112 Cambodia 378 T C 4 2 Val38Ala
113 Cambodia 379 C T 4 2 Val38Val
114 Cambodia 380 T 4 4
115 Cambodia 381 T 4 4
116 Cambodia 382 A G 4 2 Leu39Leu
117 Cambodia 383 T G 4 2 Ser40Ala
118 Cambodia 384 C 4 4
119 Cambodia 385 A 4 4
120 Cambodia 386 G 4 4
121 Cambodia 387 A 4 4
122 Cambodia 388 G 4 4
123 Cambodia 389 G 4 4
124 Cambodia 390 C 4 4
125 Cambodia 391 A 4 4
126 Cambodia 392 C 4 4
127 Cambodia 393 G 4 4
128 Cambodia 394 T 4 4
129 Cambodia 395 C 4 4
130 Cambodia 396 A 4 4
131 Cambodia 397 A 4 4
132 Cambodia 398 C 4 4
133 Cambodia 399 A 4 4
134 Cambodia 400 T 4 4
135 Cambodia 401 C 4 4
136 Cambodia 402 T 4 4
137 Cambodia 403 T 4 4
138 Cambodia 404 A 4 4
139 Cambodia 405 A 4 4
140 Cambodia 406 A 4 4
141 Cambodia 407 G 4 4
142 Cambodia 408 A 4 4
143 Cambodia 409 T 4 4
144 Cambodia 410 G 4 4
145 Cambodia 411 G 4 4
146 Cambodia 412 C 4 4
147 Cambodia 413 A 4 4
148 Cambodia 414 C 4 4
149 Cambodia 415 T 4 4
150 Cambodia 416 T 4 4
151 Cambodia 417 G 4 4
152 Cambodia 418 T 4 4
153 Cambodia 419 G 4 4
154 Cambodia 420 G 4 4
155 Cambodia 421 C 4 4
156 Cambodia 422 T 4 4
157 Cambodia 423 T 4 4
158 Cambodia 424 A 4 4
159 Cambodia 425 G 4 4
160 Cambodia 426 T 4 4
161 Cambodia 427 A 4 4
162 Cambodia 428 G 4 4
163 Cambodia 429 A 4 4
164 Cambodia 430 A 4 4
165 Cambodia 431 G 4 4
166 Cambodia 432 T 4 4
167 Cambodia 433 T 4 4
168 Cambodia 434 G 4 4
169 Cambodia 435 A 4 4
170 Cambodia 436 A 4 4
171 Cambodia 437 A 4 4
172 Cambodia 438 A 4 4
173 Cambodia 439 A 4 4
174 Cambodia 440 G 4 4
175 Cambodia 441 G 4 4
176 Cambodia 442 C 4 4
177 Cambodia 443 G 4 4
178 Cambodia 444 T 4 4
179 Cambodia 445 T 4 4
180 Cambodia 446 T 4 4
181 Cambodia 447 T 4 4
182 Cambodia 448 G 4 4
183 Cambodia 449 C 4 4
184 Cambodia 450 C 4 4
185 Cambodia 451 T 4 4
186 Cambodia 452 C 4 4
187 Cambodia 453 A 4 4
188 Cambodia 454 A 4 4
189 Cambodia 455 C 4 4
190 Cambodia 456 T 4 4
191 Cambodia 457 T 4 4
192 Cambodia 458 G 4 4
193 Cambodia 459 A 4 4
194 Cambodia 460 A 4 4
195 Cambodia 461 C 4 4
196 Cambodia 462 A 4 4
197 Cambodia 463 G 4 4
198 Cambodia 464 C 4 4
199 Cambodia 465 C 4 4
200 Cambodia 466 C 4 4
201 Cambodia 467 T 4 4
202 Cambodia 468 A 4 4
203 Cambodia 469 T 4 4
204 Cambodia 470 G 4 4
205 Cambodia 471 T 4 4
206 Cambodia 472 G 4 4
207 Cambodia 473 T 4 4
208 Cambodia 474 T 4 4
209 Cambodia 475 C 4 4
210 Cambodia 476 A 4 4
211 Cambodia 477 T 4 4
212 Cambodia 478 C T 4 2 Ile71Ile
213 Cambodia 479 A 4 4
214 Cambodia 480 A 4 4
215 Cambodia 481 A 4 4
216 Cambodia 482 C 4 4
217 Cambodia 483 G 4 4
218 Cambodia 484 T 4 4
219 Cambodia 485 T 4 4
220 Cambodia 486 C 4 4
221 Cambodia 487 G T 4 2 Ser74Ser
222 Cambodia 488 G 4 4
223 Cambodia 489 A 4 4
224 Cambodia 490 T 4 4
225 Cambodia 491 G 4 4
226 Cambodia 492 C 4 4
227 Cambodia 493 T 4 4
228 Cambodia 494 C 4 4
229 Cambodia 495 G 4 4
230 Cambodia 496 A 4 4
231 Cambodia 497 A 4 4
232 Cambodia 498 C 4 4
233 Cambodia 499 T 4 4
234 Cambodia 500 G 4 4
235 Cambodia 501 C 4 4
236 Cambodia 502 A 4 4
237 Cambodia 503 C 4 4
238 Cambodia 504 C 4 4
239 Cambodia 505 T 4 4
240 Cambodia 506 C 4 4
241 Cambodia 507 A 4 4
242 Cambodia 508 T 4 4
243 Cambodia 509 G 4 4
244 Cambodia 510 G 4 4
245 Cambodia 511 T C 4 2 Gly82Gly
246 Cambodia 512 C 4 4
247 Cambodia 513 A G 4 2 His83Arg
248 Cambodia 514 T 4 4
249 Cambodia 515 G 4 4
250 Cambodia 516 T 4 4
251 Cambodia 517 T A 4 2 Val84Val
252 Cambodia 518 A 4 4
253 Cambodia 519 T 4 4
254 Cambodia 520 G 4 4
255 Cambodia 521 G 4 4
256 Cambodia 522 T 4 4
257 Cambodia 523 T 4 4
258 Cambodia 524 G 4 4
259 Cambodia 525 A 4 4
260 Cambodia 526 G A 4 2 Glu87Glu
261 Cambodia 527 C 4 4
262 Cambodia 528 T 4 4
263 Cambodia 529 G 4 4
264 Cambodia 530 G 4 4
265 Cambodia 531 T 4 4
266 Cambodia 532 A 4 4
267 Cambodia 533 G 4 4
268 Cambodia 534 C 4 4
269 Cambodia 535 A 4 4
270 Cambodia 536 G 4 4
271 Cambodia 537 A 4 4
272 Cambodia 538 A 4 4
273 Cambodia 539 C 4 4
274 Cambodia 540 T 4 4
275 Cambodia 541 C 4 4
276 Cambodia 542 G 4 4
277 Cambodia 543 A 4 4
278 Cambodia 544 A T 4 2 Glu93Asp
279 Cambodia 545 G 4 4
280 Cambodia 546 G 4 4
281 Cambodia 547 C T 4 2 Gly94Gly
282 Cambodia 548 A 4 4
283 Cambodia 549 T 4 4
284 Cambodia 550 T 4 4
285 Cambodia 551 C 4 4
286 Cambodia 552 A 4 4
287 Cambodia 553 G 4 4
288 Cambodia 554 T 4 4
289 Cambodia 555 A 4 4
290 Cambodia 556 C 4 4
291 Cambodia 557 G 4 4
292 Cambodia 558 G 4 4
293 Cambodia 559 T 4 4
294 Cambodia 560 C 4 4
295 Cambodia 561 G 4 4
296 Cambodia 562 T 4 4
297 Cambodia 563 A 4 4
298 Cambodia 564 G 4 4
299 Cambodia 565 T 4 4
300 Cambodia 566 G 4 4
301 Cambodia 567 G 4 4
302 Cambodia 568 T 4 4
303 Cambodia 569 G 4 4
304 Cambodia 570 A 4 4
305 Cambodia 571 G 4 4
306 Cambodia 572 A 4 4
307 Cambodia 573 C 4 4
308 Cambodia 574 A 4 4
309 Cambodia 575 C 4 4
310 Cambodia 576 T 4 4
311 Cambodia 577 T 4 4
312 Cambodia 578 G 4 4
313 Cambodia 579 G 4 4
314 Cambodia 580 T 4 4
315 Cambodia 581 G 4 4
316 Cambodia 582 T 4 4
317 Cambodia 583 C T 4 2 Val106Val
318 Cambodia 584 C 4 4
319 Cambodia 585 T 4 4
320 Cambodia 586 T 4 4
321 Cambodia 587 G 4 4
322 Cambodia 588 T 4 4
323 Cambodia 589 C T 4 2 Val108Val
324 Cambodia 590 C 4 4
325 Cambodia 591 C 4 4
326 Cambodia 592 T C 4 2 Pro109Pro
327 Cambodia 593 C 4 4
328 Cambodia 594 A 4 4
329 Cambodia 595 T 4 4
330 Cambodia 596 G 4 4
331 Cambodia 597 T 4 4
332 Cambodia 598 G 4 4
333 Cambodia 599 G 4 4
334 Cambodia 600 G 4 4
335 Cambodia 601 C T 4 2 Gly112Gly
336 Cambodia 602 G 4 4
337 Cambodia 603 A 4 4
338 Cambodia 604 A G 4 2 Glu113Glu
339 Cambodia 605 A 4 4
340 Cambodia 606 T C 4 2 Ile114Thr
341 Cambodia 607 A 4 4
342 Cambodia 608 C 4 4
343 Cambodia 609 C 4 4
344 Cambodia 610 A T 4 2 Pro115Pro
345 Cambodia 611 G 4 4
346 Cambodia 612 T 4 4
347 Cambodia 613 G 4 4
348 Cambodia 614 G 4 4
349 Cambodia 615 C 4 4
350 Cambodia 616 T 4 4
351 Cambodia 617 T 4 4
352 Cambodia 618 A 4 4
353 Cambodia 619 C 4 4
354 Cambodia 620 C 4 4
355 Cambodia 621 G 4 4
356 Cambodia 622 C 4 4
357 Cambodia 623 A 4 4
358 Cambodia 624 A 4 4
359 Cambodia 625 G A 4 2 Lys120Lys
360 Cambodia 626 G 4 4
361 Cambodia 627 T 4 4
362 Cambodia 628 T 4 4
363 Cambodia 629 C 4 4
364 Cambodia 630 T 4 4
365 Cambodia 631 T 4 4
366 Cambodia 632 C 4 4
367 Cambodia 633 T 4 4
368 Cambodia 634 T 4 4
369 Cambodia 635 C 4 4
370 Cambodia 636 G 4 4
371 Cambodia 637 T 4 4
372 Cambodia 638 A 4 4
373 Cambodia 639 A 4 4
374 Cambodia 640 G 4 4
375 Cambodia 641 A 4 4
376 Cambodia 642 A 4 4
377 Cambodia 643 C 4 4
378 Cambodia 644 G 4 4
379 Cambodia 645 G 4 4
380 Cambodia 646 T 4 4
381 Cambodia 647 A 4 4
382 Cambodia 648 A 4 4
383 Cambodia 649 T 4 4
384 Cambodia 650 A 4 4
385 Cambodia 651 A 4 4
386 Cambodia 652 A 4 4
387 Cambodia 653 G 4 4
388 Cambodia 654 G 4 4
389 Cambodia 655 A 4 4
390 Cambodia 656 G 4 4
391 Cambodia 657 C 4 4
392 Cambodia 658 T 4 4
393 Cambodia 659 G 4 4
394 Cambodia 660 G 4 4
395 Cambodia 661 T C 4 2 Gly132Gly
396 Cambodia 662 G 4 4
397 Cambodia 663 G 4 4
398 Cambodia 664 C 4 4
399 Cambodia 665 C 4 4
400 Cambodia 666 A 4 4
401 Cambodia 667 T 4 4
402 Cambodia 668 A 4 4
403 Cambodia 669 G 4 4
404 Cambodia 670 T 4 4
405 Cambodia 671 T 4 4
406 Cambodia 672 A 4 4
407 Cambodia 673 C 4 4
408 Cambodia 674 G 4 4
409 Cambodia 675 G 4 4
410 Cambodia 676 C 4 4
411 Cambodia 677 G 4 4
412 Cambodia 678 C 4 4
413 Cambodia 679 C 4 4
414 Cambodia 680 G 4 4
415 Cambodia 681 A 4 4
416 Cambodia 682 T 4 4
417 Cambodia 683 C 4 4
418 Cambodia 684 T 4 4
419 Cambodia 685 A 4 4
420 Cambodia 686 A 4 4
421 Cambodia 687 A 4 4
422 Cambodia 688 G 4 4
423 Cambodia 689 T 4 4
424 Cambodia 690 C 4 4
425 Cambodia 691 A T 4 2 Ser142Ser
426 Cambodia 692 T C 4 2 Phe143Leu
427 Cambodia 693 T 4 4
428 Cambodia 694 T 4 4
429 Cambodia 695 G 4 4
430 Cambodia 696 A G 4 2 Asp144Gly
431 Cambodia 697 C 4 4
432 Cambodia 698 T 4 4
433 Cambodia 699 T 4 4
434 Cambodia 700 A 4 4
435 Cambodia 701 G 4 4
436 Cambodia 702 G 4 4
437 Cambodia 703 C T 4 2 Gly146Gly
438 Cambodia 704 G 4 4
439 Cambodia 705 A 4 4
440 Cambodia 706 C 4 4
441 Cambodia 707 G 4 4
442 Cambodia 708 A 4 4
443 Cambodia 709 G 4 4
444 Cambodia 710 C 4 4
445 Cambodia 711 T 4 4
446 Cambodia 712 T 4 4
447 Cambodia 713 G 4 4
448 Cambodia 714 G 4 4
449 Cambodia 715 C 4 4
450 Cambodia 716 A 4 4
451 Cambodia 717 C 4 4
452 Cambodia 718 T 4 4
453 Cambodia 719 G 4 4
454 Cambodia 720 A 4 4
455 Cambodia 721 T 4 4
456 Cambodia 722 C 4 4
457 Cambodia 723 C 4 4
458 Cambodia 724 T 4 4
459 Cambodia 725 T 4 4
460 Cambodia 726 A 4 4
461 Cambodia 727 T 4 4
462 Cambodia 728 G 4 4
463 Cambodia 729 A 4 4
464 Cambodia 730 A 4 4
465 Cambodia 731 G 4 4
466 Cambodia 732 A 4 4
467 Cambodia 733 T 4 4
468 Cambodia 734 T 4 4
469 Cambodia 735 T 4 4
470 Cambodia 736 T 4 4
471 Cambodia 737 C 4 4
472 Cambodia 738 A 4 4
473 Cambodia 739 A 4 4
474 Cambodia 740 G 4 4
475 Cambodia 741 A 4 4
476 Cambodia 742 A 4 4
477 Cambodia 743 A 4 4
478 Cambodia 744 A 4 4
479 Cambodia 745 C T 4 2 Asn160Asn
480 Cambodia 746 T 4 4
481 Cambodia 747 G 4 4
482 Cambodia 748 G 4 4
483 Cambodia 749 A 4 4
484 Cambodia 750 A 4 4
485 Cambodia 751 C 4 4
486 Cambodia 752 A 4 4
487 Cambodia 753 C 4 4
488 Cambodia 754 T 4 4
489 Cambodia 755 A 4 4
490 Cambodia 756 A 4 4
491 Cambodia 757 A 4 4
492 Cambodia 758 C 4 4
493 Cambodia 759 A 4 4
494 Cambodia 760 T 4 4
495 Cambodia 761 A G 4 2 Ser166Gly
496 Cambodia 762 G 4 4
497 Cambodia 763 C 4 4
498 Cambodia 764 A 4 4
499 Cambodia 765 G 4 4
500 Cambodia 766 T 4 4
501 Cambodia 767 G 4 4
502 Cambodia 768 G 4 4
503 Cambodia 769 T 4 4
504 Cambodia 770 G 4 4
505 Cambodia 771 T 4 4
506 Cambodia 772 T A 4 2 Val169Val
507 Cambodia 773 A 4 4
508 Cambodia 774 C 4 4
509 Cambodia 775 C T 4 2 Thr170Thr
510 Cambodia 776 C 4 4
511 Cambodia 777 G 4 4
512 Cambodia 778 T 4 4
513 Cambodia 779 G 4 4
514 Cambodia 780 A 4 4
515 Cambodia 781 A G 4 2 Glu172Glu
516 Cambodia 782 C 4 4
517 Cambodia 783 T 4 4
518 Cambodia 784 C 4 4
519 Cambodia 785 A 4 4
520 Cambodia 786 T 4 4
521 Cambodia 787 G T 4 2 Met174Ile
522 Cambodia 788 C 4 4
523 Cambodia 789 G 4 4
524 Cambodia 790 T 4 4
525 Cambodia 791 G 4 4
526 Cambodia 792 A 4 4
527 Cambodia 793 G 4 4
528 Cambodia 794 C 4 4
529 Cambodia 795 T 4 4
530 Cambodia 796 T 4 4
531 Cambodia 797 A 4 4
532 Cambodia 798 A 4 4
533 Cambodia 799 C 4 4
534 Cambodia 800 G 4 4
535 Cambodia 801 G 4 4
536 Cambodia 802 A 4 4
537 Cambodia 803 G 4 4
538 Cambodia 804 G 4 4
539 Cambodia 805 G 2 2