National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   540                                        
?                                            
A   21                                        
C   3                                        
D   27                                        
E   54                                        
F   15                                        
G   66                                        
H   21                                        
I   9                                        
K   27                                        
L   63                   1                    
M   9                                        
N   18                                        
P   24                                        
Q   21                                        
R   30                                        
S   30                                        
T   21                                        
V   63                                        
W   3                                        
Y   15                                       1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Bulgaria 266 A 15 15
1 Bulgaria 267 T 15 15
2 Bulgaria 268 G 15 15
3 Bulgaria 269 G 15 15
4 Bulgaria 270 A 15 15
5 Bulgaria 271 G 15 15
6 Bulgaria 272 A 15 15
7 Bulgaria 273 G 15 15
8 Bulgaria 274 C 15 15
9 Bulgaria 275 C 15 15
10 Bulgaria 276 T 15 15
11 Bulgaria 277 T 15 15
12 Bulgaria 278 G 15 15
13 Bulgaria 279 T 15 15
14 Bulgaria 280 C 15 15
15 Bulgaria 281 C 15 15
16 Bulgaria 282 C 15 15
17 Bulgaria 283 T 15 15
18 Bulgaria 284 G 15 15
19 Bulgaria 285 G 15 15
20 Bulgaria 286 T 15 15
21 Bulgaria 287 T 15 15
22 Bulgaria 288 T 15 15
23 Bulgaria 289 C 15 15
24 Bulgaria 290 A 15 15
25 Bulgaria 291 A 15 15
26 Bulgaria 292 C 15 15
27 Bulgaria 293 G 15 15
28 Bulgaria 294 A 15 15
29 Bulgaria 295 G 15 15
30 Bulgaria 296 A 15 15
31 Bulgaria 297 A 15 15
32 Bulgaria 298 A 15 15
33 Bulgaria 299 A 15 15
34 Bulgaria 300 C 15 15
35 Bulgaria 301 A 15 15
36 Bulgaria 302 C 15 15
37 Bulgaria 303 A 15 15
38 Bulgaria 304 C 15 15
39 Bulgaria 305 G 15 15
40 Bulgaria 306 T 15 15
41 Bulgaria 307 C 15 15
42 Bulgaria 308 C 15 15
43 Bulgaria 309 A 15 15
44 Bulgaria 310 A 15 15
45 Bulgaria 311 C 15 15
46 Bulgaria 312 T 15 15
47 Bulgaria 313 C T 15 14 Leu16Leu
48 Bulgaria 314 A 15 15
49 Bulgaria 315 G 15 15
50 Bulgaria 316 T 15 15
51 Bulgaria 317 T 15 15
52 Bulgaria 318 T 15 15
53 Bulgaria 319 G 15 15
54 Bulgaria 320 C 15 15
55 Bulgaria 321 C 15 15
56 Bulgaria 322 T 15 15
57 Bulgaria 323 G 15 15
58 Bulgaria 324 T 15 15
59 Bulgaria 325 T 15 15
60 Bulgaria 326 T 15 15
61 Bulgaria 327 T 15 15
62 Bulgaria 328 A 15 15
63 Bulgaria 329 C 15 15
64 Bulgaria 330 A 15 15
65 Bulgaria 331 G 15 15
66 Bulgaria 332 G 15 15
67 Bulgaria 333 T 15 15
68 Bulgaria 334 T 15 15
69 Bulgaria 335 C 15 15
70 Bulgaria 336 G 15 15
71 Bulgaria 337 C 15 15
72 Bulgaria 338 G 15 15
73 Bulgaria 339 A 15 15
74 Bulgaria 340 C 15 15
75 Bulgaria 341 G 15 15
76 Bulgaria 342 T 15 15
77 Bulgaria 343 G 15 15
78 Bulgaria 344 C 15 15
79 Bulgaria 345 T 15 15
80 Bulgaria 346 C 15 15
81 Bulgaria 347 G 15 15
82 Bulgaria 348 T 15 15
83 Bulgaria 349 A 15 15
84 Bulgaria 350 C 15 15
85 Bulgaria 351 G 15 15
86 Bulgaria 352 T 15 15
87 Bulgaria 353 G 15 15
88 Bulgaria 354 G 15 15
89 Bulgaria 355 C 15 15
90 Bulgaria 356 T 15 15
91 Bulgaria 357 T 15 15
92 Bulgaria 358 T 15 15
93 Bulgaria 359 G 15 15
94 Bulgaria 360 G 15 15
95 Bulgaria 361 A 15 15
96 Bulgaria 362 G 15 15
97 Bulgaria 363 A 15 15
98 Bulgaria 364 C 15 15
99 Bulgaria 365 T 15 15
100 Bulgaria 366 C 15 15
101 Bulgaria 367 C 15 15
102 Bulgaria 368 G 15 15
103 Bulgaria 369 T 15 15
104 Bulgaria 370 G 15 15
105 Bulgaria 371 G 15 15
106 Bulgaria 372 A 15 15
107 Bulgaria 373 G 15 15
108 Bulgaria 374 G 15 15
109 Bulgaria 375 A 15 15
110 Bulgaria 376 G 15 15
111 Bulgaria 377 G 15 15
112 Bulgaria 378 T 15 15
113 Bulgaria 379 C 15 15
114 Bulgaria 380 T 15 15
115 Bulgaria 381 T 15 15
116 Bulgaria 382 A 15 15
117 Bulgaria 383 T 15 15
118 Bulgaria 384 C 15 15
119 Bulgaria 385 A 15 15
120 Bulgaria 386 G 15 15
121 Bulgaria 387 A 15 15
122 Bulgaria 388 G 15 15
123 Bulgaria 389 G 15 15
124 Bulgaria 390 C 15 15
125 Bulgaria 391 A 15 15
126 Bulgaria 392 C 15 15
127 Bulgaria 393 G 15 15
128 Bulgaria 394 T 15 15
129 Bulgaria 395 C 15 15
130 Bulgaria 396 A 15 15
131 Bulgaria 397 A 15 15
132 Bulgaria 398 C 15 15
133 Bulgaria 399 A 15 15
134 Bulgaria 400 T 15 15
135 Bulgaria 401 C 15 15
136 Bulgaria 402 T 15 15
137 Bulgaria 403 T 15 15
138 Bulgaria 404 A 15 15
139 Bulgaria 405 A 15 15
140 Bulgaria 406 A 15 15
141 Bulgaria 407 G 15 15
142 Bulgaria 408 A 15 15
143 Bulgaria 409 T 15 15
144 Bulgaria 410 G 15 15
145 Bulgaria 411 G 15 15
146 Bulgaria 412 C 15 15
147 Bulgaria 413 A 15 15
148 Bulgaria 414 C 15 15
149 Bulgaria 415 T 15 15
150 Bulgaria 416 T 15 15
151 Bulgaria 417 G 15 15
152 Bulgaria 418 T 15 15
153 Bulgaria 419 G 15 15
154 Bulgaria 420 G 15 15
155 Bulgaria 421 C 15 15
156 Bulgaria 422 T 15 15
157 Bulgaria 423 T 15 15
158 Bulgaria 424 A 15 15
159 Bulgaria 425 G 15 15
160 Bulgaria 426 T 15 15
161 Bulgaria 427 A 15 15
162 Bulgaria 428 G 15 15
163 Bulgaria 429 A 15 15
164 Bulgaria 430 A 15 15
165 Bulgaria 431 G 15 15
166 Bulgaria 432 T 15 15
167 Bulgaria 433 T 15 15
168 Bulgaria 434 G 15 15
169 Bulgaria 435 A 15 15
170 Bulgaria 436 A 15 15
171 Bulgaria 437 A 15 15
172 Bulgaria 438 A 15 15
173 Bulgaria 439 A 15 15
174 Bulgaria 440 G 15 15
175 Bulgaria 441 G 15 15
176 Bulgaria 442 C 15 15
177 Bulgaria 443 G 15 15
178 Bulgaria 444 T 15 15
179 Bulgaria 445 T 15 15
180 Bulgaria 446 T 15 15
181 Bulgaria 447 T 15 15
182 Bulgaria 448 G 15 15
183 Bulgaria 449 C 15 15
184 Bulgaria 450 C 15 15
185 Bulgaria 451 T 15 15
186 Bulgaria 452 C 15 15
187 Bulgaria 453 A 15 15
188 Bulgaria 454 A 15 15
189 Bulgaria 455 C 15 15
190 Bulgaria 456 T 15 15
191 Bulgaria 457 T 15 15
192 Bulgaria 458 G 15 15
193 Bulgaria 459 A 15 15
194 Bulgaria 460 A 15 15
195 Bulgaria 461 C 15 15
196 Bulgaria 462 A 15 15
197 Bulgaria 463 G 15 15
198 Bulgaria 464 C 15 15
199 Bulgaria 465 C 15 15
200 Bulgaria 466 C 15 15
201 Bulgaria 467 T 15 15
202 Bulgaria 468 A 15 15
203 Bulgaria 469 T 15 15
204 Bulgaria 470 G 15 15
205 Bulgaria 471 T 15 15
206 Bulgaria 472 G 15 15
207 Bulgaria 473 T 15 15
208 Bulgaria 474 T 15 15
209 Bulgaria 475 C 15 15
210 Bulgaria 476 A 15 15
211 Bulgaria 477 T 15 15
212 Bulgaria 478 C 15 15
213 Bulgaria 479 A 15 15
214 Bulgaria 480 A 15 15
215 Bulgaria 481 A 15 15
216 Bulgaria 482 C 15 15
217 Bulgaria 483 G 15 15
218 Bulgaria 484 T 15 15
219 Bulgaria 485 T 15 15
220 Bulgaria 486 C 15 15
221 Bulgaria 487 G 15 15
222 Bulgaria 488 G 15 15
223 Bulgaria 489 A 15 15
224 Bulgaria 490 T 15 15
225 Bulgaria 491 G 15 15
226 Bulgaria 492 C 15 15
227 Bulgaria 493 T 15 15
228 Bulgaria 494 C 15 15
229 Bulgaria 495 G 15 15
230 Bulgaria 496 A 15 15
231 Bulgaria 497 A 15 15
232 Bulgaria 498 C 15 15
233 Bulgaria 499 T 15 15
234 Bulgaria 500 G 15 15
235 Bulgaria 501 C 15 15
236 Bulgaria 502 A 15 15
237 Bulgaria 503 C 15 15
238 Bulgaria 504 C 15 15
239 Bulgaria 505 T 15 15
240 Bulgaria 506 C 15 15
241 Bulgaria 507 A 15 15
242 Bulgaria 508 T 15 15
243 Bulgaria 509 G 15 15
244 Bulgaria 510 G 15 15
245 Bulgaria 511 T 15 15
246 Bulgaria 512 C 15 15
247 Bulgaria 513 A 15 15
248 Bulgaria 514 T 15 15
249 Bulgaria 515 G 15 15
250 Bulgaria 516 T 15 15
251 Bulgaria 517 T 15 15
252 Bulgaria 518 A 15 15
253 Bulgaria 519 T 15 15
254 Bulgaria 520 G 15 15
255 Bulgaria 521 G 15 15
256 Bulgaria 522 T 15 15
257 Bulgaria 523 T 15 15
258 Bulgaria 524 G 15 15
259 Bulgaria 525 A 15 15
260 Bulgaria 526 G 15 15
261 Bulgaria 527 C 15 15
262 Bulgaria 528 T 15 15
263 Bulgaria 529 G 15 15
264 Bulgaria 530 G 15 15
265 Bulgaria 531 T 15 15
266 Bulgaria 532 A 15 15
267 Bulgaria 533 G 15 15
268 Bulgaria 534 C 15 15
269 Bulgaria 535 A 15 15
270 Bulgaria 536 G 15 15
271 Bulgaria 537 A 15 15
272 Bulgaria 538 A 15 15
273 Bulgaria 539 C 15 15
274 Bulgaria 540 T 15 15
275 Bulgaria 541 C 15 15
276 Bulgaria 542 G 15 15
277 Bulgaria 543 A 15 15
278 Bulgaria 544 A 15 15
279 Bulgaria 545 G 15 15
280 Bulgaria 546 G 15 15
281 Bulgaria 547 C 15 15
282 Bulgaria 548 A 15 15
283 Bulgaria 549 T 15 15
284 Bulgaria 550 T 15 15
285 Bulgaria 551 C 15 15
286 Bulgaria 552 A 15 15
287 Bulgaria 553 G 15 15
288 Bulgaria 554 T 15 15
289 Bulgaria 555 A 15 15
290 Bulgaria 556 C 15 15
291 Bulgaria 557 G 15 15
292 Bulgaria 558 G 15 15
293 Bulgaria 559 T 15 15
294 Bulgaria 560 C 15 15
295 Bulgaria 561 G 15 15
296 Bulgaria 562 T 15 15
297 Bulgaria 563 A 15 15
298 Bulgaria 564 G 15 15
299 Bulgaria 565 T 15 15
300 Bulgaria 566 G 15 15
301 Bulgaria 567 G 15 15
302 Bulgaria 568 T 15 15
303 Bulgaria 569 G 15 15
304 Bulgaria 570 A 15 15
305 Bulgaria 571 G 15 15
306 Bulgaria 572 A 15 15
307 Bulgaria 573 C 15 15
308 Bulgaria 574 A 15 15
309 Bulgaria 575 C 15 15
310 Bulgaria 576 T 15 15
311 Bulgaria 577 T 15 15
312 Bulgaria 578 G 15 15
313 Bulgaria 579 G 15 15
314 Bulgaria 580 T 15 15
315 Bulgaria 581 G 15 15
316 Bulgaria 582 T 15 15
317 Bulgaria 583 C 15 15
318 Bulgaria 584 C 15 15
319 Bulgaria 585 T 15 15
320 Bulgaria 586 T 15 15
321 Bulgaria 587 G 15 15
322 Bulgaria 588 T 15 15
323 Bulgaria 589 C 15 15
324 Bulgaria 590 C 15 15
325 Bulgaria 591 C 15 15
326 Bulgaria 592 T 15 15
327 Bulgaria 593 C 15 15
328 Bulgaria 594 A 15 15
329 Bulgaria 595 T 15 15
330 Bulgaria 596 G 15 15
331 Bulgaria 597 T 15 15
332 Bulgaria 598 G 15 15
333 Bulgaria 599 G 15 15
334 Bulgaria 600 G 15 15
335 Bulgaria 601 C 15 15
336 Bulgaria 602 G 15 15
337 Bulgaria 603 A 15 15
338 Bulgaria 604 A 15 15
339 Bulgaria 605 A 15 15
340 Bulgaria 606 T 15 15
341 Bulgaria 607 A 15 15
342 Bulgaria 608 C 15 15
343 Bulgaria 609 C 15 15
344 Bulgaria 610 A 15 15
345 Bulgaria 611 G 15 15
346 Bulgaria 612 T 15 15
347 Bulgaria 613 G 15 15
348 Bulgaria 614 G 15 15
349 Bulgaria 615 C 15 15
350 Bulgaria 616 T 15 15
351 Bulgaria 617 T 15 15
352 Bulgaria 618 A 15 15
353 Bulgaria 619 C 15 15
354 Bulgaria 620 C 15 15
355 Bulgaria 621 G 15 15
356 Bulgaria 622 C 15 15
357 Bulgaria 623 A 15 15
358 Bulgaria 624 A 15 15
359 Bulgaria 625 G 15 15
360 Bulgaria 626 G 15 15
361 Bulgaria 627 T 15 15
362 Bulgaria 628 T 15 15
363 Bulgaria 629 C 15 15
364 Bulgaria 630 T 15 15
365 Bulgaria 631 T 15 15
366 Bulgaria 632 C 15 15
367 Bulgaria 633 T 15 15
368 Bulgaria 634 T 15 15
369 Bulgaria 635 C 15 15
370 Bulgaria 636 G 15 15
371 Bulgaria 637 T 15 15
372 Bulgaria 638 A 15 15
373 Bulgaria 639 A 15 15
374 Bulgaria 640 G 15 15
375 Bulgaria 641 A 15 15
376 Bulgaria 642 A 15 15
377 Bulgaria 643 C 15 15
378 Bulgaria 644 G 15 15
379 Bulgaria 645 G 15 15
380 Bulgaria 646 T 15 15
381 Bulgaria 647 A 15 15
382 Bulgaria 648 A 15 15
383 Bulgaria 649 T 15 15
384 Bulgaria 650 A 15 15
385 Bulgaria 651 A 15 15
386 Bulgaria 652 A 15 15
387 Bulgaria 653 G 15 15
388 Bulgaria 654 G 15 15
389 Bulgaria 655 A 15 15
390 Bulgaria 656 G 15 15
391 Bulgaria 657 C 15 15
392 Bulgaria 658 T 15 15
393 Bulgaria 659 G 15 15
394 Bulgaria 660 G 15 15
395 Bulgaria 661 T 15 15
396 Bulgaria 662 G 15 15
397 Bulgaria 663 G 15 15
398 Bulgaria 664 C 15 15
399 Bulgaria 665 C 15 15
400 Bulgaria 666 A 15 15
401 Bulgaria 667 T 15 15
402 Bulgaria 668 A 15 15
403 Bulgaria 669 G 15 15
404 Bulgaria 670 T 15 15
405 Bulgaria 671 T 15 15
406 Bulgaria 672 A 15 15
407 Bulgaria 673 C T 15 13 Tyr136Tyr
408 Bulgaria 674 G 15 15
409 Bulgaria 675 G 15 15
410 Bulgaria 676 C 15 15
411 Bulgaria 677 G 15 15
412 Bulgaria 678 C 15 15
413 Bulgaria 679 C 15 15
414 Bulgaria 680 G 15 15
415 Bulgaria 681 A 15 15
416 Bulgaria 682 T 15 15
417 Bulgaria 683 C 15 15
418 Bulgaria 684 T 15 15
419 Bulgaria 685 A 15 15
420 Bulgaria 686 A 15 15
421 Bulgaria 687 A 15 15
422 Bulgaria 688 G 15 15
423 Bulgaria 689 T 15 15
424 Bulgaria 690 C 15 15
425 Bulgaria 691 A 15 15
426 Bulgaria 692 T 15 15
427 Bulgaria 693 T 15 15
428 Bulgaria 694 T 15 15
429 Bulgaria 695 G 15 15
430 Bulgaria 696 A 15 15
431 Bulgaria 697 C 15 15
432 Bulgaria 698 T 15 15
433 Bulgaria 699 T 15 15
434 Bulgaria 700 A 15 15
435 Bulgaria 701 G 15 15
436 Bulgaria 702 G 15 15
437 Bulgaria 703 C 15 15
438 Bulgaria 704 G 15 15
439 Bulgaria 705 A 15 15
440 Bulgaria 706 C 15 15
441 Bulgaria 707 G 15 15
442 Bulgaria 708 A 15 15
443 Bulgaria 709 G 15 15
444 Bulgaria 710 C 15 15
445 Bulgaria 711 T 15 15
446 Bulgaria 712 T 15 15
447 Bulgaria 713 G 15 15
448 Bulgaria 714 G 15 15
449 Bulgaria 715 C 15 15
450 Bulgaria 716 A 15 15
451 Bulgaria 717 C 15 15
452 Bulgaria 718 T 15 15
453 Bulgaria 719 G 15 15
454 Bulgaria 720 A 15 15
455 Bulgaria 721 T 15 15
456 Bulgaria 722 C 15 15
457 Bulgaria 723 C 15 15
458 Bulgaria 724 T 15 15
459 Bulgaria 725 T 15 15
460 Bulgaria 726 A 15 15
461 Bulgaria 727 T 15 15
462 Bulgaria 728 G 15 15
463 Bulgaria 729 A 15 15
464 Bulgaria 730 A 15 15
465 Bulgaria 731 G 15 15
466 Bulgaria 732 A 15 15
467 Bulgaria 733 T 15 15
468 Bulgaria 734 T 15 15
469 Bulgaria 735 T 15 15
470 Bulgaria 736 T 15 15
471 Bulgaria 737 C 15 15
472 Bulgaria 738 A 15 15
473 Bulgaria 739 A 15 15
474 Bulgaria 740 G 15 15
475 Bulgaria 741 A 15 15
476 Bulgaria 742 A 15 15
477 Bulgaria 743 A 15 15
478 Bulgaria 744 A 15 15
479 Bulgaria 745 C 15 15
480 Bulgaria 746 T 15 15
481 Bulgaria 747 G 15 15
482 Bulgaria 748 G 15 15
483 Bulgaria 749 A 15 15
484 Bulgaria 750 A 15 15
485 Bulgaria 751 C 15 15
486 Bulgaria 752 A 15 15
487 Bulgaria 753 C 15 15
488 Bulgaria 754 T 15 15
489 Bulgaria 755 A 15 15
490 Bulgaria 756 A 15 15
491 Bulgaria 757 A 15 15
492 Bulgaria 758 C 15 15
493 Bulgaria 759 A 15 15
494 Bulgaria 760 T 15 15
495 Bulgaria 761 A 15 15
496 Bulgaria 762 G 15 15
497 Bulgaria 763 C 15 15
498 Bulgaria 764 A 15 15
499 Bulgaria 765 G 15 15
500 Bulgaria 766 T 15 15
501 Bulgaria 767 G 15 15
502 Bulgaria 768 G 15 15
503 Bulgaria 769 T 15 15
504 Bulgaria 770 G 15 15
505 Bulgaria 771 T 15 15
506 Bulgaria 772 T 15 15
507 Bulgaria 773 A 15 15
508 Bulgaria 774 C 15 15
509 Bulgaria 775 C 15 15
510 Bulgaria 776 C 15 15
511 Bulgaria 777 G 15 15
512 Bulgaria 778 T 15 15
513 Bulgaria 779 G 15 15
514 Bulgaria 780 A 15 15
515 Bulgaria 781 A 15 15
516 Bulgaria 782 C 15 15
517 Bulgaria 783 T 15 15
518 Bulgaria 784 C 15 15
519 Bulgaria 785 A 15 15
520 Bulgaria 786 T 15 15
521 Bulgaria 787 G 15 15
522 Bulgaria 788 C 15 15
523 Bulgaria 789 G 15 15
524 Bulgaria 790 T 15 15
525 Bulgaria 791 G 15 15
526 Bulgaria 792 A 15 15
527 Bulgaria 793 G 15 15
528 Bulgaria 794 C 15 15
529 Bulgaria 795 T 15 15
530 Bulgaria 796 T 15 15
531 Bulgaria 797 A 15 15
532 Bulgaria 798 A 15 15
533 Bulgaria 799 C 15 15
534 Bulgaria 800 G 15 15
535 Bulgaria 801 G 15 15
536 Bulgaria 802 A 15 15
537 Bulgaria 803 G 15 15
538 Bulgaria 804 G 15 15
539 Bulgaria 805 G 15 15