National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   540                                        
?                                            
A   21                                        
C   3                                        
D   27                                        
E   54                                        
F   15                                        
G   66                                        
H   21                                        
I   9                                        
K   27                                        
L   63                   1                    
M   9                                        
N   18                                        
P   24                                 1      
Q   21                                        
R   30                                        
S   30                                        
T   21                                        
V   63                                        
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Botswana 266 A 13 13
1 Botswana 267 T 13 13
2 Botswana 268 G 13 13
3 Botswana 269 G 13 13
4 Botswana 270 A 13 13
5 Botswana 271 G 13 13
6 Botswana 272 A 13 13
7 Botswana 273 G 13 13
8 Botswana 274 C 13 13
9 Botswana 275 C 13 13
10 Botswana 276 T 13 13
11 Botswana 277 T 13 13
12 Botswana 278 G 13 13
13 Botswana 279 T 13 13
14 Botswana 280 C 13 13
15 Botswana 281 C A 13 12 Pro6Thr
16 Botswana 282 C 13 13
17 Botswana 283 T 13 13
18 Botswana 284 G 13 13
19 Botswana 285 G 13 13
20 Botswana 286 T 13 13
21 Botswana 287 T 13 13
22 Botswana 288 T 13 13
23 Botswana 289 C 13 13
24 Botswana 290 A 13 13
25 Botswana 291 A 13 13
26 Botswana 292 C 13 13
27 Botswana 293 G 13 13
28 Botswana 294 A 13 13
29 Botswana 295 G 13 13
30 Botswana 296 A 13 13
31 Botswana 297 A 13 13
32 Botswana 298 A 13 13
33 Botswana 299 A 13 13
34 Botswana 300 C 13 13
35 Botswana 301 A 13 13
36 Botswana 302 C 13 13
37 Botswana 303 A 13 13
38 Botswana 304 C 13 13
39 Botswana 305 G 13 13
40 Botswana 306 T 13 13
41 Botswana 307 C 13 13
42 Botswana 308 C 13 13
43 Botswana 309 A 13 13
44 Botswana 310 A 13 13
45 Botswana 311 C 13 13
46 Botswana 312 T 13 13
47 Botswana 313 C T 13 11 Leu16Leu
48 Botswana 314 A 13 13
49 Botswana 315 G 13 13
50 Botswana 316 T 13 13
51 Botswana 317 T 13 13
52 Botswana 318 T 13 13
53 Botswana 319 G 13 13
54 Botswana 320 C 13 13
55 Botswana 321 C 13 13
56 Botswana 322 T 13 13
57 Botswana 323 G 13 13
58 Botswana 324 T 13 13
59 Botswana 325 T 13 13
60 Botswana 326 T 13 13
61 Botswana 327 T 13 13
62 Botswana 328 A 13 13
63 Botswana 329 C 13 13
64 Botswana 330 A 13 13
65 Botswana 331 G 13 13
66 Botswana 332 G 13 13
67 Botswana 333 T 13 13
68 Botswana 334 T 13 13
69 Botswana 335 C 13 13
70 Botswana 336 G 13 13
71 Botswana 337 C 13 13
72 Botswana 338 G 13 13
73 Botswana 339 A 13 13
74 Botswana 340 C 13 13
75 Botswana 341 G 13 13
76 Botswana 342 T 13 13
77 Botswana 343 G 13 13
78 Botswana 344 C 13 13
79 Botswana 345 T 13 13
80 Botswana 346 C 13 13
81 Botswana 347 G 13 13
82 Botswana 348 T 13 13
83 Botswana 349 A 13 13
84 Botswana 350 C 13 13
85 Botswana 351 G 13 13
86 Botswana 352 T 13 13
87 Botswana 353 G 13 13
88 Botswana 354 G 13 13
89 Botswana 355 C 13 13
90 Botswana 356 T 13 13
91 Botswana 357 T 13 13
92 Botswana 358 T 13 13
93 Botswana 359 G 13 13
94 Botswana 360 G 13 13
95 Botswana 361 A 13 13
96 Botswana 362 G 13 13
97 Botswana 363 A 13 13
98 Botswana 364 C 13 13
99 Botswana 365 T 13 13
100 Botswana 366 C 13 13
101 Botswana 367 C 13 13
102 Botswana 368 G 13 13
103 Botswana 369 T 13 13
104 Botswana 370 G 13 13
105 Botswana 371 G 13 13
106 Botswana 372 A 13 13
107 Botswana 373 G 13 13
108 Botswana 374 G 13 13
109 Botswana 375 A 13 13
110 Botswana 376 G 13 13
111 Botswana 377 G 13 13
112 Botswana 378 T 13 13
113 Botswana 379 C 13 13
114 Botswana 380 T 13 13
115 Botswana 381 T 13 13
116 Botswana 382 A 13 13
117 Botswana 383 T 13 13
118 Botswana 384 C 13 13
119 Botswana 385 A 13 13
120 Botswana 386 G 13 13
121 Botswana 387 A 13 13
122 Botswana 388 G 13 13
123 Botswana 389 G 13 13
124 Botswana 390 C 13 13
125 Botswana 391 A 13 13
126 Botswana 392 C 13 13
127 Botswana 393 G 13 13
128 Botswana 394 T 13 13
129 Botswana 395 C 13 13
130 Botswana 396 A 13 13
131 Botswana 397 A 13 13
132 Botswana 398 C 13 13
133 Botswana 399 A 13 13
134 Botswana 400 T 13 13
135 Botswana 401 C 13 13
136 Botswana 402 T 13 13
137 Botswana 403 T 13 13
138 Botswana 404 A 13 13
139 Botswana 405 A 13 13
140 Botswana 406 A 13 13
141 Botswana 407 G 13 13
142 Botswana 408 A 13 13
143 Botswana 409 T 13 13
144 Botswana 410 G 13 13
145 Botswana 411 G 13 13
146 Botswana 412 C 13 13
147 Botswana 413 A 13 13
148 Botswana 414 C 13 13
149 Botswana 415 T 13 13
150 Botswana 416 T 13 13
151 Botswana 417 G 13 13
152 Botswana 418 T 13 13
153 Botswana 419 G 13 13
154 Botswana 420 G 13 13
155 Botswana 421 C 13 13
156 Botswana 422 T 13 13
157 Botswana 423 T 13 13
158 Botswana 424 A 13 13
159 Botswana 425 G 13 13
160 Botswana 426 T 13 13
161 Botswana 427 A 13 13
162 Botswana 428 G 13 13
163 Botswana 429 A 13 13
164 Botswana 430 A 13 13
165 Botswana 431 G 13 13
166 Botswana 432 T 13 13
167 Botswana 433 T 13 13
168 Botswana 434 G 13 13
169 Botswana 435 A 13 13
170 Botswana 436 A 13 13
171 Botswana 437 A 13 13
172 Botswana 438 A 13 13
173 Botswana 439 A 13 13
174 Botswana 440 G 13 13
175 Botswana 441 G 13 13
176 Botswana 442 C 13 13
177 Botswana 443 G 13 13
178 Botswana 444 T 13 13
179 Botswana 445 T 13 13
180 Botswana 446 T 13 13
181 Botswana 447 T 13 13
182 Botswana 448 G 13 13
183 Botswana 449 C 13 13
184 Botswana 450 C 13 13
185 Botswana 451 T 13 13
186 Botswana 452 C 13 13
187 Botswana 453 A 13 13
188 Botswana 454 A 13 13
189 Botswana 455 C 13 13
190 Botswana 456 T 13 13
191 Botswana 457 T 13 13
192 Botswana 458 G 13 13
193 Botswana 459 A 13 13
194 Botswana 460 A 13 13
195 Botswana 461 C 13 13
196 Botswana 462 A 13 13
197 Botswana 463 G 13 13
198 Botswana 464 C 13 13
199 Botswana 465 C 13 13
200 Botswana 466 C 13 13
201 Botswana 467 T 13 13
202 Botswana 468 A 13 13
203 Botswana 469 T 13 13
204 Botswana 470 G 13 13
205 Botswana 471 T 13 13
206 Botswana 472 G 13 13
207 Botswana 473 T 13 13
208 Botswana 474 T 13 13
209 Botswana 475 C 13 13
210 Botswana 476 A 13 13
211 Botswana 477 T 13 13
212 Botswana 478 C 13 13
213 Botswana 479 A 13 13
214 Botswana 480 A 13 13
215 Botswana 481 A 13 13
216 Botswana 482 C 13 13
217 Botswana 483 G 13 13
218 Botswana 484 T 13 13
219 Botswana 485 T 13 13
220 Botswana 486 C 13 13
221 Botswana 487 G 13 13
222 Botswana 488 G 13 13
223 Botswana 489 A 13 13
224 Botswana 490 T 13 13
225 Botswana 491 G 13 13
226 Botswana 492 C 13 13
227 Botswana 493 T 13 13
228 Botswana 494 C 13 13
229 Botswana 495 G 13 13
230 Botswana 496 A 13 13
231 Botswana 497 A 13 13
232 Botswana 498 C 13 13
233 Botswana 499 T 13 13
234 Botswana 500 G 13 13
235 Botswana 501 C 13 13
236 Botswana 502 A 13 13
237 Botswana 503 C 13 13
238 Botswana 504 C 13 13
239 Botswana 505 T 13 13
240 Botswana 506 C 13 13
241 Botswana 507 A 13 13
242 Botswana 508 T 13 13
243 Botswana 509 G 13 13
244 Botswana 510 G 13 13
245 Botswana 511 T 13 13
246 Botswana 512 C 13 13
247 Botswana 513 A 13 13
248 Botswana 514 T 13 13
249 Botswana 515 G 13 13
250 Botswana 516 T 13 13
251 Botswana 517 T 13 13
252 Botswana 518 A 13 13
253 Botswana 519 T 13 13
254 Botswana 520 G 13 13
255 Botswana 521 G 13 13
256 Botswana 522 T 13 13
257 Botswana 523 T 13 13
258 Botswana 524 G 13 13
259 Botswana 525 A 13 13
260 Botswana 526 G 13 13
261 Botswana 527 C 13 13
262 Botswana 528 T 13 13
263 Botswana 529 G 13 13
264 Botswana 530 G 13 13
265 Botswana 531 T 13 13
266 Botswana 532 A 13 13
267 Botswana 533 G 13 13
268 Botswana 534 C 13 13
269 Botswana 535 A 13 13
270 Botswana 536 G 13 13
271 Botswana 537 A 13 13
272 Botswana 538 A 13 13
273 Botswana 539 C 13 13
274 Botswana 540 T 13 13
275 Botswana 541 C 13 13
276 Botswana 542 G 13 13
277 Botswana 543 A 13 13
278 Botswana 544 A 13 13
279 Botswana 545 G 13 13
280 Botswana 546 G 13 13
281 Botswana 547 C 13 13
282 Botswana 548 A 13 13
283 Botswana 549 T 13 13
284 Botswana 550 T 13 13
285 Botswana 551 C 13 13
286 Botswana 552 A 13 13
287 Botswana 553 G 13 13
288 Botswana 554 T 13 13
289 Botswana 555 A 13 13
290 Botswana 556 C 13 13
291 Botswana 557 G 13 13
292 Botswana 558 G 13 13
293 Botswana 559 T 13 13
294 Botswana 560 C 13 13
295 Botswana 561 G 13 13
296 Botswana 562 T 13 13
297 Botswana 563 A 13 13
298 Botswana 564 G 13 13
299 Botswana 565 T 13 13
300 Botswana 566 G 13 13
301 Botswana 567 G 13 13
302 Botswana 568 T 13 13
303 Botswana 569 G 13 13
304 Botswana 570 A 13 13
305 Botswana 571 G 13 13
306 Botswana 572 A 13 13
307 Botswana 573 C 13 13
308 Botswana 574 A 13 13
309 Botswana 575 C 13 13
310 Botswana 576 T 13 13
311 Botswana 577 T 13 13
312 Botswana 578 G 13 13
313 Botswana 579 G 13 13
314 Botswana 580 T 13 13
315 Botswana 581 G 13 13
316 Botswana 582 T 13 13
317 Botswana 583 C 13 13
318 Botswana 584 C 13 13
319 Botswana 585 T 13 13
320 Botswana 586 T 13 13
321 Botswana 587 G 13 13
322 Botswana 588 T 13 13
323 Botswana 589 C 13 13
324 Botswana 590 C 13 13
325 Botswana 591 C 13 13
326 Botswana 592 T 13 13
327 Botswana 593 C 13 13
328 Botswana 594 A 13 13
329 Botswana 595 T 13 13
330 Botswana 596 G 13 13
331 Botswana 597 T 13 13
332 Botswana 598 G 13 13
333 Botswana 599 G 13 13
334 Botswana 600 G 13 13
335 Botswana 601 C 13 13
336 Botswana 602 G 13 13
337 Botswana 603 A 13 13
338 Botswana 604 A 13 13
339 Botswana 605 A 13 13
340 Botswana 606 T 13 13
341 Botswana 607 A 13 13
342 Botswana 608 C 13 13
343 Botswana 609 C 13 13
344 Botswana 610 A 13 13
345 Botswana 611 G 13 13
346 Botswana 612 T 13 13
347 Botswana 613 G 13 13
348 Botswana 614 G 13 13
349 Botswana 615 C 13 13
350 Botswana 616 T 13 13
351 Botswana 617 T 13 13
352 Botswana 618 A 13 13
353 Botswana 619 C 13 13
354 Botswana 620 C 13 13
355 Botswana 621 G 13 13
356 Botswana 622 C 13 13
357 Botswana 623 A 13 13
358 Botswana 624 A 13 13
359 Botswana 625 G 13 13
360 Botswana 626 G 13 13
361 Botswana 627 T 13 13
362 Botswana 628 T 13 13
363 Botswana 629 C 13 13
364 Botswana 630 T 13 13
365 Botswana 631 T 13 13
366 Botswana 632 C 13 13
367 Botswana 633 T 13 13
368 Botswana 634 T 13 13
369 Botswana 635 C 13 13
370 Botswana 636 G 13 13
371 Botswana 637 T 13 13
372 Botswana 638 A 13 13
373 Botswana 639 A 13 13
374 Botswana 640 G 13 13
375 Botswana 641 A 13 13
376 Botswana 642 A 13 13
377 Botswana 643 C 13 13
378 Botswana 644 G 13 13
379 Botswana 645 G 13 13
380 Botswana 646 T 13 13
381 Botswana 647 A 13 13
382 Botswana 648 A 13 13
383 Botswana 649 T 13 13
384 Botswana 650 A 13 13
385 Botswana 651 A 13 13
386 Botswana 652 A 13 13
387 Botswana 653 G 13 13
388 Botswana 654 G 13 13
389 Botswana 655 A 13 13
390 Botswana 656 G 13 13
391 Botswana 657 C 13 13
392 Botswana 658 T 13 13
393 Botswana 659 G 13 13
394 Botswana 660 G 13 13
395 Botswana 661 T 13 13
396 Botswana 662 G 13 13
397 Botswana 663 G 13 13
398 Botswana 664 C 13 13
399 Botswana 665 C 13 13
400 Botswana 666 A 13 13
401 Botswana 667 T 13 13
402 Botswana 668 A 13 13
403 Botswana 669 G 13 13
404 Botswana 670 T 13 13
405 Botswana 671 T 13 13
406 Botswana 672 A 13 13
407 Botswana 673 C 13 13
408 Botswana 674 G 13 13
409 Botswana 675 G 13 13
410 Botswana 676 C 13 13
411 Botswana 677 G 13 13
412 Botswana 678 C 13 13
413 Botswana 679 C 13 13
414 Botswana 680 G 13 13
415 Botswana 681 A 13 13
416 Botswana 682 T 13 13
417 Botswana 683 C 13 13
418 Botswana 684 T 13 13
419 Botswana 685 A 13 13
420 Botswana 686 A 13 13
421 Botswana 687 A 13 13
422 Botswana 688 G 13 13
423 Botswana 689 T 13 13
424 Botswana 690 C 13 13
425 Botswana 691 A 13 13
426 Botswana 692 T 13 13
427 Botswana 693 T 13 13
428 Botswana 694 T 13 13
429 Botswana 695 G 13 13
430 Botswana 696 A 13 13
431 Botswana 697 C 13 13
432 Botswana 698 T 13 13
433 Botswana 699 T 13 13
434 Botswana 700 A 13 13
435 Botswana 701 G 13 13
436 Botswana 702 G 13 13
437 Botswana 703 C 13 13
438 Botswana 704 G 13 13
439 Botswana 705 A 13 13
440 Botswana 706 C 13 13
441 Botswana 707 G 13 13
442 Botswana 708 A 13 13
443 Botswana 709 G 13 13
444 Botswana 710 C 13 13
445 Botswana 711 T 13 13
446 Botswana 712 T 13 13
447 Botswana 713 G 13 13
448 Botswana 714 G 13 13
449 Botswana 715 C 13 13
450 Botswana 716 A 13 13
451 Botswana 717 C 13 13
452 Botswana 718 T 13 13
453 Botswana 719 G 13 13
454 Botswana 720 A 13 13
455 Botswana 721 T 13 13
456 Botswana 722 C 13 13
457 Botswana 723 C 13 13
458 Botswana 724 T 13 13
459 Botswana 725 T 13 13
460 Botswana 726 A 13 13
461 Botswana 727 T 13 13
462 Botswana 728 G 13 13
463 Botswana 729 A 13 13
464 Botswana 730 A 13 13
465 Botswana 731 G 13 13
466 Botswana 732 A 13 13
467 Botswana 733 T 13 13
468 Botswana 734 T 13 13
469 Botswana 735 T 13 13
470 Botswana 736 T 13 13
471 Botswana 737 C 13 13
472 Botswana 738 A 13 13
473 Botswana 739 A 13 13
474 Botswana 740 G 13 13
475 Botswana 741 A 13 13
476 Botswana 742 A 13 13
477 Botswana 743 A 13 13
478 Botswana 744 A 13 13
479 Botswana 745 C 13 13
480 Botswana 746 T 13 13
481 Botswana 747 G 13 13
482 Botswana 748 G 13 13
483 Botswana 749 A 13 13
484 Botswana 750 A 13 13
485 Botswana 751 C 13 13
486 Botswana 752 A 13 13
487 Botswana 753 C 13 13
488 Botswana 754 T 13 13
489 Botswana 755 A 13 13
490 Botswana 756 A 13 13
491 Botswana 757 A 13 13
492 Botswana 758 C 13 13
493 Botswana 759 A 13 13
494 Botswana 760 T 13 13
495 Botswana 761 A 13 13
496 Botswana 762 G 13 13
497 Botswana 763 C 13 13
498 Botswana 764 A 13 13
499 Botswana 765 G 13 13
500 Botswana 766 T 13 13
501 Botswana 767 G 13 13
502 Botswana 768 G 13 13
503 Botswana 769 T 13 13
504 Botswana 770 G 13 13
505 Botswana 771 T 13 13
506 Botswana 772 T 13 13
507 Botswana 773 A 13 13
508 Botswana 774 C 13 13
509 Botswana 775 C 13 13
510 Botswana 776 C 13 13
511 Botswana 777 G 13 13
512 Botswana 778 T 13 13
513 Botswana 779 G 13 13
514 Botswana 780 A 13 13
515 Botswana 781 A 13 13
516 Botswana 782 C 13 13
517 Botswana 783 T 13 13
518 Botswana 784 C 13 13
519 Botswana 785 A 13 13
520 Botswana 786 T 13 13
521 Botswana 787 G 13 13
522 Botswana 788 C 13 13
523 Botswana 789 G 13 13
524 Botswana 790 T 13 13
525 Botswana 791 G 13 13
526 Botswana 792 A 13 13
527 Botswana 793 G 13 13
528 Botswana 794 C 13 13
529 Botswana 795 T 13 13
530 Botswana 796 T 13 13
531 Botswana 797 A 13 13
532 Botswana 798 A 13 13
533 Botswana 799 C 13 13
534 Botswana 800 G 13 13
535 Botswana 801 G 13 13
536 Botswana 802 A 13 13
537 Botswana 803 G 13 13
538 Botswana 804 G 13 13
539 Botswana 805 G 13 13