National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   540                                        
?                                            
A   21                               1   1    
C   3                                        
D   27     1                                  
E   54     2           1                      
F   15                                        
G   66     1     4                            
H   21                             1          
I   9               1                        
K   27                       1                
L   63               1   3                    
M   9                                        
N   18                       3                
P   24                         1              
Q   21                                        
R   30   2                                    
S   30                               2        
T   21               1                        
V   63 1   1         1                   3    
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Bangladesh 266 A 647 647
1 Bangladesh 267 T 647 647
2 Bangladesh 268 G 647 647
3 Bangladesh 269 G 647 647
4 Bangladesh 270 A 647 647
5 Bangladesh 271 G 647 647
6 Bangladesh 272 A 647 647
7 Bangladesh 273 G 647 647
8 Bangladesh 274 C 647 647
9 Bangladesh 275 C 647 647
10 Bangladesh 276 T 647 647
11 Bangladesh 277 T 647 647
12 Bangladesh 278 G 647 647
13 Bangladesh 279 T 647 647
14 Bangladesh 280 C T 647 646 Val5Val
15 Bangladesh 281 C 647 647
16 Bangladesh 282 C 647 647
17 Bangladesh 283 T 647 647
18 Bangladesh 284 G 647 647
19 Bangladesh 285 G 647 647
20 Bangladesh 286 T 647 647
21 Bangladesh 287 T 647 647
22 Bangladesh 288 T 647 647
23 Bangladesh 289 C 647 647
24 Bangladesh 290 A 647 646
25 Bangladesh 291 A 647 646
26 Bangladesh 292 C T 647 645 Asn9Asn
27 Bangladesh 293 G 647 646
28 Bangladesh 294 A 647 646
29 Bangladesh 295 G 647 646
30 Bangladesh 296 A 647 646
31 Bangladesh 297 A 647 646
32 Bangladesh 298 A 647 646
33 Bangladesh 299 A 647 646
34 Bangladesh 300 C 647 646
35 Bangladesh 301 A 647 646
36 Bangladesh 302 C 647 646
37 Bangladesh 303 A 647 646
38 Bangladesh 304 C 647 646
39 Bangladesh 305 G 647 646
40 Bangladesh 306 T 647 646
41 Bangladesh 307 C 647 646
42 Bangladesh 308 C 647 646
43 Bangladesh 309 A 647 646
44 Bangladesh 310 A 647 646
45 Bangladesh 311 C 647 646
46 Bangladesh 312 T 647 646
47 Bangladesh 313 C 647 647
48 Bangladesh 314 A 647 647
49 Bangladesh 315 G 647 647
50 Bangladesh 316 T 647 647
51 Bangladesh 317 T 647 647
52 Bangladesh 318 T 647 647
53 Bangladesh 319 G 647 647
54 Bangladesh 320 C 648 648
55 Bangladesh 321 C 657 657
56 Bangladesh 322 T 657 657
57 Bangladesh 323 G 658 658
58 Bangladesh 324 T 658 658
59 Bangladesh 325 T 658 658
60 Bangladesh 326 T 658 658
61 Bangladesh 327 T 658 658
62 Bangladesh 328 A 658 658
63 Bangladesh 329 C 658 658
64 Bangladesh 330 A 658 658
65 Bangladesh 331 G 658 658
66 Bangladesh 332 G 658 658
67 Bangladesh 333 T 658 658
68 Bangladesh 334 T 658 658
69 Bangladesh 335 C T 658 647 Arg24Cys
70 Bangladesh 336 G 658 658
71 Bangladesh 337 C 658 658
72 Bangladesh 338 G 658 658
73 Bangladesh 339 A 658 658
74 Bangladesh 340 C 658 658
75 Bangladesh 341 G 658 658
76 Bangladesh 342 T 658 658
77 Bangladesh 343 G 660 660
78 Bangladesh 344 C 660 660
79 Bangladesh 345 T 660 660
80 Bangladesh 346 C 660 660
81 Bangladesh 347 G 660 660
82 Bangladesh 348 T 660 660
83 Bangladesh 349 A 660 660
84 Bangladesh 350 C 660 660
85 Bangladesh 351 G 660 660
86 Bangladesh 352 T 660 660
87 Bangladesh 353 G 660 660
88 Bangladesh 354 G 660 660
89 Bangladesh 355 C 660 660
90 Bangladesh 356 T 660 660
91 Bangladesh 357 T 660 660
92 Bangladesh 358 T 660 660
93 Bangladesh 359 G 660 660
94 Bangladesh 360 G 660 660
95 Bangladesh 361 A 660 660
96 Bangladesh 362 G 660 660
97 Bangladesh 363 A 660 660
98 Bangladesh 364 C 660 660
99 Bangladesh 365 T 660 660
100 Bangladesh 366 C 661 661
101 Bangladesh 367 C 661 661
102 Bangladesh 368 G 661 661
103 Bangladesh 369 T 661 660
104 Bangladesh 370 G 661 661
105 Bangladesh 371 G 661 661
106 Bangladesh 372 A 661 661
107 Bangladesh 373 G 661 661
108 Bangladesh 374 G 661 661
109 Bangladesh 375 A 661 661
110 Bangladesh 376 G T 661 660 Glu37Asp
111 Bangladesh 377 G 661 661
112 Bangladesh 378 T 661 661
113 Bangladesh 379 C 661 661
114 Bangladesh 380 T 661 661
115 Bangladesh 381 T 661 661
116 Bangladesh 382 A 661 661
117 Bangladesh 383 T 661 661
118 Bangladesh 384 C 661 661
119 Bangladesh 385 A 661 661
120 Bangladesh 386 G 661 661
121 Bangladesh 387 A 661 661
122 Bangladesh 388 G 661 661
123 Bangladesh 389 G 661 661
124 Bangladesh 390 C 661 661
125 Bangladesh 391 A 660 660
126 Bangladesh 392 C 660 660
127 Bangladesh 393 G 660 660
128 Bangladesh 394 T 660 660
129 Bangladesh 395 C 660 660
130 Bangladesh 396 A 660 660
131 Bangladesh 397 A 660 660
132 Bangladesh 398 C 660 660
133 Bangladesh 399 A 660 660
134 Bangladesh 400 T 660 660
135 Bangladesh 401 C 660 660
136 Bangladesh 402 T 660 660
137 Bangladesh 403 T 660 660
138 Bangladesh 404 A 660 660
139 Bangladesh 405 A 660 660
140 Bangladesh 406 A 660 660
141 Bangladesh 407 G 660 660
142 Bangladesh 408 A 660 660
143 Bangladesh 409 T 660 660
144 Bangladesh 410 G 660 660
145 Bangladesh 411 G 660 660
146 Bangladesh 412 C 660 660
147 Bangladesh 413 A 660 660
148 Bangladesh 414 C 660 660
149 Bangladesh 415 T 660 660
150 Bangladesh 416 T 660 660
151 Bangladesh 417 G 660 660
152 Bangladesh 418 T 660 659
153 Bangladesh 419 G 660 660
154 Bangladesh 420 G 660 660
155 Bangladesh 421 C T 660 657 Gly52Gly
156 Bangladesh 422 T 660 660
157 Bangladesh 423 T 660 660
158 Bangladesh 424 A 660 660
159 Bangladesh 425 G 660 660
160 Bangladesh 426 T 660 660
161 Bangladesh 427 A 660 660
162 Bangladesh 428 G 660 660
163 Bangladesh 429 A 660 660
164 Bangladesh 430 A C 660 659 Glu55Asp
165 Bangladesh 431 G 660 660
166 Bangladesh 432 T C 660 657 Val56Ala
167 Bangladesh 433 T 660 660
168 Bangladesh 434 G A 660 638 Glu57Lys
169 Bangladesh 435 A 660 660
170 Bangladesh 436 A 660 660
171 Bangladesh 437 A 660 660
172 Bangladesh 438 A 660 660
173 Bangladesh 439 A 660 657
174 Bangladesh 440 G 660 660
175 Bangladesh 441 G 660 660
176 Bangladesh 442 C 660 660
177 Bangladesh 443 G 660 660
178 Bangladesh 444 T 660 660
179 Bangladesh 445 T 660 660
180 Bangladesh 446 T 660 660
181 Bangladesh 447 T 660 660
182 Bangladesh 448 G 660 660
183 Bangladesh 449 C 660 660
184 Bangladesh 450 C 660 660
185 Bangladesh 451 T 660 660
186 Bangladesh 452 C 660 660
187 Bangladesh 453 A 660 660
188 Bangladesh 454 A 660 660
189 Bangladesh 455 C 660 660
190 Bangladesh 456 T 660 660
191 Bangladesh 457 T 660 660
192 Bangladesh 458 G 660 660
193 Bangladesh 459 A 660 660
194 Bangladesh 460 A 660 660
195 Bangladesh 461 C 660 660
196 Bangladesh 462 A 660 660
197 Bangladesh 463 G 660 660
198 Bangladesh 464 C 660 660
199 Bangladesh 465 C 660 660
200 Bangladesh 466 C T 660 657 Pro67Pro
201 Bangladesh 467 T 660 660
202 Bangladesh 468 A 660 660
203 Bangladesh 469 T 660 660
204 Bangladesh 470 G 660 660
205 Bangladesh 471 T 660 660
206 Bangladesh 472 G 660 660
207 Bangladesh 473 T 660 660
208 Bangladesh 474 T 660 659
209 Bangladesh 475 C 660 658
210 Bangladesh 476 A 660 659
211 Bangladesh 477 T 660 659
212 Bangladesh 478 C T 660 658 Ile71Ile
213 Bangladesh 479 A 660 659
214 Bangladesh 480 A 660 659
215 Bangladesh 481 A 660 659
216 Bangladesh 482 C T 660 657 Arg73Cys
217 Bangladesh 483 G 660 658
218 Bangladesh 484 T 660 659
219 Bangladesh 485 T 660 659
220 Bangladesh 486 C 660 659
221 Bangladesh 487 G T,A 660 657 Ser74Ser-p.Ser74Ser
222 Bangladesh 488 G 660 659
223 Bangladesh 489 A 660 659
224 Bangladesh 490 T 661 660
225 Bangladesh 491 G 661 660
226 Bangladesh 492 C 662 661
227 Bangladesh 493 T 662 661
228 Bangladesh 494 C 662 661
229 Bangladesh 495 G 662 661
230 Bangladesh 496 A 662 661
231 Bangladesh 497 A 662 662
232 Bangladesh 498 C 662 662
233 Bangladesh 499 T 662 662
234 Bangladesh 500 G 662 662
235 Bangladesh 501 C 662 662
236 Bangladesh 502 A 662 662
237 Bangladesh 503 C 662 662
238 Bangladesh 504 C 662 662
239 Bangladesh 505 T 661 661
240 Bangladesh 506 C 661 661
241 Bangladesh 507 A 661 661
242 Bangladesh 508 T 661 661
243 Bangladesh 509 G 661 661
244 Bangladesh 510 G 661 660
245 Bangladesh 511 T 661 660
246 Bangladesh 512 C 661 660
247 Bangladesh 513 A 661 660
248 Bangladesh 514 T 661 660
249 Bangladesh 515 G 661 660
250 Bangladesh 516 T 661 660
251 Bangladesh 517 T 661 660
252 Bangladesh 518 A 661 660
253 Bangladesh 519 T 661 660
254 Bangladesh 520 G 661 660
255 Bangladesh 521 G 661 660
256 Bangladesh 522 T 661 660
257 Bangladesh 523 T C 661 660 Val86Val
258 Bangladesh 524 G 661 661
259 Bangladesh 525 A 661 661
260 Bangladesh 526 G 661 661
261 Bangladesh 527 C T 661 658 Leu88Leu
262 Bangladesh 528 T 661 661
263 Bangladesh 529 G 661 661
264 Bangladesh 530 G 661 661
265 Bangladesh 531 T 661 661
266 Bangladesh 532 A 662 662
267 Bangladesh 533 G 662 662
268 Bangladesh 534 C 662 661
269 Bangladesh 535 A 662 662
270 Bangladesh 536 G 662 662
271 Bangladesh 537 A 662 662
272 Bangladesh 538 A 662 659
273 Bangladesh 539 C 662 662
274 Bangladesh 540 T 662 662
275 Bangladesh 541 C 662 662
276 Bangladesh 542 G 662 662
277 Bangladesh 543 A 662 662
278 Bangladesh 544 A 662 662
279 Bangladesh 545 G 662 662
280 Bangladesh 546 G 662 662
281 Bangladesh 547 C 662 662
282 Bangladesh 548 A 662 662
283 Bangladesh 549 T 662 662
284 Bangladesh 550 T 662 662
285 Bangladesh 551 C 662 662
286 Bangladesh 552 A 662 662
287 Bangladesh 553 G 662 662
288 Bangladesh 554 T 662 662
289 Bangladesh 555 A 662 662
290 Bangladesh 556 C 662 662
291 Bangladesh 557 G 662 662
292 Bangladesh 558 G 662 662
293 Bangladesh 559 T 662 662
294 Bangladesh 560 C 662 662
295 Bangladesh 561 G 662 662
296 Bangladesh 562 T 662 662
297 Bangladesh 563 A 662 662
298 Bangladesh 564 G 662 662
299 Bangladesh 565 T 663 663
300 Bangladesh 566 G 663 663
301 Bangladesh 567 G 663 663
302 Bangladesh 568 T 662 662
303 Bangladesh 569 G 662 661
304 Bangladesh 570 A 662 661
305 Bangladesh 571 G 662 661
306 Bangladesh 572 A 662 661
307 Bangladesh 573 C 662 661
308 Bangladesh 574 A 662 661
309 Bangladesh 575 C 662 661
310 Bangladesh 576 T 662 660
311 Bangladesh 577 T 662 660
312 Bangladesh 578 G 662 660
313 Bangladesh 579 G 662 660
314 Bangladesh 580 T 662 659
315 Bangladesh 581 G 662 659
316 Bangladesh 582 T 662 660
317 Bangladesh 583 C T 662 657 Val106Val
318 Bangladesh 584 C 662 660
319 Bangladesh 585 T 662 660
320 Bangladesh 586 T 662 660
321 Bangladesh 587 G 662 660
322 Bangladesh 588 T 662 661
323 Bangladesh 589 C 662 661
324 Bangladesh 590 C 662 661
325 Bangladesh 591 C 662 661
326 Bangladesh 592 T 662 661
327 Bangladesh 593 C 662 661
328 Bangladesh 594 A G 662 659 His110Arg
329 Bangladesh 595 T 662 661
330 Bangladesh 596 G 662 661
331 Bangladesh 597 T 662 661
332 Bangladesh 598 G 662 661
333 Bangladesh 599 G 662 661
334 Bangladesh 600 G 662 661
335 Bangladesh 601 C T 662 659 Gly112Gly
336 Bangladesh 602 G 662 661
337 Bangladesh 603 A 662 661
338 Bangladesh 604 A 662 661
339 Bangladesh 605 A 662 661
340 Bangladesh 606 T 662 661
341 Bangladesh 607 A 662 661
342 Bangladesh 608 C 662 661
343 Bangladesh 609 C 662 661
344 Bangladesh 610 A 662 661
345 Bangladesh 611 G 662 661
346 Bangladesh 612 T 662 661
347 Bangladesh 613 G 662 661
348 Bangladesh 614 G T 662 660 Ala117Ser
349 Bangladesh 615 C 662 661
350 Bangladesh 616 T 662 661
351 Bangladesh 617 T 662 661
352 Bangladesh 618 A 662 661
353 Bangladesh 619 C 662 662
354 Bangladesh 620 C 662 662
355 Bangladesh 621 G 662 662
356 Bangladesh 622 C 662 662
357 Bangladesh 623 A 662 662
358 Bangladesh 624 A 662 662
359 Bangladesh 625 G T 662 661 Lys120Asn
360 Bangladesh 626 G A 662 661 Val121Ile
361 Bangladesh 627 T A 662 661 Val121Asp
362 Bangladesh 628 T 662 662
363 Bangladesh 629 C A 662 661 Leu122Ile
364 Bangladesh 630 T 662 662
365 Bangladesh 631 T 662 662
366 Bangladesh 632 C 662 662
367 Bangladesh 633 T 662 662
368 Bangladesh 634 T 662 662
369 Bangladesh 635 C 662 662
370 Bangladesh 636 G 662 662
371 Bangladesh 637 T 662 662
372 Bangladesh 638 A 662 662
373 Bangladesh 639 A 662 662
374 Bangladesh 640 G 662 662
375 Bangladesh 641 A 663 663
376 Bangladesh 642 A 663 663
377 Bangladesh 643 C T 665 664 Asn126Asn
378 Bangladesh 644 G 665 665
379 Bangladesh 645 G 665 665
380 Bangladesh 646 T 665 665
381 Bangladesh 647 A 665 665
382 Bangladesh 648 A 665 665
383 Bangladesh 649 T 665 665
384 Bangladesh 650 A 665 665
385 Bangladesh 651 A 665 665
386 Bangladesh 652 A 666 666
387 Bangladesh 653 G 666 666
388 Bangladesh 654 G 666 666
389 Bangladesh 655 A 666 666
390 Bangladesh 656 G 666 666
391 Bangladesh 657 C 666 666
392 Bangladesh 658 T 666 666
393 Bangladesh 659 G 666 666
394 Bangladesh 660 G 666 666
395 Bangladesh 661 T 666 666
396 Bangladesh 662 G 666 666
397 Bangladesh 663 G 666 666
398 Bangladesh 664 C T 666 665 Gly133Gly
399 Bangladesh 665 C 674 674
400 Bangladesh 666 A 674 674
401 Bangladesh 667 T 674 674
402 Bangladesh 668 A 675 675
403 Bangladesh 669 G 675 675
404 Bangladesh 670 T 675 675
405 Bangladesh 671 T 674 674
406 Bangladesh 672 A 674 674
407 Bangladesh 673 C 674 674
408 Bangladesh 674 G 674 674
409 Bangladesh 675 G 674 674
410 Bangladesh 676 C T 674 673 Gly137Gly
411 Bangladesh 677 G 674 674
412 Bangladesh 678 C T 674 673 Ala138Val
413 Bangladesh 679 C 674 674
414 Bangladesh 680 G 674 674
415 Bangladesh 681 A 674 674
416 Bangladesh 682 T 674 674
417 Bangladesh 683 C T 674 663 Leu140Leu
418 Bangladesh 684 T 674 674
419 Bangladesh 685 A 674 674
420 Bangladesh 686 A 674 673
421 Bangladesh 687 A 674 673
422 Bangladesh 688 G 674 673
423 Bangladesh 689 T 674 673
424 Bangladesh 690 C 674 673
425 Bangladesh 691 A 674 673
426 Bangladesh 692 T 674 673
427 Bangladesh 693 T 674 673
428 Bangladesh 694 T 674 673
429 Bangladesh 695 G 674 674
430 Bangladesh 696 A 674 674
431 Bangladesh 697 C 674 674
432 Bangladesh 698 T 674 674
433 Bangladesh 699 T 674 674
434 Bangladesh 700 A 674 674
435 Bangladesh 701 G 674 674
436 Bangladesh 702 G 674 674
437 Bangladesh 703 C 674 674
438 Bangladesh 704 G 674 674
439 Bangladesh 705 A 673 673
440 Bangladesh 706 C T 673 672 Asp147Asp
441 Bangladesh 707 G 673 673
442 Bangladesh 708 A 673 673
443 Bangladesh 709 G 673 673
444 Bangladesh 710 C 673 673
445 Bangladesh 711 T 673 673
446 Bangladesh 712 T A 673 671 Leu149Leu
447 Bangladesh 713 G 673 673
448 Bangladesh 714 G A 673 672 Gly150Asp
449 Bangladesh 715 C 673 673
450 Bangladesh 716 A 673 673
451 Bangladesh 717 C 673 673
452 Bangladesh 718 T 673 673
453 Bangladesh 719 G 673 673
454 Bangladesh 720 A 673 673
455 Bangladesh 721 T 673 673
456 Bangladesh 722 C 673 673
457 Bangladesh 723 C 673 673
458 Bangladesh 724 T 673 672
459 Bangladesh 725 T 673 672
460 Bangladesh 726 A 673 672
461 Bangladesh 727 T 673 672
462 Bangladesh 728 G 673 672
463 Bangladesh 729 A 673 672
464 Bangladesh 730 A 673 672
465 Bangladesh 731 G 673 672
466 Bangladesh 732 A 673 672
467 Bangladesh 733 T 673 672
468 Bangladesh 734 T 673 672
469 Bangladesh 735 T 673 672
470 Bangladesh 736 T 673 672
471 Bangladesh 737 C 673 672
472 Bangladesh 738 A 673 672
473 Bangladesh 739 A 673 672
474 Bangladesh 740 G 673 672
475 Bangladesh 741 A 673 672
476 Bangladesh 742 A 673 672
477 Bangladesh 743 A 673 672
478 Bangladesh 744 A 673 672
479 Bangladesh 745 C 673 672
480 Bangladesh 746 T 673 672
481 Bangladesh 747 G 673 672
482 Bangladesh 748 G 673 672
483 Bangladesh 749 A 673 672
484 Bangladesh 750 A 673 672
485 Bangladesh 751 C T 673 669 Asn162Asn
486 Bangladesh 752 A 673 672
487 Bangladesh 753 C 673 672
488 Bangladesh 754 T 673 672
489 Bangladesh 755 A 673 672
490 Bangladesh 756 A 673 672
491 Bangladesh 757 A 673 672
492 Bangladesh 758 C 673 672
493 Bangladesh 759 A 673 672
494 Bangladesh 760 T 673 672
495 Bangladesh 761 A 673 672
496 Bangladesh 762 G 673 673
497 Bangladesh 763 C 673 673
498 Bangladesh 764 A 673 673
499 Bangladesh 765 G 673 673
500 Bangladesh 766 T 673 673
501 Bangladesh 767 G 673 673
502 Bangladesh 768 G 673 673
503 Bangladesh 769 T 673 673
504 Bangladesh 770 G 673 673
505 Bangladesh 771 T 673 673
506 Bangladesh 772 T 673 673
507 Bangladesh 773 A 673 673
508 Bangladesh 774 C T 673 670 Thr170Ile
509 Bangladesh 775 C 673 673
510 Bangladesh 776 C 673 673
511 Bangladesh 777 G 673 673
512 Bangladesh 778 T 673 673
513 Bangladesh 779 G 673 673
514 Bangladesh 780 A 673 673
515 Bangladesh 781 A 673 673
516 Bangladesh 782 C 673 673
517 Bangladesh 783 T 673 673
518 Bangladesh 784 C 673 673
519 Bangladesh 785 A 673 673
520 Bangladesh 786 T 673 673
521 Bangladesh 787 G 673 673
522 Bangladesh 788 C 673 673
523 Bangladesh 789 G 673 673
524 Bangladesh 790 T 673 673
525 Bangladesh 791 G 673 672
526 Bangladesh 792 A 673 673
527 Bangladesh 793 G 673 673
528 Bangladesh 794 C 673 673
529 Bangladesh 795 T 673 673
530 Bangladesh 796 T 673 673
531 Bangladesh 797 A 673 673
532 Bangladesh 798 A 673 673
533 Bangladesh 799 C 673 673
534 Bangladesh 800 G 673 673
535 Bangladesh 801 G 673 673
536 Bangladesh 802 A 673 673
537 Bangladesh 803 G 673 673
538 Bangladesh 804 G 673 673
539 Bangladesh 805 G 673 673