National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   540                                        
?                                            
A   21 1                                 1    
C   3                                        
D   27     1                                  
E   54       1                                
F   15                                        
G   66           2                            
H   21             1                         1
I   9                                   1    
K   27                       1                
L   63                   2                    
M   9                                        
N   18                       2                
P   24                         2              
Q   21                             1          
R   30                             2          
S   30           1                   2        
T   21               1                        
V   63               1   1               4    
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Austria 266 A 1333 1333
1 Austria 267 T 1333 1333
2 Austria 268 G 1333 1333
3 Austria 269 G 1333 1333
4 Austria 270 A 1333 1333
5 Austria 271 G 1333 1333
6 Austria 272 A 1333 1333
7 Austria 273 G 1333 1333
8 Austria 274 C T 1333 1332 Ser3Ser
9 Austria 275 C 1333 1333
10 Austria 276 T 1333 1333
11 Austria 277 T 1333 1333
12 Austria 278 G 1333 1333
13 Austria 279 T 1333 1333
14 Austria 280 C 1333 1333
15 Austria 281 C 1333 1333
16 Austria 282 C 1333 1333
17 Austria 283 T 1333 1333
18 Austria 284 G 1333 1333
19 Austria 285 G 1333 1332
20 Austria 286 T 1333 1333
21 Austria 287 T 1333 1333
22 Austria 288 T 1333 1333
23 Austria 289 C 1333 1333
24 Austria 290 A 1333 1333
25 Austria 291 A 1333 1333
26 Austria 292 C 1333 1333
27 Austria 293 G 1333 1333
28 Austria 294 A 1333 1333
29 Austria 295 G 1333 1333
30 Austria 296 A 1333 1333
31 Austria 297 A 1333 1333
32 Austria 298 A 1333 1333
33 Austria 299 A 1333 1333
34 Austria 300 C 1333 1333
35 Austria 301 A 1333 1333
36 Austria 302 C 1333 1333
37 Austria 303 A 1333 1333
38 Austria 304 C 1333 1333
39 Austria 305 G 1333 1333
40 Austria 306 T 1333 1333
41 Austria 307 C 1333 1333
42 Austria 308 C 1333 1333
43 Austria 309 A G 1333 1332 Gln15Arg
44 Austria 310 A 1333 1333
45 Austria 311 C 1333 1333
46 Austria 312 T 1333 1333
47 Austria 313 C T 1333 1326 Leu16Leu
48 Austria 314 A 1333 1333
49 Austria 315 G 1333 1333
50 Austria 316 T 1333 1333
51 Austria 317 T 1333 1333
52 Austria 318 T 1333 1333
53 Austria 319 G 1333 1333
54 Austria 320 C 1333 1332
55 Austria 321 C 1333 1332
56 Austria 322 T 1333 1332
57 Austria 323 G 1333 1332
58 Austria 324 T 1333 1332
59 Austria 325 T 1333 1332
60 Austria 326 T 1333 1332
61 Austria 327 T 1333 1332
62 Austria 328 A 1333 1332
63 Austria 329 C 1333 1332
64 Austria 330 A 1333 1332
65 Austria 331 G 1333 1332
66 Austria 332 G 1333 1332
67 Austria 333 T 1333 1332
68 Austria 334 T 1333 1332
69 Austria 335 C 1333 1332
70 Austria 336 G 1333 1332
71 Austria 337 C T 1333 1324 Arg24Arg
72 Austria 338 G 1333 1332
73 Austria 339 A 1333 1332
74 Austria 340 C 1333 1332
75 Austria 341 G 1333 1332
76 Austria 342 T 1333 1332
77 Austria 343 G 1342 1342
78 Austria 344 C 1342 1342
79 Austria 345 T 1342 1342
80 Austria 346 C 1342 1341
81 Austria 347 G 1342 1342
82 Austria 348 T 1342 1342
83 Austria 349 A 1342 1342
84 Austria 350 C 1342 1342
85 Austria 351 G 1342 1342
86 Austria 352 T 1342 1342
87 Austria 353 G 1342 1342
88 Austria 354 G 1342 1342
89 Austria 355 C 1342 1342
90 Austria 356 T 1342 1342
91 Austria 357 T 1342 1342
92 Austria 358 T 1342 1342
93 Austria 359 G 1342 1342
94 Austria 360 G 1342 1342
95 Austria 361 A 1342 1342
96 Austria 362 G 1342 1342
97 Austria 363 A 1342 1342
98 Austria 364 C 1342 1342
99 Austria 365 T 1342 1342
100 Austria 366 C 1342 1342
101 Austria 367 C 1342 1342
102 Austria 368 G 1342 1342
103 Austria 369 T 1342 1342
104 Austria 370 G 1342 1342
105 Austria 371 G 1342 1342
106 Austria 372 A 1342 1342
107 Austria 373 G 1342 1342
108 Austria 374 G 1342 1342
109 Austria 375 A 1342 1342
110 Austria 376 G 1342 1342
111 Austria 377 G 1342 1342
112 Austria 378 T 1342 1342
113 Austria 379 C 1342 1342
114 Austria 380 T 1342 1342
115 Austria 381 T 1342 1342
116 Austria 382 A 1342 1342
117 Austria 383 T 1342 1342
118 Austria 384 C 1342 1342
119 Austria 385 A 1342 1342
120 Austria 386 G 1341 1341
121 Austria 387 A 1341 1341
122 Austria 388 G 1341 1341
123 Austria 389 G 1341 1341
124 Austria 390 C 1341 1341
125 Austria 391 A 1341 1341
126 Austria 392 C 1341 1341
127 Austria 393 G 1341 1341
128 Austria 394 T 1341 1341
129 Austria 395 C 1341 1341
130 Austria 396 A 1341 1341
131 Austria 397 A 1341 1341
132 Austria 398 C 1341 1341
133 Austria 399 A 1341 1341
134 Austria 400 T 1341 1341
135 Austria 401 C 1341 1341
136 Austria 402 T 1341 1341
137 Austria 403 T 1341 1341
138 Austria 404 A 1341 1341
139 Austria 405 A 1341 1341
140 Austria 406 A 1341 1341
141 Austria 407 G 1341 1341
142 Austria 408 A 1341 1341
143 Austria 409 T 1341 1341
144 Austria 410 G 1341 1341
145 Austria 411 G 1341 1341
146 Austria 412 C 1341 1341
147 Austria 413 A 1341 1341
148 Austria 414 C 1341 1341
149 Austria 415 T 1341 1341
150 Austria 416 T 1341 1341
151 Austria 417 G 1341 1341
152 Austria 418 T 1341 1341
153 Austria 419 G 1341 1341
154 Austria 420 G 1341 1341
155 Austria 421 C 1341 1341
156 Austria 422 T 1341 1341
157 Austria 423 T 1341 1341
158 Austria 424 A 1341 1341
159 Austria 425 G 1341 1341
160 Austria 426 T 1341 1341
161 Austria 427 A 1341 1341
162 Austria 428 G 1341 1341
163 Austria 429 A 1341 1341
164 Austria 430 A 1341 1341
165 Austria 431 G 1341 1341
166 Austria 432 T 1341 1341
167 Austria 433 T 1341 1341
168 Austria 434 G 1341 1341
169 Austria 435 A 1341 1341
170 Austria 436 A 1341 1341
171 Austria 437 A 1341 1341
172 Austria 438 A 1341 1341
173 Austria 439 A 1341 1341
174 Austria 440 G 1341 1341
175 Austria 441 G 1341 1341
176 Austria 442 C 1341 1341
177 Austria 443 G A 1341 1340 Val60Ile
178 Austria 444 T 1341 1341
179 Austria 445 T C 1341 1268 Val60Val
180 Austria 446 T 1341 1341
181 Austria 447 T 1341 1341
182 Austria 448 G 1341 1341
183 Austria 449 C 1341 1341
184 Austria 450 C 1341 1341
185 Austria 451 T 1341 1341
186 Austria 452 C 1341 1341
187 Austria 453 A 1341 1341
188 Austria 454 A 1341 1341
189 Austria 455 C 1341 1341
190 Austria 456 T 1341 1341
191 Austria 457 T 1341 1341
192 Austria 458 G 1341 1341
193 Austria 459 A 1341 1341
194 Austria 460 A 1341 1341
195 Austria 461 C 1341 1341
196 Austria 462 A 1341 1341
197 Austria 463 G 1341 1341
198 Austria 464 C 1341 1341
199 Austria 465 C 1341 1341
200 Austria 466 C T 1341 1339 Pro67Pro
201 Austria 467 T 1341 1341
202 Austria 468 A 1341 1341
203 Austria 469 T 1341 1341
204 Austria 470 G 1341 1341
205 Austria 471 T 1341 1341
206 Austria 472 G 1341 1341
207 Austria 473 T 1341 1341
208 Austria 474 T 1341 1341
209 Austria 475 C 1341 1341
210 Austria 476 A G 1341 1338 Ile71Val
211 Austria 477 T 1341 1341
212 Austria 478 C 1341 1340
213 Austria 479 A 1341 1341
214 Austria 480 A 1341 1341
215 Austria 481 A 1341 1341
216 Austria 482 C 1341 1341
217 Austria 483 G 1341 1341
218 Austria 484 T 1341 1341
219 Austria 485 T 1341 1341
220 Austria 486 C 1341 1341
221 Austria 487 G T 1341 1340 Ser74Ser
222 Austria 488 G 1341 1341
223 Austria 489 A 1341 1341
224 Austria 490 T 1341 1341
225 Austria 491 G 1341 1341
226 Austria 492 C 1341 1341
227 Austria 493 T 1341 1341
228 Austria 494 C 1341 1341
229 Austria 495 G 1341 1341
230 Austria 496 A 1341 1341
231 Austria 497 A 1341 1341
232 Austria 498 C 1341 1341
233 Austria 499 T 1341 1341
234 Austria 500 G 1341 1341
235 Austria 501 C 1341 1341
236 Austria 502 A 1341 1341
237 Austria 503 C 1341 1341
238 Austria 504 C 1341 1341
239 Austria 505 T 1339 1339
240 Austria 506 C 1339 1339
241 Austria 507 A 1339 1339
242 Austria 508 T 1339 1339
243 Austria 509 G 1339 1339
244 Austria 510 G 1339 1339
245 Austria 511 T 1339 1338
246 Austria 512 C 1339 1337
247 Austria 513 A 1339 1338
248 Austria 514 T C 1339 1332 His83His
249 Austria 515 G 1339 1338
250 Austria 516 T 1339 1338
251 Austria 517 T C 1339 1336 Val84Val
252 Austria 518 A 1339 1338
253 Austria 519 T 1339 1339
254 Austria 520 G 1339 1339
255 Austria 521 G 1339 1337
256 Austria 522 T 1339 1339
257 Austria 523 T 1339 1339
258 Austria 524 G 1339 1339
259 Austria 525 A 1339 1339
260 Austria 526 G 1339 1339
261 Austria 527 C T 1339 1335 Leu88Leu
262 Austria 528 T 1339 1339
263 Austria 529 G 1339 1339
264 Austria 530 G 1339 1339
265 Austria 531 T 1339 1339
266 Austria 532 A 1339 1339
267 Austria 533 G 1339 1339
268 Austria 534 C T 1339 1338 Ala90Val
269 Austria 535 A 1339 1339
270 Austria 536 G 1339 1339
271 Austria 537 A 1339 1339
272 Austria 538 A 1339 1339
273 Austria 539 C 1339 1339
274 Austria 540 T 1339 1339
275 Austria 541 C 1339 1339
276 Austria 542 G 1339 1339
277 Austria 543 A 1339 1339
278 Austria 544 A 1339 1339
279 Austria 545 G 1339 1339
280 Austria 546 G 1339 1339
281 Austria 547 C 1339 1339
282 Austria 548 A 1339 1339
283 Austria 549 T 1339 1339
284 Austria 550 T 1339 1339
285 Austria 551 C 1339 1339
286 Austria 552 A 1339 1339
287 Austria 553 G 1339 1339
288 Austria 554 T 1339 1339
289 Austria 555 A 1339 1339
290 Austria 556 C 1339 1339
291 Austria 557 G 1339 1339
292 Austria 558 G 1339 1338
293 Austria 559 T C 1339 1338 Gly98Gly
294 Austria 560 C 1339 1339
295 Austria 561 G 1339 1339
296 Austria 562 T 1339 1339
297 Austria 563 A 1339 1339
298 Austria 564 G 1339 1339
299 Austria 565 T 1341 1341
300 Austria 566 G 1341 1341
301 Austria 567 G 1341 1341
302 Austria 568 T 1341 1341
303 Austria 569 G 1341 1341
304 Austria 570 A 1341 1341
305 Austria 571 G A 1341 1328 Glu102Glu
306 Austria 572 A 1341 1341
307 Austria 573 C 1341 1341
308 Austria 574 A 1341 1341
309 Austria 575 C 1341 1341
310 Austria 576 T 1341 1341
311 Austria 577 T 1341 1341
312 Austria 578 G 1341 1341
313 Austria 579 G 1341 1341
314 Austria 580 T 1341 1341
315 Austria 581 G 1341 1341
316 Austria 582 T 1341 1341
317 Austria 583 C 1341 1341
318 Austria 584 C 1341 1341
319 Austria 585 T 1341 1341
320 Austria 586 T 1341 1341
321 Austria 587 G 1341 1341
322 Austria 588 T 1341 1341
323 Austria 589 C 1341 1341
324 Austria 590 C 1341 1341
325 Austria 591 C 1341 1341
326 Austria 592 T 1341 1341
327 Austria 593 C T 1341 1340 His110Tyr
328 Austria 594 A 1341 1341
329 Austria 595 T 1341 1341
330 Austria 596 G C 1341 1340 Val111Leu
331 Austria 597 T 1341 1341
332 Austria 598 G 1341 1341
333 Austria 599 G 1341 1341
334 Austria 600 G 1341 1341
335 Austria 601 C 1341 1341
336 Austria 602 G 1341 1341
337 Austria 603 A 1341 1341
338 Austria 604 A 1341 1341
339 Austria 605 A 1341 1341
340 Austria 606 T 1341 1341
341 Austria 607 A 1341 1341
342 Austria 608 C 1341 1341
343 Austria 609 C 1341 1341
344 Austria 610 A G 1341 1339 Pro115Pro
345 Austria 611 G 1341 1341
346 Austria 612 T 1341 1341
347 Austria 613 G A 1341 1339 Val116Val
348 Austria 614 G 1341 1341
349 Austria 615 C 1341 1341
350 Austria 616 T 1341 1341
351 Austria 617 T 1341 1341
352 Austria 618 A 1341 1341
353 Austria 619 C 1341 1341
354 Austria 620 C 1341 1341
355 Austria 621 G 1341 1341
356 Austria 622 C T 1341 1340 Arg119Arg
357 Austria 623 A 1341 1341
358 Austria 624 A 1341 1341
359 Austria 625 G 1341 1341
360 Austria 626 G 1340 1340
361 Austria 627 T 1340 1340
362 Austria 628 T 1340 1340
363 Austria 629 C 1340 1340
364 Austria 630 T 1340 1340
365 Austria 631 T 1340 1340
366 Austria 632 C 1340 1340
367 Austria 633 T 1340 1340
368 Austria 634 T 1340 1340
369 Austria 635 C 1340 1337
370 Austria 636 G 1340 1339
371 Austria 637 T 1340 1340
372 Austria 638 A 1340 1340
373 Austria 639 A 1340 1340
374 Austria 640 G 1340 1340
375 Austria 641 A 1340 1340
376 Austria 642 A 1340 1340
377 Austria 643 C T 1340 1339 Asn126Asn
378 Austria 644 G 1340 1340
379 Austria 645 G 1340 1340
380 Austria 646 T 1340 1340
381 Austria 647 A 1340 1340
382 Austria 648 A 1340 1340
383 Austria 649 T 1340 1340
384 Austria 650 A 1340 1340
385 Austria 651 A 1340 1340
386 Austria 652 A 1340 1340
387 Austria 653 G 1340 1340
388 Austria 654 G 1340 1340
389 Austria 655 A 1340 1340
390 Austria 656 G 1340 1339
391 Austria 657 C 1340 1340
392 Austria 658 T C 1340 1337 Ala131Ala
393 Austria 659 G 1340 1340
394 Austria 660 G 1340 1340
395 Austria 661 T 1340 1340
396 Austria 662 G 1340 1340
397 Austria 663 G 1340 1340
398 Austria 664 C 1340 1340
399 Austria 665 C 1342 1342
400 Austria 666 A 1342 1342
401 Austria 667 T 1342 1342
402 Austria 668 A 1342 1342
403 Austria 669 G 1342 1342
404 Austria 670 T 1342 1342
405 Austria 671 T 1342 1342
406 Austria 672 A 1342 1342
407 Austria 673 C 1342 1342
408 Austria 674 G 1342 1342
409 Austria 675 G 1342 1342
410 Austria 676 C 1342 1342
411 Austria 677 G 1342 1342
412 Austria 678 C 1342 1342
413 Austria 679 C 1342 1342
414 Austria 680 G 1342 1342
415 Austria 681 A 1342 1342
416 Austria 682 T 1342 1342
417 Austria 683 C 1342 1340
418 Austria 684 T 1342 1342
419 Austria 685 A 1342 1342
420 Austria 686 A 1340 1340
421 Austria 687 A 1340 1340
422 Austria 688 G T 1340 1338 Lys141Asn
423 Austria 689 T 1340 1340
424 Austria 690 C 1340 1340
425 Austria 691 A 1340 1340
426 Austria 692 T 1340 1340
427 Austria 693 T 1340 1340
428 Austria 694 T 1340 1340
429 Austria 695 G 1340 1340
430 Austria 696 A 1340 1340
431 Austria 697 C 1340 1340
432 Austria 698 T 1340 1340
433 Austria 699 T 1340 1340
434 Austria 700 A 1340 1340
435 Austria 701 G 1340 1340
436 Austria 702 G 1340 1340
437 Austria 703 C 1340 1340
438 Austria 704 G 1340 1340
439 Austria 705 A 1336 1336
440 Austria 706 C T 1336 1334 Asp147Asp
441 Austria 707 G 1336 1336
442 Austria 708 A 1336 1336
443 Austria 709 G 1336 1336
444 Austria 710 C 1336 1336
445 Austria 711 T 1336 1336
446 Austria 712 T 1336 1336
447 Austria 713 G 1336 1336
448 Austria 714 G 1336 1336
449 Austria 715 C T 1336 1335 Gly150Gly
450 Austria 716 A 1336 1336
451 Austria 717 C 1336 1336
452 Austria 718 T 1336 1336
453 Austria 719 G 1336 1336
454 Austria 720 A 1336 1336
455 Austria 721 T 1336 1336
456 Austria 722 C 1336 1336
457 Austria 723 C 1336 1336
458 Austria 724 T 1336 1336
459 Austria 725 T 1336 1336
460 Austria 726 A 1336 1336
461 Austria 727 T 1336 1336
462 Austria 728 G 1336 1336
463 Austria 729 A 1336 1336
464 Austria 730 A 1336 1336
465 Austria 731 G 1336 1336
466 Austria 732 A 1336 1336
467 Austria 733 T 1336 1336
468 Austria 734 T 1336 1336
469 Austria 735 T 1336 1336
470 Austria 736 T 1336 1336
471 Austria 737 C 1336 1336
472 Austria 738 A 1336 1336
473 Austria 739 A 1336 1336
474 Austria 740 G 1336 1336
475 Austria 741 A 1336 1336
476 Austria 742 A 1336 1336
477 Austria 743 A 1336 1336
478 Austria 744 A 1336 1336
479 Austria 745 C T 1336 1335 Asn160Asn
480 Austria 746 T 1339 1339
481 Austria 747 G 1339 1339
482 Austria 748 G 1339 1339
483 Austria 749 A 1339 1339
484 Austria 750 A 1339 1339
485 Austria 751 C 1339 1339
486 Austria 752 A 1339 1339
487 Austria 753 C 1339 1339
488 Austria 754 T 1339 1339
489 Austria 755 A 1339 1339
490 Austria 756 A 1339 1339
491 Austria 757 A 1339 1339
492 Austria 758 C 1339 1339
493 Austria 759 A 1339 1339
494 Austria 760 T 1339 1339
495 Austria 761 A G 1339 1338 Ser166Gly
496 Austria 762 G 1339 1339
497 Austria 763 C 1339 1339
498 Austria 764 A 1339 1339
499 Austria 765 G 1339 1339
500 Austria 766 T 1339 1339
501 Austria 767 G 1339 1339
502 Austria 768 G 1339 1339
503 Austria 769 T 1339 1339
504 Austria 770 G 1339 1339
505 Austria 771 T 1339 1339
506 Austria 772 T C 1339 1335 Val169Val
507 Austria 773 A 1339 1339
508 Austria 774 C T 1339 1338 Thr170Ile
509 Austria 775 C 1339 1339
510 Austria 776 C 1339 1339
511 Austria 777 G 1339 1339
512 Austria 778 T 1339 1339
513 Austria 779 G 1339 1339
514 Austria 780 A 1339 1339
515 Austria 781 A 1339 1339
516 Austria 782 C 1339 1339
517 Austria 783 T 1339 1339
518 Austria 784 C 1339 1339
519 Austria 785 A 1339 1339
520 Austria 786 T 1339 1339
521 Austria 787 G 1339 1339
522 Austria 788 C 1339 1339
523 Austria 789 G 1339 1339
524 Austria 790 T 1339 1339
525 Austria 791 G 1339 1339
526 Austria 792 A 1339 1339
527 Austria 793 G 1339 1339
528 Austria 794 C 1339 1339
529 Austria 795 T 1339 1339
530 Austria 796 T 1339 1339
531 Austria 797 A 1339 1339
532 Austria 798 A 1339 1338
533 Austria 799 C 1339 1339
534 Austria 800 G 1339 1339
535 Austria 801 G 1339 1339
536 Austria 802 A 1339 1339
537 Austria 803 G 1339 1339
538 Austria 804 G 1339 1339
539 Austria 805 G 1339 1339