National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   540                                        
?                                            
A   21                                        
C   3                                        
D   27                                        
E   54                                        
F   15                                        
G   66                                        
H   21                                        
I   9                                        
K   27                                        
L   63                                        
M   9                                        
N   18                                        
P   24                                        
Q   21                                        
R   30                                        
S   30                                        
T   21                                        
V   63                                        
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Aruba 266 A 11 11
1 Aruba 267 T 11 11
2 Aruba 268 G 11 11
3 Aruba 269 G 11 11
4 Aruba 270 A 11 11
5 Aruba 271 G 11 11
6 Aruba 272 A 11 11
7 Aruba 273 G 11 11
8 Aruba 274 C 11 11
9 Aruba 275 C 11 11
10 Aruba 276 T 11 11
11 Aruba 277 T 11 11
12 Aruba 278 G 11 11
13 Aruba 279 T 11 11
14 Aruba 280 C 11 11
15 Aruba 281 C 11 11
16 Aruba 282 C 11 11
17 Aruba 283 T 11 11
18 Aruba 284 G 11 11
19 Aruba 285 G 11 11
20 Aruba 286 T 11 11
21 Aruba 287 T 11 11
22 Aruba 288 T 11 11
23 Aruba 289 C 11 11
24 Aruba 290 A 11 11
25 Aruba 291 A 11 11
26 Aruba 292 C 11 11
27 Aruba 293 G 11 11
28 Aruba 294 A 11 11
29 Aruba 295 G 11 11
30 Aruba 296 A 11 11
31 Aruba 297 A 11 11
32 Aruba 298 A 11 11
33 Aruba 299 A 11 11
34 Aruba 300 C 11 11
35 Aruba 301 A 11 11
36 Aruba 302 C 11 11
37 Aruba 303 A 11 11
38 Aruba 304 C 11 11
39 Aruba 305 G 11 11
40 Aruba 306 T 11 11
41 Aruba 307 C 11 11
42 Aruba 308 C 11 11
43 Aruba 309 A 11 11
44 Aruba 310 A 11 11
45 Aruba 311 C 11 11
46 Aruba 312 T 11 11
47 Aruba 313 C 11 11
48 Aruba 314 A 11 11
49 Aruba 315 G 11 11
50 Aruba 316 T 11 11
51 Aruba 317 T 11 11
52 Aruba 318 T 11 11
53 Aruba 319 G 11 11
54 Aruba 320 C 11 11
55 Aruba 321 C 11 11
56 Aruba 322 T 11 11
57 Aruba 323 G 11 11
58 Aruba 324 T 11 11
59 Aruba 325 T 11 11
60 Aruba 326 T 11 11
61 Aruba 327 T 11 11
62 Aruba 328 A 11 11
63 Aruba 329 C 11 11
64 Aruba 330 A 11 11
65 Aruba 331 G 11 11
66 Aruba 332 G 11 11
67 Aruba 333 T 11 11
68 Aruba 334 T 11 11
69 Aruba 335 C 11 11
70 Aruba 336 G 11 11
71 Aruba 337 C 11 11
72 Aruba 338 G 11 11
73 Aruba 339 A 11 11
74 Aruba 340 C 11 11
75 Aruba 341 G 11 11
76 Aruba 342 T 11 11
77 Aruba 343 G 11 11
78 Aruba 344 C 11 11
79 Aruba 345 T 11 11
80 Aruba 346 C 11 11
81 Aruba 347 G 11 11
82 Aruba 348 T 11 11
83 Aruba 349 A 11 11
84 Aruba 350 C 11 11
85 Aruba 351 G 11 11
86 Aruba 352 T 11 11
87 Aruba 353 G 11 11
88 Aruba 354 G 11 11
89 Aruba 355 C 11 11
90 Aruba 356 T 11 11
91 Aruba 357 T 11 11
92 Aruba 358 T 11 11
93 Aruba 359 G 11 11
94 Aruba 360 G 11 11
95 Aruba 361 A 11 11
96 Aruba 362 G 11 11
97 Aruba 363 A 11 11
98 Aruba 364 C 11 11
99 Aruba 365 T 11 11
100 Aruba 366 C 11 11
101 Aruba 367 C 11 11
102 Aruba 368 G 11 11
103 Aruba 369 T 11 11
104 Aruba 370 G 11 11
105 Aruba 371 G 11 11
106 Aruba 372 A 11 11
107 Aruba 373 G 11 11
108 Aruba 374 G 11 11
109 Aruba 375 A 11 11
110 Aruba 376 G 11 11
111 Aruba 377 G 11 11
112 Aruba 378 T 11 11
113 Aruba 379 C 11 11
114 Aruba 380 T 11 11
115 Aruba 381 T 11 11
116 Aruba 382 A 11 11
117 Aruba 383 T 11 11
118 Aruba 384 C 11 11
119 Aruba 385 A 11 11
120 Aruba 386 G 11 11
121 Aruba 387 A 11 11
122 Aruba 388 G 11 11
123 Aruba 389 G 11 11
124 Aruba 390 C 11 11
125 Aruba 391 A 11 11
126 Aruba 392 C 11 11
127 Aruba 393 G 11 11
128 Aruba 394 T 11 11
129 Aruba 395 C 11 11
130 Aruba 396 A 11 11
131 Aruba 397 A 11 11
132 Aruba 398 C 11 11
133 Aruba 399 A 11 11
134 Aruba 400 T 11 11
135 Aruba 401 C 11 11
136 Aruba 402 T 11 11
137 Aruba 403 T 11 11
138 Aruba 404 A 11 11
139 Aruba 405 A 11 11
140 Aruba 406 A 11 11
141 Aruba 407 G 11 11
142 Aruba 408 A 11 11
143 Aruba 409 T 11 11
144 Aruba 410 G 11 11
145 Aruba 411 G 11 11
146 Aruba 412 C 11 11
147 Aruba 413 A 11 11
148 Aruba 414 C 11 11
149 Aruba 415 T 11 11
150 Aruba 416 T 11 11
151 Aruba 417 G 11 11
152 Aruba 418 T 11 11
153 Aruba 419 G 11 11
154 Aruba 420 G 11 11
155 Aruba 421 C 11 11
156 Aruba 422 T 11 11
157 Aruba 423 T 11 11
158 Aruba 424 A 11 11
159 Aruba 425 G 11 11
160 Aruba 426 T 11 11
161 Aruba 427 A 11 11
162 Aruba 428 G 11 11
163 Aruba 429 A 11 11
164 Aruba 430 A 11 11
165 Aruba 431 G 11 11
166 Aruba 432 T 11 11
167 Aruba 433 T 11 11
168 Aruba 434 G 11 11
169 Aruba 435 A 11 11
170 Aruba 436 A 11 11
171 Aruba 437 A 11 11
172 Aruba 438 A 11 11
173 Aruba 439 A 11 11
174 Aruba 440 G 11 11
175 Aruba 441 G 11 11
176 Aruba 442 C 11 11
177 Aruba 443 G 11 11
178 Aruba 444 T 11 11
179 Aruba 445 T 11 11
180 Aruba 446 T 11 11
181 Aruba 447 T 11 11
182 Aruba 448 G 11 11
183 Aruba 449 C 11 11
184 Aruba 450 C 11 11
185 Aruba 451 T 11 11
186 Aruba 452 C 11 11
187 Aruba 453 A 11 11
188 Aruba 454 A 11 11
189 Aruba 455 C 11 11
190 Aruba 456 T 11 11
191 Aruba 457 T 11 11
192 Aruba 458 G 11 11
193 Aruba 459 A 11 11
194 Aruba 460 A 11 11
195 Aruba 461 C 11 11
196 Aruba 462 A 11 11
197 Aruba 463 G 11 11
198 Aruba 464 C 11 11
199 Aruba 465 C 11 11
200 Aruba 466 C 11 11
201 Aruba 467 T 11 11
202 Aruba 468 A 11 11
203 Aruba 469 T 11 11
204 Aruba 470 G 11 11
205 Aruba 471 T 11 11
206 Aruba 472 G 11 11
207 Aruba 473 T 11 11
208 Aruba 474 T 11 11
209 Aruba 475 C 11 11
210 Aruba 476 A 11 11
211 Aruba 477 T 11 11
212 Aruba 478 C 11 11
213 Aruba 479 A 11 11
214 Aruba 480 A 11 11
215 Aruba 481 A 11 11
216 Aruba 482 C 11 11
217 Aruba 483 G 11 11
218 Aruba 484 T 11 11
219 Aruba 485 T 11 11
220 Aruba 486 C 11 11
221 Aruba 487 G 11 11
222 Aruba 488 G 11 11
223 Aruba 489 A 11 11
224 Aruba 490 T 11 11
225 Aruba 491 G 11 11
226 Aruba 492 C 11 11
227 Aruba 493 T 11 11
228 Aruba 494 C 11 11
229 Aruba 495 G 11 11
230 Aruba 496 A 11 11
231 Aruba 497 A 11 11
232 Aruba 498 C 11 11
233 Aruba 499 T 11 11
234 Aruba 500 G 11 11
235 Aruba 501 C 11 11
236 Aruba 502 A 11 11
237 Aruba 503 C 11 11
238 Aruba 504 C 11 11
239 Aruba 505 T 11 11
240 Aruba 506 C 11 11
241 Aruba 507 A 11 11
242 Aruba 508 T 11 11
243 Aruba 509 G 11 11
244 Aruba 510 G 11 11
245 Aruba 511 T 11 11
246 Aruba 512 C 11 11
247 Aruba 513 A 11 11
248 Aruba 514 T 11 11
249 Aruba 515 G 11 11
250 Aruba 516 T 11 11
251 Aruba 517 T 11 11
252 Aruba 518 A 11 11
253 Aruba 519 T 11 11
254 Aruba 520 G 11 11
255 Aruba 521 G 11 11
256 Aruba 522 T 11 11
257 Aruba 523 T 11 11
258 Aruba 524 G 11 11
259 Aruba 525 A 11 11
260 Aruba 526 G 11 11
261 Aruba 527 C 11 11
262 Aruba 528 T 11 11
263 Aruba 529 G 11 11
264 Aruba 530 G 11 11
265 Aruba 531 T 11 11
266 Aruba 532 A 11 11
267 Aruba 533 G 11 11
268 Aruba 534 C 11 11
269 Aruba 535 A 11 11
270 Aruba 536 G 11 11
271 Aruba 537 A 11 11
272 Aruba 538 A 11 11
273 Aruba 539 C 11 11
274 Aruba 540 T 11 11
275 Aruba 541 C 11 11
276 Aruba 542 G 11 11
277 Aruba 543 A 11 11
278 Aruba 544 A 11 11
279 Aruba 545 G 11 11
280 Aruba 546 G 11 11
281 Aruba 547 C 11 11
282 Aruba 548 A 11 11
283 Aruba 549 T 11 11
284 Aruba 550 T 11 11
285 Aruba 551 C 11 11
286 Aruba 552 A 11 11
287 Aruba 553 G 11 11
288 Aruba 554 T 11 11
289 Aruba 555 A 11 11
290 Aruba 556 C 11 11
291 Aruba 557 G 11 11
292 Aruba 558 G 11 11
293 Aruba 559 T 11 11
294 Aruba 560 C 11 11
295 Aruba 561 G 11 11
296 Aruba 562 T 11 11
297 Aruba 563 A 11 11
298 Aruba 564 G 11 11
299 Aruba 565 T 11 11
300 Aruba 566 G 11 11
301 Aruba 567 G 11 11
302 Aruba 568 T 11 11
303 Aruba 569 G 11 11
304 Aruba 570 A 11 11
305 Aruba 571 G 11 11
306 Aruba 572 A 11 11
307 Aruba 573 C 11 11
308 Aruba 574 A 11 11
309 Aruba 575 C 11 11
310 Aruba 576 T 11 11
311 Aruba 577 T 11 11
312 Aruba 578 G 11 11
313 Aruba 579 G 11 11
314 Aruba 580 T 11 11
315 Aruba 581 G 11 11
316 Aruba 582 T 11 11
317 Aruba 583 C 11 11
318 Aruba 584 C 11 11
319 Aruba 585 T 11 11
320 Aruba 586 T 11 11
321 Aruba 587 G 11 11
322 Aruba 588 T 11 11
323 Aruba 589 C 11 11
324 Aruba 590 C 11 11
325 Aruba 591 C 11 11
326 Aruba 592 T 11 11
327 Aruba 593 C 11 11
328 Aruba 594 A 11 11
329 Aruba 595 T 11 11
330 Aruba 596 G 11 11
331 Aruba 597 T 11 11
332 Aruba 598 G 11 11
333 Aruba 599 G 11 11
334 Aruba 600 G 11 11
335 Aruba 601 C 11 11
336 Aruba 602 G 11 11
337 Aruba 603 A 11 11
338 Aruba 604 A 11 11
339 Aruba 605 A 11 11
340 Aruba 606 T 11 11
341 Aruba 607 A 11 11
342 Aruba 608 C 11 11
343 Aruba 609 C 11 11
344 Aruba 610 A 11 11
345 Aruba 611 G 11 11
346 Aruba 612 T 11 11
347 Aruba 613 G 11 11
348 Aruba 614 G 11 11
349 Aruba 615 C 11 11
350 Aruba 616 T 11 11
351 Aruba 617 T 11 11
352 Aruba 618 A 11 11
353 Aruba 619 C 11 11
354 Aruba 620 C 11 11
355 Aruba 621 G 11 11
356 Aruba 622 C 11 11
357 Aruba 623 A 11 11
358 Aruba 624 A 11 11
359 Aruba 625 G 11 11
360 Aruba 626 G 11 11
361 Aruba 627 T 11 11
362 Aruba 628 T 11 11
363 Aruba 629 C 11 11
364 Aruba 630 T 11 11
365 Aruba 631 T 11 11
366 Aruba 632 C 11 11
367 Aruba 633 T 11 11
368 Aruba 634 T 11 11
369 Aruba 635 C 11 11
370 Aruba 636 G 11 11
371 Aruba 637 T 11 11
372 Aruba 638 A 11 11
373 Aruba 639 A 11 11
374 Aruba 640 G 11 11
375 Aruba 641 A 11 11
376 Aruba 642 A 11 11
377 Aruba 643 C 11 11
378 Aruba 644 G 11 11
379 Aruba 645 G 11 11
380 Aruba 646 T 11 11
381 Aruba 647 A 11 11
382 Aruba 648 A 11 11
383 Aruba 649 T 11 11
384 Aruba 650 A 11 11
385 Aruba 651 A 11 11
386 Aruba 652 A 11 11
387 Aruba 653 G 11 11
388 Aruba 654 G 11 11
389 Aruba 655 A 11 11
390 Aruba 656 G 11 11
391 Aruba 657 C 11 11
392 Aruba 658 T 11 11
393 Aruba 659 G 11 11
394 Aruba 660 G 11 11
395 Aruba 661 T 11 11
396 Aruba 662 G 11 11
397 Aruba 663 G 11 11
398 Aruba 664 C 11 11
399 Aruba 665 C 11 11
400 Aruba 666 A 11 11
401 Aruba 667 T 11 11
402 Aruba 668 A 11 11
403 Aruba 669 G 11 11
404 Aruba 670 T 11 11
405 Aruba 671 T 11 11
406 Aruba 672 A 11 11
407 Aruba 673 C 11 11
408 Aruba 674 G 11 11
409 Aruba 675 G 11 11
410 Aruba 676 C 11 11
411 Aruba 677 G 11 11
412 Aruba 678 C 11 11
413 Aruba 679 C 11 11
414 Aruba 680 G 11 11
415 Aruba 681 A 11 11
416 Aruba 682 T 11 11
417 Aruba 683 C 11 11
418 Aruba 684 T 11 11
419 Aruba 685 A 11 11
420 Aruba 686 A 11 11
421 Aruba 687 A 11 11
422 Aruba 688 G 11 11
423 Aruba 689 T 11 11
424 Aruba 690 C 11 11
425 Aruba 691 A 11 11
426 Aruba 692 T 11 11
427 Aruba 693 T 11 11
428 Aruba 694 T 11 11
429 Aruba 695 G 11 11
430 Aruba 696 A 11 11
431 Aruba 697 C 11 11
432 Aruba 698 T 11 11
433 Aruba 699 T 11 11
434 Aruba 700 A 11 11
435 Aruba 701 G 11 11
436 Aruba 702 G 11 11
437 Aruba 703 C 11 11
438 Aruba 704 G 11 11
439 Aruba 705 A 11 11
440 Aruba 706 C 11 11
441 Aruba 707 G 11 11
442 Aruba 708 A 11 11
443 Aruba 709 G 11 11
444 Aruba 710 C 11 11
445 Aruba 711 T 11 11
446 Aruba 712 T 11 11
447 Aruba 713 G 11 11
448 Aruba 714 G 11 11
449 Aruba 715 C 11 11
450 Aruba 716 A 11 11
451 Aruba 717 C 11 11
452 Aruba 718 T 11 11
453 Aruba 719 G 11 11
454 Aruba 720 A 11 11
455 Aruba 721 T 11 11
456 Aruba 722 C 11 11
457 Aruba 723 C 11 11
458 Aruba 724 T 11 11
459 Aruba 725 T 11 11
460 Aruba 726 A 11 11
461 Aruba 727 T 11 11
462 Aruba 728 G 11 11
463 Aruba 729 A 11 11
464 Aruba 730 A 11 11
465 Aruba 731 G 11 11
466 Aruba 732 A 11 11
467 Aruba 733 T 11 11
468 Aruba 734 T 11 11
469 Aruba 735 T 11 11
470 Aruba 736 T 11 11
471 Aruba 737 C 11 11
472 Aruba 738 A 11 11
473 Aruba 739 A 11 11
474 Aruba 740 G 11 11
475 Aruba 741 A 11 11
476 Aruba 742 A 11 11
477 Aruba 743 A 11 11
478 Aruba 744 A 11 11
479 Aruba 745 C 11 11
480 Aruba 746 T 11 11
481 Aruba 747 G 11 11
482 Aruba 748 G 11 11
483 Aruba 749 A 11 11
484 Aruba 750 A 11 11
485 Aruba 751 C 11 11
486 Aruba 752 A 11 11
487 Aruba 753 C 11 11
488 Aruba 754 T 11 11
489 Aruba 755 A 11 11
490 Aruba 756 A 11 11
491 Aruba 757 A 11 11
492 Aruba 758 C 11 11
493 Aruba 759 A 11 11
494 Aruba 760 T 11 11
495 Aruba 761 A 11 11
496 Aruba 762 G 11 11
497 Aruba 763 C 11 11
498 Aruba 764 A 11 11
499 Aruba 765 G 11 11
500 Aruba 766 T 11 11
501 Aruba 767 G 11 11
502 Aruba 768 G 11 11
503 Aruba 769 T 11 11
504 Aruba 770 G 11 11
505 Aruba 771 T 11 11
506 Aruba 772 T 11 11
507 Aruba 773 A 11 11
508 Aruba 774 C 11 11
509 Aruba 775 C 11 11
510 Aruba 776 C 11 11
511 Aruba 777 G 11 11
512 Aruba 778 T 11 11
513 Aruba 779 G 11 11
514 Aruba 780 A 11 11
515 Aruba 781 A 11 11
516 Aruba 782 C 11 11
517 Aruba 783 T 11 11
518 Aruba 784 C 11 11
519 Aruba 785 A 11 11
520 Aruba 786 T 11 11
521 Aruba 787 G 11 11
522 Aruba 788 C 11 11
523 Aruba 789 G 11 11
524 Aruba 790 T 11 11
525 Aruba 791 G 11 11
526 Aruba 792 A 11 11
527 Aruba 793 G 11 11
528 Aruba 794 C 11 11
529 Aruba 795 T 11 11
530 Aruba 796 T 11 11
531 Aruba 797 A 11 11
532 Aruba 798 A 11 11
533 Aruba 799 C 11 11
534 Aruba 800 G 11 11
535 Aruba 801 G 11 11
536 Aruba 802 A 11 11
537 Aruba 803 G 11 11
538 Aruba 804 G 11 11
539 Aruba 805 G 11 11