National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24                                  
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Zambia 26245 A 2 2
1 Zambia 26246 T 2 2
2 Zambia 26247 G 2 2
3 Zambia 26248 T 2 2
4 Zambia 26249 A 2 2
5 Zambia 26250 C 2 2
6 Zambia 26251 T 2 2
7 Zambia 26252 C 2 2
8 Zambia 26253 A 2 2
9 Zambia 26254 T 2 2
10 Zambia 26255 T 2 2
11 Zambia 26256 C 2 2
12 Zambia 26257 G 2 2
13 Zambia 26258 T 2 2
14 Zambia 26259 T 2 2
15 Zambia 26260 T 2 2
16 Zambia 26261 C 2 2
17 Zambia 26262 G 2 2
18 Zambia 26263 G 2 2
19 Zambia 26264 A 2 2
20 Zambia 26265 A 2 2
21 Zambia 26266 G 2 2
22 Zambia 26267 A 2 2
23 Zambia 26268 G 2 2
24 Zambia 26269 A 2 2
25 Zambia 26270 C 2 2
26 Zambia 26271 A 2 2
27 Zambia 26272 G 2 2
28 Zambia 26273 G 2 2
29 Zambia 26274 T 2 2
30 Zambia 26275 A 2 2
31 Zambia 26276 C 2 2
32 Zambia 26277 G 2 2
33 Zambia 26278 T 2 2
34 Zambia 26279 T 2 2
35 Zambia 26280 A 2 2
36 Zambia 26281 A 2 2
37 Zambia 26282 T 2 2
38 Zambia 26283 A 2 2
39 Zambia 26284 G 2 2
40 Zambia 26285 T 2 2
41 Zambia 26286 T 2 2
42 Zambia 26287 A 2 2
43 Zambia 26288 A 2 2
44 Zambia 26289 T 2 2
45 Zambia 26290 A 2 2
46 Zambia 26291 G 2 2
47 Zambia 26292 C 2 2
48 Zambia 26293 G 2 2
49 Zambia 26294 T 2 2
50 Zambia 26295 A 2 2
51 Zambia 26296 C 2 2
52 Zambia 26297 T 2 2
53 Zambia 26298 T 2 2
54 Zambia 26299 C 2 2
55 Zambia 26300 T 2 2
56 Zambia 26301 T 2 2
57 Zambia 26302 T 2 2
58 Zambia 26303 T 2 2
59 Zambia 26304 T 2 2
60 Zambia 26305 C 2 2
61 Zambia 26306 T 2 2
62 Zambia 26307 T 2 2
63 Zambia 26308 G 2 2
64 Zambia 26309 C 2 2
65 Zambia 26310 T 2 2
66 Zambia 26311 T 2 2
67 Zambia 26312 T 2 2
68 Zambia 26313 C 2 2
69 Zambia 26314 G 2 2
70 Zambia 26315 T 2 2
71 Zambia 26316 G 2 2
72 Zambia 26317 G 2 2
73 Zambia 26318 T 2 2
74 Zambia 26319 A 2 2
75 Zambia 26320 T 2 2
76 Zambia 26321 T 2 2
77 Zambia 26322 C 2 2
78 Zambia 26323 T 2 2
79 Zambia 26324 T 2 2
80 Zambia 26325 G 2 2
81 Zambia 26326 C 2 2
82 Zambia 26327 T 2 2
83 Zambia 26328 A 2 2
84 Zambia 26329 G 2 2
85 Zambia 26330 T 2 2
86 Zambia 26331 T 2 2
87 Zambia 26332 A 2 2
88 Zambia 26333 C 2 2
89 Zambia 26334 A 2 2
90 Zambia 26335 C 2 2
91 Zambia 26336 T 2 2
92 Zambia 26337 A 2 2
93 Zambia 26338 G 2 2
94 Zambia 26339 C 2 2
95 Zambia 26340 C 2 2
96 Zambia 26341 A 2 2
97 Zambia 26342 T 2 2
98 Zambia 26343 C 2 2
99 Zambia 26344 C 2 2
100 Zambia 26345 T 2 2
101 Zambia 26346 T 2 2
102 Zambia 26347 A 2 2
103 Zambia 26348 C 2 2
104 Zambia 26349 T 2 2
105 Zambia 26350 G 2 2
106 Zambia 26351 C 2 2
107 Zambia 26352 G 2 2
108 Zambia 26353 C 2 2
109 Zambia 26354 T 2 2
110 Zambia 26355 T 2 2
111 Zambia 26356 C 2 2
112 Zambia 26357 G 2 2
113 Zambia 26358 A 2 2
114 Zambia 26359 T 2 2
115 Zambia 26360 T 2 2
116 Zambia 26361 G 2 2
117 Zambia 26362 T 2 2
118 Zambia 26363 G 2 2
119 Zambia 26364 T 2 2
120 Zambia 26365 G 2 2
121 Zambia 26366 C 2 2
122 Zambia 26367 G 2 2
123 Zambia 26368 T 2 2
124 Zambia 26369 A 2 2
125 Zambia 26370 C 2 2
126 Zambia 26371 T 2 2
127 Zambia 26372 G 2 2
128 Zambia 26373 C 2 2
129 Zambia 26374 T 2 2
130 Zambia 26375 G 2 2
131 Zambia 26376 C 2 2
132 Zambia 26377 A 2 2
133 Zambia 26378 A 2 2
134 Zambia 26379 T 2 2
135 Zambia 26380 A 2 2
136 Zambia 26381 T 2 2
137 Zambia 26382 T 2 2
138 Zambia 26383 G 2 2
139 Zambia 26384 T 2 2
140 Zambia 26385 T 2 2
141 Zambia 26386 A 2 2
142 Zambia 26387 A 2 2
143 Zambia 26388 C 2 2
144 Zambia 26389 G 2 2
145 Zambia 26390 T 2 2
146 Zambia 26391 G 2 2
147 Zambia 26392 A 2 2
148 Zambia 26393 G 2 2
149 Zambia 26394 T 2 2
150 Zambia 26395 C 2 2
151 Zambia 26396 T 2 2
152 Zambia 26397 T 2 2
153 Zambia 26398 G 2 2
154 Zambia 26399 T 2 2
155 Zambia 26400 A 2 2
156 Zambia 26401 A 2 2
157 Zambia 26402 A 2 2
158 Zambia 26403 A 2 2
159 Zambia 26404 C 2 2
160 Zambia 26405 C 2 2
161 Zambia 26406 T 2 2
162 Zambia 26407 T 2 2
163 Zambia 26408 C 2 2
164 Zambia 26409 T 2 2
165 Zambia 26410 T 2 2
166 Zambia 26411 T 2 2
167 Zambia 26412 T 2 2
168 Zambia 26413 T 2 2
169 Zambia 26414 A 2 2
170 Zambia 26415 C 2 2
171 Zambia 26416 G 2 2
172 Zambia 26417 T 2 2
173 Zambia 26418 T 2 2
174 Zambia 26419 T 2 2
175 Zambia 26420 A 2 2
176 Zambia 26421 C 2 2
177 Zambia 26422 T 2 2
178 Zambia 26423 C 2 2
179 Zambia 26424 T 2 2
180 Zambia 26425 C 2 2
181 Zambia 26426 G 2 2
182 Zambia 26427 T 2 2
183 Zambia 26428 G 2 2
184 Zambia 26429 T 2 2
185 Zambia 26430 T 2 2
186 Zambia 26431 A 2 2
187 Zambia 26432 A 2 2
188 Zambia 26433 A 2 2
189 Zambia 26434 A 2 2
190 Zambia 26435 A 2 2
191 Zambia 26436 T 2 2
192 Zambia 26437 C 2 2
193 Zambia 26438 T 2 2
194 Zambia 26439 G 2 2
195 Zambia 26440 A 2 2
196 Zambia 26441 A 2 2
197 Zambia 26442 T 2 2
198 Zambia 26443 T 2 2
199 Zambia 26444 C 2 2
200 Zambia 26445 T 2 2
201 Zambia 26446 T 2 2
202 Zambia 26447 C 2 2
203 Zambia 26448 T 2 2
204 Zambia 26449 A 2 2
205 Zambia 26450 G 2 2
206 Zambia 26451 A 2 2
207 Zambia 26452 G 2 2
208 Zambia 26453 T 2 2
209 Zambia 26454 T 2 2
210 Zambia 26455 C 2 2
211 Zambia 26456 C 2 2
212 Zambia 26457 T 2 2
213 Zambia 26458 G 2 2
214 Zambia 26459 A 2 2
215 Zambia 26460 T 2 2
216 Zambia 26461 C 2 2
217 Zambia 26462 T 2 2
218 Zambia 26463 T 2 2
219 Zambia 26464 C 2 2
220 Zambia 26465 T 2 2
221 Zambia 26466 G 2 2
222 Zambia 26467 G 2 2
223 Zambia 26468 T 2 2
224 Zambia 26469 C 2 2
225 Zambia 26470 T 2 2
226 Zambia 26471 A 2 2
227 Zambia 26472 A 2 2