National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15         1                        
G     3                                  
I     9                                  
K     6                                  
L     43         1                        
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24                                  
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Vietnam 26245 A 116 116
1 Vietnam 26246 T 116 116
2 Vietnam 26247 G 116 116
3 Vietnam 26248 T 116 116
4 Vietnam 26249 A 116 116
5 Vietnam 26250 C 116 116
6 Vietnam 26251 T 116 116
7 Vietnam 26252 C 116 116
8 Vietnam 26253 A 116 116
9 Vietnam 26254 T 116 116
10 Vietnam 26255 T 116 116
11 Vietnam 26256 C T 116 115 Phe4Phe
12 Vietnam 26257 G 116 116
13 Vietnam 26258 T 116 116
14 Vietnam 26259 T 116 116
15 Vietnam 26260 T 116 116
16 Vietnam 26261 C 116 116
17 Vietnam 26262 G 116 116
18 Vietnam 26263 G 116 116
19 Vietnam 26264 A 116 116
20 Vietnam 26265 A 116 116
21 Vietnam 26266 G 116 116
22 Vietnam 26267 A 116 116
23 Vietnam 26268 G 116 116
24 Vietnam 26269 A 116 116
25 Vietnam 26270 C 116 116
26 Vietnam 26271 A 116 116
27 Vietnam 26272 G 116 116
28 Vietnam 26273 G 116 116
29 Vietnam 26274 T 116 116
30 Vietnam 26275 A 116 116
31 Vietnam 26276 C 116 116
32 Vietnam 26277 G 116 116
33 Vietnam 26278 T 116 116
34 Vietnam 26279 T 116 116
35 Vietnam 26280 A 116 116
36 Vietnam 26281 A 116 116
37 Vietnam 26282 T 116 116
38 Vietnam 26283 A 116 116
39 Vietnam 26284 G 116 116
40 Vietnam 26285 T 116 116
41 Vietnam 26286 T 116 116
42 Vietnam 26287 A 116 116
43 Vietnam 26288 A 116 116
44 Vietnam 26289 T 116 116
45 Vietnam 26290 A 116 116
46 Vietnam 26291 G 116 116
47 Vietnam 26292 C 116 116
48 Vietnam 26293 G 116 116
49 Vietnam 26294 T 116 116
50 Vietnam 26295 A 116 116
51 Vietnam 26296 C 116 116
52 Vietnam 26297 T 116 116
53 Vietnam 26298 T 116 116
54 Vietnam 26299 C 116 116
55 Vietnam 26300 T 116 116
56 Vietnam 26301 T 116 116
57 Vietnam 26302 T 116 116
58 Vietnam 26303 T 116 116
59 Vietnam 26304 T 116 116
60 Vietnam 26305 C 116 116
61 Vietnam 26306 T 116 116
62 Vietnam 26307 T 116 116
63 Vietnam 26308 G 116 116
64 Vietnam 26309 C 116 116
65 Vietnam 26310 T 116 116
66 Vietnam 26311 T 116 116
67 Vietnam 26312 T 116 116
68 Vietnam 26313 C 116 116
69 Vietnam 26314 G 116 116
70 Vietnam 26315 T 116 116
71 Vietnam 26316 G 116 116
72 Vietnam 26317 G 116 116
73 Vietnam 26318 T 116 116
74 Vietnam 26319 A 116 116
75 Vietnam 26320 T 116 116
76 Vietnam 26321 T 116 116
77 Vietnam 26322 C 116 116
78 Vietnam 26323 T 116 116
79 Vietnam 26324 T 116 116
80 Vietnam 26325 G 116 116
81 Vietnam 26326 C 116 116
82 Vietnam 26327 T 116 116
83 Vietnam 26328 A 116 116
84 Vietnam 26329 G 116 116
85 Vietnam 26330 T 116 116
86 Vietnam 26331 T 116 116
87 Vietnam 26332 A 116 116
88 Vietnam 26333 C 116 116
89 Vietnam 26334 A 116 116
90 Vietnam 26335 C 116 116
91 Vietnam 26336 T 116 116
92 Vietnam 26337 A 116 116
93 Vietnam 26338 G 116 116
94 Vietnam 26339 C 116 116
95 Vietnam 26340 C 116 116
96 Vietnam 26341 A 116 116
97 Vietnam 26342 T 116 116
98 Vietnam 26343 C 116 116
99 Vietnam 26344 C 116 116
100 Vietnam 26345 T 116 116
101 Vietnam 26346 T 116 116
102 Vietnam 26347 A 116 116
103 Vietnam 26348 C 116 116
104 Vietnam 26349 T 116 116
105 Vietnam 26350 G 116 116
106 Vietnam 26351 C 116 116
107 Vietnam 26352 G 116 116
108 Vietnam 26353 C 116 116
109 Vietnam 26354 T 116 116
110 Vietnam 26355 T 116 116
111 Vietnam 26356 C 116 116
112 Vietnam 26357 G 116 116
113 Vietnam 26358 A 116 116
114 Vietnam 26359 T 116 116
115 Vietnam 26360 T 116 116
116 Vietnam 26361 G 116 116
117 Vietnam 26362 T 116 116
118 Vietnam 26363 G 116 116
119 Vietnam 26364 T 116 116
120 Vietnam 26365 G 116 116
121 Vietnam 26366 C 116 116
122 Vietnam 26367 G 116 116
123 Vietnam 26368 T 116 116
124 Vietnam 26369 A 116 116
125 Vietnam 26370 C 116 116
126 Vietnam 26371 T 116 116
127 Vietnam 26372 G 116 116
128 Vietnam 26373 C 116 116
129 Vietnam 26374 T 116 116
130 Vietnam 26375 G 116 116
131 Vietnam 26376 C 116 116
132 Vietnam 26377 A 116 116
133 Vietnam 26378 A 116 116
134 Vietnam 26379 T 116 116
135 Vietnam 26380 A 116 116
136 Vietnam 26381 T 116 116
137 Vietnam 26382 T 116 116
138 Vietnam 26383 G 116 116
139 Vietnam 26384 T 116 116
140 Vietnam 26385 T 116 116
141 Vietnam 26386 A 116 116
142 Vietnam 26387 A 116 116
143 Vietnam 26388 C 116 116
144 Vietnam 26389 G 116 116
145 Vietnam 26390 T 116 116
146 Vietnam 26391 G 116 116
147 Vietnam 26392 A 116 116
148 Vietnam 26393 G 116 116
149 Vietnam 26394 T 116 116
150 Vietnam 26395 C 116 116
151 Vietnam 26396 T 116 116
152 Vietnam 26397 T 116 116
153 Vietnam 26398 G 116 116
154 Vietnam 26399 T 116 116
155 Vietnam 26400 A 116 116
156 Vietnam 26401 A 116 116
157 Vietnam 26402 A 116 116
158 Vietnam 26403 A 116 116
159 Vietnam 26404 C 116 116
160 Vietnam 26405 C 116 116
161 Vietnam 26406 T 116 116
162 Vietnam 26407 T 116 116
163 Vietnam 26408 C 116 116
164 Vietnam 26409 T 116 116
165 Vietnam 26410 T 116 116
166 Vietnam 26411 T 116 116
167 Vietnam 26412 T 116 116
168 Vietnam 26413 T 116 116
169 Vietnam 26414 A 116 116
170 Vietnam 26415 C 116 116
171 Vietnam 26416 G 116 116
172 Vietnam 26417 T 116 116
173 Vietnam 26418 T 116 116
174 Vietnam 26419 T 116 116
175 Vietnam 26420 A 116 116
176 Vietnam 26421 C 116 116
177 Vietnam 26422 T 116 116
178 Vietnam 26423 C 116 116
179 Vietnam 26424 T 116 116
180 Vietnam 26425 C 116 116
181 Vietnam 26426 G 116 116
182 Vietnam 26427 T 116 116
183 Vietnam 26428 G 116 116
184 Vietnam 26429 T 116 116
185 Vietnam 26430 T 116 116
186 Vietnam 26431 A 116 116
187 Vietnam 26432 A 116 116
188 Vietnam 26433 A 116 116
189 Vietnam 26434 A 116 116
190 Vietnam 26435 A 116 116
191 Vietnam 26436 T 116 116
192 Vietnam 26437 C 116 116
193 Vietnam 26438 T 116 116
194 Vietnam 26439 G 116 116
195 Vietnam 26440 A 116 116
196 Vietnam 26441 A 116 116
197 Vietnam 26442 T 116 116
198 Vietnam 26443 T 116 116
199 Vietnam 26444 C 116 116
200 Vietnam 26445 T 116 116
201 Vietnam 26446 T 116 116
202 Vietnam 26447 C 116 116
203 Vietnam 26448 T 116 116
204 Vietnam 26449 A 116 116
205 Vietnam 26450 G 116 116
206 Vietnam 26451 A 116 116
207 Vietnam 26452 G 116 116
208 Vietnam 26453 T 116 116
209 Vietnam 26454 T 116 116
210 Vietnam 26455 C 116 116
211 Vietnam 26456 C 116 116
212 Vietnam 26457 T 116 116
213 Vietnam 26458 G 116 116
214 Vietnam 26459 A 116 116
215 Vietnam 26460 T 116 116
216 Vietnam 26461 C T 116 114 Leu73Phe
217 Vietnam 26462 T 116 116
218 Vietnam 26463 T 116 116
219 Vietnam 26464 C 116 116
220 Vietnam 26465 T 116 116
221 Vietnam 26466 G 116 116
222 Vietnam 26467 G 116 116
223 Vietnam 26468 T 116 116
224 Vietnam 26469 C 116 116
225 Vietnam 26470 T 116 116
226 Vietnam 26471 A 116 116
227 Vietnam 26472 A 116 116