National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15                                  
P     6                           1      
R     9                                  
S     24                                  
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Uzbekistan 26245 A <*> 2 2
1 Uzbekistan 26246 T <*> 2 2
2 Uzbekistan 26247 G <*> 2 2
3 Uzbekistan 26248 T <*> 2 2
4 Uzbekistan 26249 A <*> 2 2
5 Uzbekistan 26250 C <*> 2 2
6 Uzbekistan 26251 T <*> 2 2
7 Uzbekistan 26252 C <*> 2 2
8 Uzbekistan 26253 A <*> 2 2
9 Uzbekistan 26254 T <*> 2 2
10 Uzbekistan 26255 T <*> 2 2
11 Uzbekistan 26256 C <*> 2 2
12 Uzbekistan 26257 G <*> 2 2
13 Uzbekistan 26258 T <*> 2 2
14 Uzbekistan 26259 T <*> 2 2
15 Uzbekistan 26260 T <*> 2 2
16 Uzbekistan 26261 C <*> 2 2
17 Uzbekistan 26262 G <*> 2 2
18 Uzbekistan 26263 G <*> 2 2
19 Uzbekistan 26264 A <*> 2 2
20 Uzbekistan 26265 A <*> 2 2
21 Uzbekistan 26266 G <*> 2 2
22 Uzbekistan 26267 A <*> 2 2
23 Uzbekistan 26268 G <*> 2 2
24 Uzbekistan 26269 A <*> 2 2
25 Uzbekistan 26270 C <*> 2 2
26 Uzbekistan 26271 A <*> 2 2
27 Uzbekistan 26272 G <*> 2 2
28 Uzbekistan 26273 G <*> 2 2
29 Uzbekistan 26274 T <*> 2 2
30 Uzbekistan 26275 A <*> 2 2
31 Uzbekistan 26276 C <*> 2 2
32 Uzbekistan 26277 G <*> 2 2
33 Uzbekistan 26278 T <*> 2 2
34 Uzbekistan 26279 T <*> 2 2
35 Uzbekistan 26280 A <*> 2 2
36 Uzbekistan 26281 A <*> 2 2
37 Uzbekistan 26282 T <*> 2 2
38 Uzbekistan 26283 A <*> 2 2
39 Uzbekistan 26284 G <*> 2 2
40 Uzbekistan 26285 T <*> 2 2
41 Uzbekistan 26286 T <*> 2 2
42 Uzbekistan 26287 A <*> 2 2
43 Uzbekistan 26288 A <*> 2 2
44 Uzbekistan 26289 T <*> 2 2
45 Uzbekistan 26290 A <*> 2 2
46 Uzbekistan 26291 G <*> 2 2
47 Uzbekistan 26292 C <*> 2 2
48 Uzbekistan 26293 G <*> 2 2
49 Uzbekistan 26294 T <*> 2 2
50 Uzbekistan 26295 A <*> 2 2
51 Uzbekistan 26296 C <*> 2 2
52 Uzbekistan 26297 T <*> 2 2
53 Uzbekistan 26298 T <*> 2 2
54 Uzbekistan 26299 C <*> 2 2
55 Uzbekistan 26300 T <*> 2 2
56 Uzbekistan 26301 T <*> 2 2
57 Uzbekistan 26302 T <*> 2 2
58 Uzbekistan 26303 T <*> 2 2
59 Uzbekistan 26304 T <*> 2 2
60 Uzbekistan 26305 C <*> 2 2
61 Uzbekistan 26306 T <*> 2 2
62 Uzbekistan 26307 T <*> 2 2
63 Uzbekistan 26308 G <*> 2 2
64 Uzbekistan 26309 C <*> 2 2
65 Uzbekistan 26310 T <*> 2 2
66 Uzbekistan 26311 T <*> 2 2
67 Uzbekistan 26312 T <*> 2 2
68 Uzbekistan 26313 C <*> 2 2
69 Uzbekistan 26314 G <*> 2 2
70 Uzbekistan 26315 T <*> 2 2
71 Uzbekistan 26316 G <*> 2 2
72 Uzbekistan 26317 G <*> 2 2
73 Uzbekistan 26318 T <*> 2 2
74 Uzbekistan 26319 A <*> 2 2
75 Uzbekistan 26320 T <*> 2 2
76 Uzbekistan 26321 T <*> 2 2
77 Uzbekistan 26322 C <*> 2 2
78 Uzbekistan 26323 T <*> 2 2
79 Uzbekistan 26324 T <*> 2 2
80 Uzbekistan 26325 G <*> 2 2
81 Uzbekistan 26326 C <*> 2 2
82 Uzbekistan 26327 T <*> 2 2
83 Uzbekistan 26328 A <*> 2 2
84 Uzbekistan 26329 G <*> 2 2
85 Uzbekistan 26330 T <*> 2 2
86 Uzbekistan 26331 T <*> 2 2
87 Uzbekistan 26332 A <*> 2 2
88 Uzbekistan 26333 C <*> 2 2
89 Uzbekistan 26334 A <*> 2 2
90 Uzbekistan 26335 C <*> 2 2
91 Uzbekistan 26336 T <*> 2 2
92 Uzbekistan 26337 A <*> 2 2
93 Uzbekistan 26338 G <*> 2 2
94 Uzbekistan 26339 C <*> 2 2
95 Uzbekistan 26340 C <*> 2 2
96 Uzbekistan 26341 A <*> 2 2
97 Uzbekistan 26342 T <*> 2 2
98 Uzbekistan 26343 C <*> 2 2
99 Uzbekistan 26344 C <*> 2 2
100 Uzbekistan 26345 T <*> 2 2
101 Uzbekistan 26346 T <*> 2 2
102 Uzbekistan 26347 A <*> 2 2
103 Uzbekistan 26348 C <*> 2 2
104 Uzbekistan 26349 T <*> 2 2
105 Uzbekistan 26350 G <*> 2 2
106 Uzbekistan 26351 C <*> 2 2
107 Uzbekistan 26352 G <*> 2 2
108 Uzbekistan 26353 C <*> 2 2
109 Uzbekistan 26354 T <*> 2 2
110 Uzbekistan 26355 T <*> 2 2
111 Uzbekistan 26356 C <*> 2 2
112 Uzbekistan 26357 G <*> 2 2
113 Uzbekistan 26358 A <*> 2 2
114 Uzbekistan 26359 T <*> 2 2
115 Uzbekistan 26360 T <*> 2 2
116 Uzbekistan 26361 G <*> 2 2
117 Uzbekistan 26362 T <*> 2 2
118 Uzbekistan 26363 G <*> 2 2
119 Uzbekistan 26364 T <*> 2 2
120 Uzbekistan 26365 G <*> 2 2
121 Uzbekistan 26366 C <*> 2 2
122 Uzbekistan 26367 G <*> 2 2
123 Uzbekistan 26368 T <*> 2 2
124 Uzbekistan 26369 A <*> 2 2
125 Uzbekistan 26370 C <*> 2 2
126 Uzbekistan 26371 T <*> 2 2
127 Uzbekistan 26372 G <*> 2 2
128 Uzbekistan 26373 C <*> 2 2
129 Uzbekistan 26374 T <*> 2 2
130 Uzbekistan 26375 G <*> 2 2
131 Uzbekistan 26376 C <*> 2 2
132 Uzbekistan 26377 A <*> 2 2
133 Uzbekistan 26378 A <*> 2 2
134 Uzbekistan 26379 T <*> 2 2
135 Uzbekistan 26380 A <*> 2 2
136 Uzbekistan 26381 T <*> 2 2
137 Uzbekistan 26382 T <*> 2 2
138 Uzbekistan 26383 G <*> 2 2
139 Uzbekistan 26384 T <*> 2 2
140 Uzbekistan 26385 T <*> 2 2
141 Uzbekistan 26386 A <*> 2 2
142 Uzbekistan 26387 A <*> 2 2
143 Uzbekistan 26388 C <*> 2 2
144 Uzbekistan 26389 G <*> 2 2
145 Uzbekistan 26390 T <*> 2 2
146 Uzbekistan 26391 G <*> 2 2
147 Uzbekistan 26392 A <*> 2 2
148 Uzbekistan 26393 G <*> 2 2
149 Uzbekistan 26394 T <*> 2 2
150 Uzbekistan 26395 C <*> 2 2
151 Uzbekistan 26396 T <*> 2 2
152 Uzbekistan 26397 T <*> 2 2
153 Uzbekistan 26398 G <*> 2 2
154 Uzbekistan 26399 T <*> 2 2
155 Uzbekistan 26400 A <*> 2 2
156 Uzbekistan 26401 A <*> 2 2
157 Uzbekistan 26402 A <*> 2 2
158 Uzbekistan 26403 A <*> 2 2
159 Uzbekistan 26404 C <*> 2 2
160 Uzbekistan 26405 C <*> 2 2
161 Uzbekistan 26406 T <*> 2 2
162 Uzbekistan 26407 T <*> 2 2
163 Uzbekistan 26408 C <*> 2 2
164 Uzbekistan 26409 T <*> 2 2
165 Uzbekistan 26410 T <*> 2 2
166 Uzbekistan 26411 T <*> 2 2
167 Uzbekistan 26412 T <*> 2 2
168 Uzbekistan 26413 T <*> 2 2
169 Uzbekistan 26414 A <*> 2 2
170 Uzbekistan 26415 C <*> 2 2
171 Uzbekistan 26416 G <*> 2 2
172 Uzbekistan 26417 T <*> 2 2
173 Uzbekistan 26418 T <*> 2 2
174 Uzbekistan 26419 T <*> 2 2
175 Uzbekistan 26420 A <*> 2 2
176 Uzbekistan 26421 C <*> 2 2
177 Uzbekistan 26422 T <*> 2 2
178 Uzbekistan 26423 C <*> 2 2
179 Uzbekistan 26424 T <*> 2 2
180 Uzbekistan 26425 C <*> 2 2
181 Uzbekistan 26426 G <*> 2 2
182 Uzbekistan 26427 T <*> 2 2
183 Uzbekistan 26428 G <*> 2 2
184 Uzbekistan 26429 T <*> 2 2
185 Uzbekistan 26430 T <*> 2 2
186 Uzbekistan 26431 A <*> 2 2
187 Uzbekistan 26432 A <*> 2 2
188 Uzbekistan 26433 A <*> 2 2
189 Uzbekistan 26434 A <*> 2 2
190 Uzbekistan 26435 A <*> 2 2
191 Uzbekistan 26436 T <*> 2 2
192 Uzbekistan 26437 C <*> 2 2
193 Uzbekistan 26438 T <*> 2 2
194 Uzbekistan 26439 G <*> 2 2
195 Uzbekistan 26440 A <*> 2 2
196 Uzbekistan 26441 A <*> 2 2
197 Uzbekistan 26442 T <*> 2 2
198 Uzbekistan 26443 T <*> 2 2
199 Uzbekistan 26444 C <*> 2 2
200 Uzbekistan 26445 T <*> 2 2
201 Uzbekistan 26446 T <*> 2 2
202 Uzbekistan 26447 C <*> 2 2
203 Uzbekistan 26448 T <*> 2 2
204 Uzbekistan 26449 A <*> 2 2
205 Uzbekistan 26450 G <*> 2 2
206 Uzbekistan 26451 A <*> 2 2
207 Uzbekistan 26452 G <*> 2 2
208 Uzbekistan 26453 T <*> 2 2
209 Uzbekistan 26454 T <*> 2 2
210 Uzbekistan 26455 C T,<*> 2 1 p.Pro71Ser
211 Uzbekistan 26456 C <*> 2 2
212 Uzbekistan 26457 T <*> 2 2
213 Uzbekistan 26458 G <*> 2 2
214 Uzbekistan 26459 A <*> 2 2
215 Uzbekistan 26460 T <*> 2 2
216 Uzbekistan 26461 C <*> 2 2
217 Uzbekistan 26462 T <*> 2 2
218 Uzbekistan 26463 T <*> 2 2
219 Uzbekistan 26464 C <*> 2 2
220 Uzbekistan 26465 T <*> 2 2
221 Uzbekistan 26466 G <*> 2 2
222 Uzbekistan 26467 G <*> 2 2
223 Uzbekistan 26468 T <*> 2 2
224 Uzbekistan 26469 C <*> 2 2
225 Uzbekistan 26470 T <*> 2 2
226 Uzbekistan 26471 A <*> 2 2
227 Uzbekistan 26472 A <*> 2 2