National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P R S T V Y
*     2                                    
-     228                                    
?                                          
A     12 1                                  
C     9                                    
D     3                                    
E     6                                    
F     15         1                          
G     3                                    
H                                          
I     9                                    
K     6                                    
L     43             1                      
M     3                                    
N     15                                    
P     6                                    
R     9                                    
S     24                                    
T     12                                    
V     39               1                    
Y     12                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Turkey 26245 A 486 486
1 Turkey 26246 T 486 486
2 Turkey 26247 G 486 486
3 Turkey 26248 T 486 486
4 Turkey 26249 A 486 486
5 Turkey 26250 C 486 486
6 Turkey 26251 T 486 486
7 Turkey 26252 C 486 486
8 Turkey 26253 A 486 486
9 Turkey 26254 T 486 486
10 Turkey 26255 T 486 486
11 Turkey 26256 C T 487 485 Phe4Phe
12 Turkey 26257 G 487 487
13 Turkey 26258 T 487 487
14 Turkey 26259 T 487 487
15 Turkey 26260 T 487 487
16 Turkey 26261 C 487 487
17 Turkey 26262 G 487 487
18 Turkey 26263 G 487 486
19 Turkey 26264 A 487 487
20 Turkey 26265 A 487 487
21 Turkey 26266 G 487 487
22 Turkey 26267 A 487 487
23 Turkey 26268 G 487 487
24 Turkey 26269 A 487 487
25 Turkey 26270 C 487 487
26 Turkey 26271 A 487 487
27 Turkey 26272 G 487 487
28 Turkey 26273 G 487 487
29 Turkey 26274 T 487 487
30 Turkey 26275 A 487 487
31 Turkey 26276 C 487 487
32 Turkey 26277 G 487 487
33 Turkey 26278 T 487 487
34 Turkey 26279 T 487 487
35 Turkey 26280 A 487 487
36 Turkey 26281 A 487 487
37 Turkey 26282 T 487 487
38 Turkey 26283 A 487 487
39 Turkey 26284 G 487 487
40 Turkey 26285 T 487 487
41 Turkey 26286 T 487 487
42 Turkey 26287 A 487 487
43 Turkey 26288 A 487 487
44 Turkey 26289 T 487 487
45 Turkey 26290 A 487 487
46 Turkey 26291 G 487 487
47 Turkey 26292 C 487 487
48 Turkey 26293 G 487 487
49 Turkey 26294 T 487 487
50 Turkey 26295 A 487 487
51 Turkey 26296 C 487 487
52 Turkey 26297 T 487 487
53 Turkey 26298 T 487 487
54 Turkey 26299 C 487 487
55 Turkey 26300 T 487 486
56 Turkey 26301 T 487 487
57 Turkey 26302 T 487 487
58 Turkey 26303 T 487 487
59 Turkey 26304 T 487 487
60 Turkey 26305 C 487 487
61 Turkey 26306 T 487 487
62 Turkey 26307 T 487 487
63 Turkey 26308 G 487 487
64 Turkey 26309 C 487 487
65 Turkey 26310 T 487 487
66 Turkey 26311 T 487 487
67 Turkey 26312 T 487 487
68 Turkey 26313 C 487 487
69 Turkey 26314 G 487 487
70 Turkey 26315 T 487 487
71 Turkey 26316 G 487 487
72 Turkey 26317 G 487 487
73 Turkey 26318 T 487 487
74 Turkey 26319 A 487 487
75 Turkey 26320 T 487 487
76 Turkey 26321 T 487 487
77 Turkey 26322 C 487 487
78 Turkey 26323 T 487 487
79 Turkey 26324 T 487 487
80 Turkey 26325 G 487 487
81 Turkey 26326 C 487 487
82 Turkey 26327 T 487 487
83 Turkey 26328 A 487 487
84 Turkey 26329 G 487 487
85 Turkey 26330 T 487 487
86 Turkey 26331 T 487 487
87 Turkey 26332 A 487 487
88 Turkey 26333 C 487 487
89 Turkey 26334 A 487 487
90 Turkey 26335 C 487 487
91 Turkey 26336 T 487 487
92 Turkey 26337 A 487 487
93 Turkey 26338 G 487 487
94 Turkey 26339 C 487 487
95 Turkey 26340 C T 487 486 Ala32Ala
96 Turkey 26341 A 487 487
97 Turkey 26342 T 487 487
98 Turkey 26343 C 487 487
99 Turkey 26344 C 487 487
100 Turkey 26345 T 487 487
101 Turkey 26346 T 488 488
102 Turkey 26347 A 488 488
103 Turkey 26348 C 488 488
104 Turkey 26349 T 488 488
105 Turkey 26350 G 488 488
106 Turkey 26351 C 488 487
107 Turkey 26352 G 488 487
108 Turkey 26353 C 487 486
109 Turkey 26354 T 486 485
110 Turkey 26355 T 484 483
111 Turkey 26356 C 484 483
112 Turkey 26357 G 484 483
113 Turkey 26358 A 484 483
114 Turkey 26359 T 484 483
115 Turkey 26360 T 484 483
116 Turkey 26361 G 484 483
117 Turkey 26362 T 484 483
118 Turkey 26363 G 484 483
119 Turkey 26364 T 484 483
120 Turkey 26365 G 484 483
121 Turkey 26366 C 484 483
122 Turkey 26367 G 484 483
123 Turkey 26368 T 484 483
124 Turkey 26369 A 484 483
125 Turkey 26370 C 484 484
126 Turkey 26371 T 484 484
127 Turkey 26372 G 484 484
128 Turkey 26373 C 484 484
129 Turkey 26374 T 484 483
130 Turkey 26375 G 484 483
131 Turkey 26376 C 484 483
132 Turkey 26377 A 484 483
133 Turkey 26378 A 484 483
134 Turkey 26379 T 484 483
135 Turkey 26380 A 484 483
136 Turkey 26381 T 484 483
137 Turkey 26382 T 484 483
138 Turkey 26383 G 484 483
139 Turkey 26384 T 484 483
140 Turkey 26385 T 484 483
141 Turkey 26386 A 484 483
142 Turkey 26387 A 484 483
143 Turkey 26388 C 484 483
144 Turkey 26389 G 484 483
145 Turkey 26390 T 484 483
146 Turkey 26391 G 484 483
147 Turkey 26392 A 484 483
148 Turkey 26393 G 484 483
149 Turkey 26394 T 484 483
150 Turkey 26395 C 484 483
151 Turkey 26396 T A 484 482 Leu51His
152 Turkey 26397 T 484 483
153 Turkey 26398 G 484 483
154 Turkey 26399 T 484 483
155 Turkey 26400 A 484 482
156 Turkey 26401 A 484 482
157 Turkey 26402 A 484 482
158 Turkey 26403 A 484 482
159 Turkey 26404 C 484 483
160 Turkey 26405 C 484 483
161 Turkey 26406 T 484 483
162 Turkey 26407 T 484 483
163 Turkey 26408 C 484 483
164 Turkey 26409 T 484 482
165 Turkey 26410 T 484 483
166 Turkey 26411 T 484 483
167 Turkey 26412 T 484 483
168 Turkey 26413 T 484 483
169 Turkey 26414 A 484 483
170 Turkey 26415 C 484 483
171 Turkey 26416 G A 484 482 Val58Ile
172 Turkey 26417 T 484 484
173 Turkey 26418 T 484 484
174 Turkey 26419 T 484 484
175 Turkey 26420 A 484 484
176 Turkey 26421 C 484 484
177 Turkey 26422 T 484 484
178 Turkey 26423 C 484 484
179 Turkey 26424 T 484 484
180 Turkey 26425 C 484 484
181 Turkey 26426 G 484 484
182 Turkey 26427 T 484 484
183 Turkey 26428 G 484 484
184 Turkey 26429 T 484 484
185 Turkey 26430 T 484 484
186 Turkey 26431 A 484 484
187 Turkey 26432 A 484 484
188 Turkey 26433 A 484 484
189 Turkey 26434 A 484 484
190 Turkey 26435 A 484 483
191 Turkey 26436 T 484 483
192 Turkey 26437 C 484 483
193 Turkey 26438 T 484 483
194 Turkey 26439 G 484 483
195 Turkey 26440 A 484 483
196 Turkey 26441 A 484 483
197 Turkey 26442 T 484 483
198 Turkey 26443 T 484 483
199 Turkey 26444 C 484 483
200 Turkey 26445 T 484 483
201 Turkey 26446 T 481 480
202 Turkey 26447 C 481 480
203 Turkey 26448 T 472 470
204 Turkey 26449 A 472 470
205 Turkey 26450 G 472 470
206 Turkey 26451 A 472 471
207 Turkey 26452 G 472 471
208 Turkey 26453 T 472 471
209 Turkey 26454 T 472 471
210 Turkey 26455 C 472 471
211 Turkey 26456 C 472 471
212 Turkey 26457 T 472 471
213 Turkey 26458 G 472 471
214 Turkey 26459 A 472 471
215 Turkey 26460 T 472 472
216 Turkey 26461 C 472 472
217 Turkey 26462 T 472 472
218 Turkey 26463 T 472 472
219 Turkey 26464 C 472 472
220 Turkey 26465 T 472 472
221 Turkey 26466 G 472 472
222 Turkey 26467 G 472 472
223 Turkey 26468 T 472 472
224 Turkey 26469 C 472 472
225 Turkey 26470 T 472 472
226 Turkey 26471 A 472 472
227 Turkey 26472 A 472 472