National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24                           1      
T     12                                  
V     39                                  
Y     12                                 1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Thailand 26245 A 530 530
1 Thailand 26246 T 530 530
2 Thailand 26247 G 530 530
3 Thailand 26248 T 530 530
4 Thailand 26249 A 530 530
5 Thailand 26250 C 530 530
6 Thailand 26251 T 530 530
7 Thailand 26252 C 530 530
8 Thailand 26253 A 530 530
9 Thailand 26254 T 530 530
10 Thailand 26255 T 530 530
11 Thailand 26256 C 530 530
12 Thailand 26257 G 530 530
13 Thailand 26258 T 530 529
14 Thailand 26259 T 530 530
15 Thailand 26260 T 530 530
16 Thailand 26261 C 530 530
17 Thailand 26262 G A 530 529 Ser6Ser
18 Thailand 26263 G 530 530
19 Thailand 26264 A 530 530
20 Thailand 26265 A 530 530
21 Thailand 26266 G 530 530
22 Thailand 26267 A 530 530
23 Thailand 26268 G 530 530
24 Thailand 26269 A 530 530
25 Thailand 26270 C 530 530
26 Thailand 26271 A 530 530
27 Thailand 26272 G 530 530
28 Thailand 26273 G 530 530
29 Thailand 26274 T 530 530
30 Thailand 26275 A 530 530
31 Thailand 26276 C 530 530
32 Thailand 26277 G 530 530
33 Thailand 26278 T 530 530
34 Thailand 26279 T 530 530
35 Thailand 26280 A 530 530
36 Thailand 26281 A 530 530
37 Thailand 26282 T 530 530
38 Thailand 26283 A 530 530
39 Thailand 26284 G 530 530
40 Thailand 26285 T 530 530
41 Thailand 26286 T 530 530
42 Thailand 26287 A 530 530
43 Thailand 26288 A 530 530
44 Thailand 26289 T 530 530
45 Thailand 26290 A 530 530
46 Thailand 26291 G 529 529
47 Thailand 26292 C 529 529
48 Thailand 26293 G 529 529
49 Thailand 26294 T 529 529
50 Thailand 26295 A 529 529
51 Thailand 26296 C 529 529
52 Thailand 26297 T 529 529
53 Thailand 26298 T 529 529
54 Thailand 26299 C 529 529
55 Thailand 26300 T 529 529
56 Thailand 26301 T 529 529
57 Thailand 26302 T 529 529
58 Thailand 26303 T 529 529
59 Thailand 26304 T 529 529
60 Thailand 26305 C 529 529
61 Thailand 26306 T 529 529
62 Thailand 26307 T 529 529
63 Thailand 26308 G 529 529
64 Thailand 26309 C 529 528
65 Thailand 26310 T 529 529
66 Thailand 26311 T 529 529
67 Thailand 26312 T 529 529
68 Thailand 26313 C 529 529
69 Thailand 26314 G 529 529
70 Thailand 26315 T 529 529
71 Thailand 26316 G 529 529
72 Thailand 26317 G 529 529
73 Thailand 26318 T 529 529
74 Thailand 26319 A 529 529
75 Thailand 26320 T 529 529
76 Thailand 26321 T 529 529
77 Thailand 26322 C 529 529
78 Thailand 26323 T 529 529
79 Thailand 26324 T 529 529
80 Thailand 26325 G 529 529
81 Thailand 26326 C 529 529
82 Thailand 26327 T 529 529
83 Thailand 26328 A 529 529
84 Thailand 26329 G 529 529
85 Thailand 26330 T 529 529
86 Thailand 26331 T 529 529
87 Thailand 26332 A 529 529
88 Thailand 26333 C 529 529
89 Thailand 26334 A 529 529
90 Thailand 26335 C 529 529
91 Thailand 26336 T 529 529
92 Thailand 26337 A 529 529
93 Thailand 26338 G 529 529
94 Thailand 26339 C 529 529
95 Thailand 26340 C 529 529
96 Thailand 26341 A 529 529
97 Thailand 26342 T 529 529
98 Thailand 26343 C 529 529
99 Thailand 26344 C 529 529
100 Thailand 26345 T 529 529
101 Thailand 26346 T 529 529
102 Thailand 26347 A 529 529
103 Thailand 26348 C 529 529
104 Thailand 26349 T 529 529
105 Thailand 26350 G 529 529
106 Thailand 26351 C 529 529
107 Thailand 26352 G 529 529
108 Thailand 26353 C 529 529
109 Thailand 26354 T 529 529
110 Thailand 26355 T 529 529
111 Thailand 26356 C 529 529
112 Thailand 26357 G 529 529
113 Thailand 26358 A 529 529
114 Thailand 26359 T 530 530
115 Thailand 26360 T 530 530
116 Thailand 26361 G 530 530
117 Thailand 26362 T 530 530
118 Thailand 26363 G 530 530
119 Thailand 26364 T 530 530
120 Thailand 26365 G 530 530
121 Thailand 26366 C 530 530
122 Thailand 26367 G 530 530
123 Thailand 26368 T 530 530
124 Thailand 26369 A 530 530
125 Thailand 26370 C T 530 528 Tyr42Tyr
126 Thailand 26371 T 530 529
127 Thailand 26372 G 530 530
128 Thailand 26373 C 530 530
129 Thailand 26374 T 530 530
130 Thailand 26375 G 530 530
131 Thailand 26376 C 530 530
132 Thailand 26377 A 530 530
133 Thailand 26378 A 530 530
134 Thailand 26379 T 530 530
135 Thailand 26380 A 530 530
136 Thailand 26381 T 530 530
137 Thailand 26382 T 530 530
138 Thailand 26383 G 530 530
139 Thailand 26384 T 530 530
140 Thailand 26385 T 530 530
141 Thailand 26386 A 530 530
142 Thailand 26387 A 530 530
143 Thailand 26388 C 530 530
144 Thailand 26389 G 530 530
145 Thailand 26390 T 530 530
146 Thailand 26391 G 530 530
147 Thailand 26392 A 530 530
148 Thailand 26393 G 530 530
149 Thailand 26394 T 530 530
150 Thailand 26395 C 530 530
151 Thailand 26396 T 530 530
152 Thailand 26397 T 530 530
153 Thailand 26398 G 530 530
154 Thailand 26399 T 530 530
155 Thailand 26400 A 530 530
156 Thailand 26401 A 530 530
157 Thailand 26402 A 530 530
158 Thailand 26403 A 530 530
159 Thailand 26404 C 530 530
160 Thailand 26405 C 530 530
161 Thailand 26406 T 530 530
162 Thailand 26407 T 530 530
163 Thailand 26408 C 530 530
164 Thailand 26409 T 530 530
165 Thailand 26410 T 530 530
166 Thailand 26411 T 530 530
167 Thailand 26412 T 530 530
168 Thailand 26413 T 530 530
169 Thailand 26414 A 530 530
170 Thailand 26415 C 530 530
171 Thailand 26416 G 530 530
172 Thailand 26417 T 530 530
173 Thailand 26418 T 530 530
174 Thailand 26419 T 530 530
175 Thailand 26420 A 530 530
176 Thailand 26421 C 530 530
177 Thailand 26422 T 530 530
178 Thailand 26423 C 530 530
179 Thailand 26424 T 530 530
180 Thailand 26425 C 530 530
181 Thailand 26426 G 530 530
182 Thailand 26427 T 530 530
183 Thailand 26428 G 530 530
184 Thailand 26429 T 530 530
185 Thailand 26430 T 530 530
186 Thailand 26431 A 530 530
187 Thailand 26432 A 530 530
188 Thailand 26433 A 530 530
189 Thailand 26434 A 530 530
190 Thailand 26435 A 530 530
191 Thailand 26436 T 530 530
192 Thailand 26437 C 530 530
193 Thailand 26438 T 530 530
194 Thailand 26439 G 530 530
195 Thailand 26440 A 530 530
196 Thailand 26441 A 530 530
197 Thailand 26442 T 530 530
198 Thailand 26443 T 530 530
199 Thailand 26444 C 530 530
200 Thailand 26445 T 530 530
201 Thailand 26446 T 530 530
202 Thailand 26447 C 530 530
203 Thailand 26448 T 530 530
204 Thailand 26449 A 530 530
205 Thailand 26450 G 530 530
206 Thailand 26451 A 530 530
207 Thailand 26452 G 530 530
208 Thailand 26453 T 530 530
209 Thailand 26454 T 530 530
210 Thailand 26455 C 530 530
211 Thailand 26456 C 530 530
212 Thailand 26457 T 530 530
213 Thailand 26458 G 530 530
214 Thailand 26459 A 530 530
215 Thailand 26460 T 530 530
216 Thailand 26461 C 530 530
217 Thailand 26462 T 530 530
218 Thailand 26463 T 530 530
219 Thailand 26464 C 530 530
220 Thailand 26465 T 530 530
221 Thailand 26466 G 530 530
222 Thailand 26467 G 530 530
223 Thailand 26468 T 530 530
224 Thailand 26469 C 530 530
225 Thailand 26470 T 530 530
226 Thailand 26471 A 530 530
227 Thailand 26472 A 530 530