National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15         1                        
G     3                                  
I     9                                  
K     6                                  
L     43                 1                
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24                                  
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Taiwan 26245 A 150 150
1 Taiwan 26246 T 150 150
2 Taiwan 26247 G 150 150
3 Taiwan 26248 T 150 150
4 Taiwan 26249 A 150 150
5 Taiwan 26250 C 150 150
6 Taiwan 26251 T 150 150
7 Taiwan 26252 C 150 150
8 Taiwan 26253 A 150 150
9 Taiwan 26254 T 150 150
10 Taiwan 26255 T 150 150
11 Taiwan 26256 C T 150 149 Phe4Phe
12 Taiwan 26257 G 150 150
13 Taiwan 26258 T 150 150
14 Taiwan 26259 T 150 150
15 Taiwan 26260 T 150 150
16 Taiwan 26261 C 150 150
17 Taiwan 26262 G 150 150
18 Taiwan 26263 G 150 150
19 Taiwan 26264 A 150 150
20 Taiwan 26265 A 150 150
21 Taiwan 26266 G 150 150
22 Taiwan 26267 A 150 150
23 Taiwan 26268 G 150 150
24 Taiwan 26269 A 150 150
25 Taiwan 26270 C 150 150
26 Taiwan 26271 A 150 150
27 Taiwan 26272 G 150 150
28 Taiwan 26273 G 150 150
29 Taiwan 26274 T 150 150
30 Taiwan 26275 A 150 150
31 Taiwan 26276 C 150 150
32 Taiwan 26277 G 150 150
33 Taiwan 26278 T 150 150
34 Taiwan 26279 T 150 150
35 Taiwan 26280 A 150 150
36 Taiwan 26281 A 150 150
37 Taiwan 26282 T 150 150
38 Taiwan 26283 A 150 150
39 Taiwan 26284 G 150 150
40 Taiwan 26285 T 150 150
41 Taiwan 26286 T 150 150
42 Taiwan 26287 A 150 150
43 Taiwan 26288 A 150 150
44 Taiwan 26289 T 150 150
45 Taiwan 26290 A 150 150
46 Taiwan 26291 G 150 150
47 Taiwan 26292 C 150 150
48 Taiwan 26293 G 150 150
49 Taiwan 26294 T 150 150
50 Taiwan 26295 A 150 150
51 Taiwan 26296 C 150 150
52 Taiwan 26297 T 150 150
53 Taiwan 26298 T 150 150
54 Taiwan 26299 C 150 150
55 Taiwan 26300 T 150 150
56 Taiwan 26301 T 150 150
57 Taiwan 26302 T 150 150
58 Taiwan 26303 T 150 150
59 Taiwan 26304 T 150 150
60 Taiwan 26305 C 150 150
61 Taiwan 26306 T 150 150
62 Taiwan 26307 T 150 150
63 Taiwan 26308 G 150 150
64 Taiwan 26309 C 150 150
65 Taiwan 26310 T 150 150
66 Taiwan 26311 T 150 150
67 Taiwan 26312 T 150 150
68 Taiwan 26313 C 150 150
69 Taiwan 26314 G 150 150
70 Taiwan 26315 T 150 150
71 Taiwan 26316 G 150 150
72 Taiwan 26317 G 150 150
73 Taiwan 26318 T 150 150
74 Taiwan 26319 A 150 150
75 Taiwan 26320 T 150 150
76 Taiwan 26321 T 150 150
77 Taiwan 26322 C 150 150
78 Taiwan 26323 T 150 150
79 Taiwan 26324 T 150 150
80 Taiwan 26325 G A 150 149 Leu27Leu
81 Taiwan 26326 C 150 150
82 Taiwan 26327 T 150 150
83 Taiwan 26328 A 150 150
84 Taiwan 26329 G 150 150
85 Taiwan 26330 T 150 150
86 Taiwan 26331 T 150 150
87 Taiwan 26332 A 150 150
88 Taiwan 26333 C 150 150
89 Taiwan 26334 A 150 150
90 Taiwan 26335 C 150 150
91 Taiwan 26336 T 150 150
92 Taiwan 26337 A 150 150
93 Taiwan 26338 G 150 150
94 Taiwan 26339 C 150 150
95 Taiwan 26340 C 150 150
96 Taiwan 26341 A 150 150
97 Taiwan 26342 T 150 150
98 Taiwan 26343 C 150 150
99 Taiwan 26344 C 150 150
100 Taiwan 26345 T 150 150
101 Taiwan 26346 T 150 150
102 Taiwan 26347 A 150 150
103 Taiwan 26348 C 150 150
104 Taiwan 26349 T 150 150
105 Taiwan 26350 G 150 150
106 Taiwan 26351 C 150 150
107 Taiwan 26352 G 150 150
108 Taiwan 26353 C 150 150
109 Taiwan 26354 T 150 150
110 Taiwan 26355 T 150 150
111 Taiwan 26356 C 150 150
112 Taiwan 26357 G 150 150
113 Taiwan 26358 A 150 150
114 Taiwan 26359 T 150 150
115 Taiwan 26360 T 150 150
116 Taiwan 26361 G 150 150
117 Taiwan 26362 T 150 150
118 Taiwan 26363 G 150 150
119 Taiwan 26364 T 150 150
120 Taiwan 26365 G 150 150
121 Taiwan 26366 C 150 150
122 Taiwan 26367 G 150 150
123 Taiwan 26368 T 150 150
124 Taiwan 26369 A 150 150
125 Taiwan 26370 C 150 150
126 Taiwan 26371 T 150 150
127 Taiwan 26372 G 150 150
128 Taiwan 26373 C 150 150
129 Taiwan 26374 T 150 150
130 Taiwan 26375 G 150 150
131 Taiwan 26376 C 150 150
132 Taiwan 26377 A 150 150
133 Taiwan 26378 A 150 150
134 Taiwan 26379 T 150 150
135 Taiwan 26380 A 150 150
136 Taiwan 26381 T 150 150
137 Taiwan 26382 T 150 150
138 Taiwan 26383 G 150 150
139 Taiwan 26384 T 150 150
140 Taiwan 26385 T 150 150
141 Taiwan 26386 A 150 150
142 Taiwan 26387 A 150 150
143 Taiwan 26388 C 150 150
144 Taiwan 26389 G 150 150
145 Taiwan 26390 T 150 150
146 Taiwan 26391 G 150 150
147 Taiwan 26392 A 150 150
148 Taiwan 26393 G 150 150
149 Taiwan 26394 T 150 150
150 Taiwan 26395 C 150 150
151 Taiwan 26396 T 150 150
152 Taiwan 26397 T 150 150
153 Taiwan 26398 G 150 150
154 Taiwan 26399 T 150 150
155 Taiwan 26400 A 150 150
156 Taiwan 26401 A 150 150
157 Taiwan 26402 A 150 150
158 Taiwan 26403 A 150 150
159 Taiwan 26404 C 150 150
160 Taiwan 26405 C 150 150
161 Taiwan 26406 T 150 150
162 Taiwan 26407 T 150 150
163 Taiwan 26408 C 150 150
164 Taiwan 26409 T 150 150
165 Taiwan 26410 T 150 150
166 Taiwan 26411 T 150 150
167 Taiwan 26412 T 150 150
168 Taiwan 26413 T 150 150
169 Taiwan 26414 A 150 150
170 Taiwan 26415 C 150 150
171 Taiwan 26416 G 150 150
172 Taiwan 26417 T 150 150
173 Taiwan 26418 T 150 150
174 Taiwan 26419 T 150 150
175 Taiwan 26420 A 150 150
176 Taiwan 26421 C 150 150
177 Taiwan 26422 T 150 150
178 Taiwan 26423 C 150 150
179 Taiwan 26424 T 150 150
180 Taiwan 26425 C 150 150
181 Taiwan 26426 G 150 150
182 Taiwan 26427 T 150 150
183 Taiwan 26428 G 150 150
184 Taiwan 26429 T 150 150
185 Taiwan 26430 T 150 150
186 Taiwan 26431 A 150 150
187 Taiwan 26432 A 150 150
188 Taiwan 26433 A 150 150
189 Taiwan 26434 A 150 150
190 Taiwan 26435 A 150 150
191 Taiwan 26436 T 150 150
192 Taiwan 26437 C 150 150
193 Taiwan 26438 T 150 150
194 Taiwan 26439 G 150 150
195 Taiwan 26440 A 150 150
196 Taiwan 26441 A 150 150
197 Taiwan 26442 T 150 150
198 Taiwan 26443 T 150 150
199 Taiwan 26444 C 150 150
200 Taiwan 26445 T 150 150
201 Taiwan 26446 T 150 150
202 Taiwan 26447 C 150 150
203 Taiwan 26448 T 150 150
204 Taiwan 26449 A 150 150
205 Taiwan 26450 G 150 150
206 Taiwan 26451 A 150 150
207 Taiwan 26452 G 150 150
208 Taiwan 26453 T 150 150
209 Taiwan 26454 T 150 150
210 Taiwan 26455 C 150 150
211 Taiwan 26456 C 150 150
212 Taiwan 26457 T 150 150
213 Taiwan 26458 G 150 150
214 Taiwan 26459 A 150 150
215 Taiwan 26460 T 150 150
216 Taiwan 26461 C 150 150
217 Taiwan 26462 T 150 150
218 Taiwan 26463 T 150 150
219 Taiwan 26464 C 150 150
220 Taiwan 26465 T 150 150
221 Taiwan 26466 G 150 150
222 Taiwan 26467 G 150 150
223 Taiwan 26468 T 150 150
224 Taiwan 26469 C 150 150
225 Taiwan 26470 T 150 150
226 Taiwan 26471 A 150 150
227 Taiwan 26472 A 150 150