National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6     1         1                  
F     15         1                        
G     3                                  
I     9                                  
K     6               1                  
L     43         1       3                
M     3                                  
N     15                                  
P     6                 1       1 1      
R     9                                  
S     24         1                 1      
T     12                             1    
V     39                 1             2  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Sweden 26245 A 1388 1388
1 Sweden 26246 T 1388 1388
2 Sweden 26247 G 1388 1388
3 Sweden 26248 T 1388 1388
4 Sweden 26249 A 1388 1388
5 Sweden 26250 C 1388 1388
6 Sweden 26251 T 1388 1388
7 Sweden 26252 C 1388 1388
8 Sweden 26253 A 1388 1388
9 Sweden 26254 T 1388 1388
10 Sweden 26255 T 1388 1388
11 Sweden 26256 C 1388 1388
12 Sweden 26257 G 1388 1388
13 Sweden 26258 T 1388 1388
14 Sweden 26259 T 1388 1388
15 Sweden 26260 T 1388 1388
16 Sweden 26261 C 1388 1388
17 Sweden 26262 G A 1388 1387 Ser6Ser
18 Sweden 26263 G A 1388 1387 Glu7Lys
19 Sweden 26264 A 1388 1388
20 Sweden 26265 A 1388 1388
21 Sweden 26266 G 1388 1388
22 Sweden 26267 A 1388 1388
23 Sweden 26268 G T 1388 1387 Glu8Asp
24 Sweden 26269 A 1388 1388
25 Sweden 26270 C 1388 1388
26 Sweden 26271 A 1388 1388
27 Sweden 26272 G 1388 1388
28 Sweden 26273 G 1388 1388
29 Sweden 26274 T 1388 1388
30 Sweden 26275 A 1388 1388
31 Sweden 26276 C 1388 1388
32 Sweden 26277 G T 1388 1385 Thr11Thr
33 Sweden 26278 T 1388 1388
34 Sweden 26279 T 1388 1388
35 Sweden 26280 A 1388 1388
36 Sweden 26281 A 1388 1388
37 Sweden 26282 T 1388 1388
38 Sweden 26283 A 1388 1388
39 Sweden 26284 G 1388 1388
40 Sweden 26285 T 1388 1388
41 Sweden 26286 T 1388 1388
42 Sweden 26287 A 1388 1388
43 Sweden 26288 A 1388 1388
44 Sweden 26289 T 1388 1388
45 Sweden 26290 A 1388 1388
46 Sweden 26291 G 1388 1388
47 Sweden 26292 C 1388 1388
48 Sweden 26293 G 1388 1388
49 Sweden 26294 T 1388 1388
50 Sweden 26295 A 1388 1388
51 Sweden 26296 C 1388 1388
52 Sweden 26297 T 1388 1388
53 Sweden 26298 T 1388 1388
54 Sweden 26299 C 1388 1388
55 Sweden 26300 T 1388 1388
56 Sweden 26301 T G,C 1388 1386 Leu19Leu-p.Leu19Leu
57 Sweden 26302 T 1388 1388
58 Sweden 26303 T 1388 1388
59 Sweden 26304 T 1388 1388
60 Sweden 26305 C 1388 1388
61 Sweden 26306 T 1388 1388
62 Sweden 26307 T 1388 1388
63 Sweden 26308 G 1388 1388
64 Sweden 26309 C 1388 1388
65 Sweden 26310 T 1388 1388
66 Sweden 26311 T 1388 1388
67 Sweden 26312 T 1388 1388
68 Sweden 26313 C T 1388 1384 Phe23Phe
69 Sweden 26314 G 1388 1388
70 Sweden 26315 T 1388 1388
71 Sweden 26316 G 1388 1388
72 Sweden 26317 G 1388 1388
73 Sweden 26318 T 1388 1388
74 Sweden 26319 A G 1388 1386 Val25Val
75 Sweden 26320 T 1388 1388
76 Sweden 26321 T 1388 1388
77 Sweden 26322 C 1388 1388
78 Sweden 26323 T 1388 1388
79 Sweden 26324 T 1388 1388
80 Sweden 26325 G 1388 1388
81 Sweden 26326 C 1388 1388
82 Sweden 26327 T 1388 1388
83 Sweden 26328 A 1388 1388
84 Sweden 26329 G 1388 1388
85 Sweden 26330 T 1388 1388
86 Sweden 26331 T 1388 1388
87 Sweden 26332 A 1388 1388
88 Sweden 26333 C 1388 1388
89 Sweden 26334 A 1388 1388
90 Sweden 26335 C 1388 1388
91 Sweden 26336 T 1388 1388
92 Sweden 26337 A 1388 1388
93 Sweden 26338 G 1388 1388
94 Sweden 26339 C 1388 1388
95 Sweden 26340 C 1388 1388
96 Sweden 26341 A 1388 1388
97 Sweden 26342 T 1388 1388
98 Sweden 26343 C 1388 1388
99 Sweden 26344 C 1388 1388
100 Sweden 26345 T 1388 1388
101 Sweden 26346 T 1388 1388
102 Sweden 26347 A 1388 1388
103 Sweden 26348 C 1388 1388
104 Sweden 26349 T 1388 1388
105 Sweden 26350 G 1388 1388
106 Sweden 26351 C 1388 1388
107 Sweden 26352 G 1388 1388
108 Sweden 26353 C 1388 1388
109 Sweden 26354 T 1388 1388
110 Sweden 26355 T 1388 1388
111 Sweden 26356 C 1388 1388
112 Sweden 26357 G 1388 1388
113 Sweden 26358 A 1388 1388
114 Sweden 26359 T 1388 1388
115 Sweden 26360 T 1388 1388
116 Sweden 26361 G 1388 1388
117 Sweden 26362 T 1388 1388
118 Sweden 26363 G 1388 1388
119 Sweden 26364 T 1388 1388
120 Sweden 26365 G 1388 1388
121 Sweden 26366 C 1388 1388
122 Sweden 26367 G 1388 1388
123 Sweden 26368 T 1388 1388
124 Sweden 26369 A 1388 1388
125 Sweden 26370 C 1388 1388
126 Sweden 26371 T 1388 1388
127 Sweden 26372 G 1388 1388
128 Sweden 26373 C 1388 1388
129 Sweden 26374 T 1388 1388
130 Sweden 26375 G 1388 1388
131 Sweden 26376 C 1388 1388
132 Sweden 26377 A 1388 1388
133 Sweden 26378 A 1388 1388
134 Sweden 26379 T 1388 1388
135 Sweden 26380 A 1388 1388
136 Sweden 26381 T 1388 1388
137 Sweden 26382 T 1388 1388
138 Sweden 26383 G 1388 1388
139 Sweden 26384 T 1388 1388
140 Sweden 26385 T 1388 1388
141 Sweden 26386 A 1388 1388
142 Sweden 26387 A 1388 1388
143 Sweden 26388 C 1388 1388
144 Sweden 26389 G 1388 1388
145 Sweden 26390 T 1388 1388
146 Sweden 26391 G 1388 1388
147 Sweden 26392 A 1388 1388
148 Sweden 26393 G 1388 1388
149 Sweden 26394 T 1388 1388
150 Sweden 26395 C 1388 1388
151 Sweden 26396 T 1388 1388
152 Sweden 26397 T 1388 1388
153 Sweden 26398 G T 1388 1387 Val52Leu
154 Sweden 26399 T 1388 1388
155 Sweden 26400 A 1388 1388
156 Sweden 26401 A 1388 1388
157 Sweden 26402 A 1388 1388
158 Sweden 26403 A 1388 1388
159 Sweden 26404 C 1388 1388
160 Sweden 26405 C 1388 1388
161 Sweden 26406 T 1388 1388
162 Sweden 26407 T 1388 1388
163 Sweden 26408 C 1388 1388
164 Sweden 26409 T 1388 1388
165 Sweden 26410 T 1388 1388
166 Sweden 26411 T 1388 1388
167 Sweden 26412 T 1388 1388
168 Sweden 26413 T 1388 1388
169 Sweden 26414 A 1388 1388
170 Sweden 26415 C 1388 1388
171 Sweden 26416 G 1388 1388
172 Sweden 26417 T 1388 1388
173 Sweden 26418 T 1388 1388
174 Sweden 26419 T 1388 1388
175 Sweden 26420 A 1388 1388
176 Sweden 26421 C 1388 1388
177 Sweden 26422 T 1388 1388
178 Sweden 26423 C 1388 1388
179 Sweden 26424 T 1388 1388
180 Sweden 26425 C 1388 1388
181 Sweden 26426 G 1388 1388
182 Sweden 26427 T 1388 1388
183 Sweden 26428 G 1388 1388
184 Sweden 26429 T 1388 1388
185 Sweden 26430 T 1388 1388
186 Sweden 26431 A 1388 1388
187 Sweden 26432 A 1388 1388
188 Sweden 26433 A G 1388 1387 Lys63Lys
189 Sweden 26434 A 1388 1388
190 Sweden 26435 A 1388 1388
191 Sweden 26436 T 1388 1388
192 Sweden 26437 C 1388 1388
193 Sweden 26438 T 1388 1388
194 Sweden 26439 G 1388 1388
195 Sweden 26440 A 1388 1388
196 Sweden 26441 A 1388 1388
197 Sweden 26442 T 1388 1388
198 Sweden 26443 T 1388 1388
199 Sweden 26444 C 1388 1388
200 Sweden 26445 T 1388 1388
201 Sweden 26446 T 1388 1388
202 Sweden 26447 C T 1388 1342 Ser68Phe
203 Sweden 26448 T 1388 1388
204 Sweden 26449 A 1388 1388
205 Sweden 26450 G 1388 1388
206 Sweden 26451 A 1388 1388
207 Sweden 26452 G 1388 1388
208 Sweden 26453 T 1388 1388
209 Sweden 26454 T 1388 1388
210 Sweden 26455 C T 1388 1384 Pro71Ser
211 Sweden 26456 C T,G 1388 1382 Pro71Leu-p.Pro71Arg
212 Sweden 26457 T 1388 1388
213 Sweden 26458 G 1388 1388
214 Sweden 26459 A 1388 1388
215 Sweden 26460 T 1388 1388
216 Sweden 26461 C T 1388 1387 Leu73Phe
217 Sweden 26462 T 1388 1388
218 Sweden 26463 T 1388 1388
219 Sweden 26464 C T 1388 1387 Leu74Leu
220 Sweden 26465 T 1388 1388
221 Sweden 26466 G 1388 1388
222 Sweden 26467 G 1388 1388
223 Sweden 26468 T 1388 1388
224 Sweden 26469 C T 1388 1387 Val75Val
225 Sweden 26470 T 1388 1388
226 Sweden 26471 A 1388 1388
227 Sweden 26472 A 1388 1388