National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P R S T V Y
*     2                                    
-     228                                    
?                                          
A     12                                    
C     9                                    
D     3                                    
E     6                                    
F     15         1         1                
G     3                                    
H                                          
I     9                                    
K     6                                    
L     43         1   1                      
M     3                                    
N     15                                    
P     6                   1                
R     9                                    
S     24                   1         1      
T     12               1                    
V     39                                    
Y     12                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 South_Korea 26245 A 1631 1631
1 South_Korea 26246 T 1631 1631
2 South_Korea 26247 G 1631 1631
3 South_Korea 26248 T 1631 1631
4 South_Korea 26249 A 1631 1631
5 South_Korea 26250 C 1631 1631
6 South_Korea 26251 T 1631 1631
7 South_Korea 26252 C 1631 1631
8 South_Korea 26253 A 1631 1631
9 South_Korea 26254 T 1631 1631
10 South_Korea 26255 T 1631 1631
11 South_Korea 26256 C T 1631 1629 Phe4Phe
12 South_Korea 26257 G 1631 1631
13 South_Korea 26258 T 1631 1631
14 South_Korea 26259 T 1631 1631
15 South_Korea 26260 T 1631 1631
16 South_Korea 26261 C T 1631 1630 Ser6Leu
17 South_Korea 26262 G 1631 1631
18 South_Korea 26263 G 1631 1631
19 South_Korea 26264 A 1631 1631
20 South_Korea 26265 A 1631 1631
21 South_Korea 26266 G 1631 1631
22 South_Korea 26267 A 1631 1631
23 South_Korea 26268 G 1631 1631
24 South_Korea 26269 A 1631 1631
25 South_Korea 26270 C T 1631 1630 Thr9Ile
26 South_Korea 26271 A 1631 1631
27 South_Korea 26272 G 1631 1631
28 South_Korea 26273 G 1631 1631
29 South_Korea 26274 T 1631 1631
30 South_Korea 26275 A 1631 1631
31 South_Korea 26276 C 1631 1631
32 South_Korea 26277 G 1631 1631
33 South_Korea 26278 T 1631 1631
34 South_Korea 26279 T 1631 1631
35 South_Korea 26280 A 1631 1631
36 South_Korea 26281 A 1631 1631
37 South_Korea 26282 T 1631 1631
38 South_Korea 26283 A 1631 1631
39 South_Korea 26284 G 1631 1631
40 South_Korea 26285 T 1631 1631
41 South_Korea 26286 T 1631 1631
42 South_Korea 26287 A 1631 1631
43 South_Korea 26288 A 1631 1631
44 South_Korea 26289 T 1631 1631
45 South_Korea 26290 A 1631 1631
46 South_Korea 26291 G 1631 1631
47 South_Korea 26292 C T 1631 1630 Ser16Ser
48 South_Korea 26293 G 1631 1631
49 South_Korea 26294 T 1631 1631
50 South_Korea 26295 A 1631 1631
51 South_Korea 26296 C 1631 1631
52 South_Korea 26297 T 1631 1631
53 South_Korea 26298 T 1631 1631
54 South_Korea 26299 C 1631 1631
55 South_Korea 26300 T 1631 1631
56 South_Korea 26301 T 1631 1631
57 South_Korea 26302 T 1631 1631
58 South_Korea 26303 T 1631 1631
59 South_Korea 26304 T 1631 1631
60 South_Korea 26305 C T 1631 1628 Leu21Phe
61 South_Korea 26306 T 1631 1631
62 South_Korea 26307 T 1631 1631
63 South_Korea 26308 G 1631 1631
64 South_Korea 26309 C 1631 1631
65 South_Korea 26310 T 1631 1631
66 South_Korea 26311 T 1631 1631
67 South_Korea 26312 T 1631 1631
68 South_Korea 26313 C A 1631 1624 Phe23Leu
69 South_Korea 26314 G 1631 1631
70 South_Korea 26315 T 1631 1631
71 South_Korea 26316 G 1631 1631
72 South_Korea 26317 G 1631 1631
73 South_Korea 26318 T 1631 1631
74 South_Korea 26319 A 1631 1631
75 South_Korea 26320 T 1631 1631
76 South_Korea 26321 T 1631 1631
77 South_Korea 26322 C 1631 1631
78 South_Korea 26323 T 1631 1631
79 South_Korea 26324 T 1631 1631
80 South_Korea 26325 G 1631 1631
81 South_Korea 26326 C 1631 1631
82 South_Korea 26327 T 1631 1631
83 South_Korea 26328 A 1631 1631
84 South_Korea 26329 G 1631 1631
85 South_Korea 26330 T 1631 1631
86 South_Korea 26331 T 1631 1631
87 South_Korea 26332 A 1631 1631
88 South_Korea 26333 C 1631 1631
89 South_Korea 26334 A 1631 1631
90 South_Korea 26335 C 1631 1631
91 South_Korea 26336 T 1631 1631
92 South_Korea 26337 A 1631 1631
93 South_Korea 26338 G 1631 1631
94 South_Korea 26339 C 1631 1631
95 South_Korea 26340 C 1631 1631
96 South_Korea 26341 A 1631 1631
97 South_Korea 26342 T 1631 1631
98 South_Korea 26343 C 1631 1631
99 South_Korea 26344 C 1631 1631
100 South_Korea 26345 T 1631 1631
101 South_Korea 26346 T 1631 1631
102 South_Korea 26347 A 1631 1631
103 South_Korea 26348 C 1631 1631
104 South_Korea 26349 T 1631 1631
105 South_Korea 26350 G 1631 1631
106 South_Korea 26351 C 1631 1631
107 South_Korea 26352 G 1631 1631
108 South_Korea 26353 C 1631 1631
109 South_Korea 26354 T A 1631 1630 Leu37His
110 South_Korea 26355 T 1631 1631
111 South_Korea 26356 C 1631 1631
112 South_Korea 26357 G 1631 1631
113 South_Korea 26358 A 1631 1631
114 South_Korea 26359 T 1631 1631
115 South_Korea 26360 T 1631 1631
116 South_Korea 26361 G 1631 1631
117 South_Korea 26362 T 1631 1631
118 South_Korea 26363 G 1631 1631
119 South_Korea 26364 T 1631 1631
120 South_Korea 26365 G 1631 1631
121 South_Korea 26366 C 1631 1631
122 South_Korea 26367 G 1631 1631
123 South_Korea 26368 T 1631 1631
124 South_Korea 26369 A 1631 1631
125 South_Korea 26370 C 1631 1631
126 South_Korea 26371 T 1632 1632
127 South_Korea 26372 G 1632 1632
128 South_Korea 26373 C 1632 1632
129 South_Korea 26374 T 1632 1632
130 South_Korea 26375 G 1632 1632
131 South_Korea 26376 C 1632 1632
132 South_Korea 26377 A 1632 1632
133 South_Korea 26378 A 1632 1632
134 South_Korea 26379 T 1632 1632
135 South_Korea 26380 A 1632 1632
136 South_Korea 26381 T 1632 1632
137 South_Korea 26382 T 1632 1632
138 South_Korea 26383 G 1632 1632
139 South_Korea 26384 T 1632 1632
140 South_Korea 26385 T 1632 1632
141 South_Korea 26386 A 1632 1632
142 South_Korea 26387 A 1632 1632
143 South_Korea 26388 C 1632 1632
144 South_Korea 26389 G 1632 1632
145 South_Korea 26390 T 1632 1632
146 South_Korea 26391 G 1632 1632
147 South_Korea 26392 A 1632 1632
148 South_Korea 26393 G 1632 1632
149 South_Korea 26394 T 1632 1632
150 South_Korea 26395 C 1632 1632
151 South_Korea 26396 T 1632 1632
152 South_Korea 26397 T 1632 1632
153 South_Korea 26398 G 1632 1632
154 South_Korea 26399 T 1632 1632
155 South_Korea 26400 A 1632 1632
156 South_Korea 26401 A 1632 1632
157 South_Korea 26402 A 1632 1632
158 South_Korea 26403 A 1632 1632
159 South_Korea 26404 C 1632 1632
160 South_Korea 26405 C 1632 1632
161 South_Korea 26406 T 1632 1632
162 South_Korea 26407 T 1632 1632
163 South_Korea 26408 C 1632 1632
164 South_Korea 26409 T 1632 1632
165 South_Korea 26410 T 1632 1632
166 South_Korea 26411 T 1632 1632
167 South_Korea 26412 T 1632 1632
168 South_Korea 26413 T 1632 1632
169 South_Korea 26414 A 1632 1632
170 South_Korea 26415 C 1632 1632
171 South_Korea 26416 G 1632 1632
172 South_Korea 26417 T 1632 1632
173 South_Korea 26418 T 1632 1632
174 South_Korea 26419 T 1632 1632
175 South_Korea 26420 A 1632 1632
176 South_Korea 26421 C 1632 1632
177 South_Korea 26422 T 1632 1632
178 South_Korea 26423 C 1632 1632
179 South_Korea 26424 T 1632 1632
180 South_Korea 26425 C 1632 1632
181 South_Korea 26426 G 1632 1632
182 South_Korea 26427 T 1632 1632
183 South_Korea 26428 G 1632 1632
184 South_Korea 26429 T 1632 1632
185 South_Korea 26430 T 1632 1632
186 South_Korea 26431 A 1632 1632
187 South_Korea 26432 A 1632 1632
188 South_Korea 26433 A 1632 1632
189 South_Korea 26434 A 1632 1632
190 South_Korea 26435 A 1632 1632
191 South_Korea 26436 T 1632 1632
192 South_Korea 26437 C 1632 1632
193 South_Korea 26438 T 1632 1632
194 South_Korea 26439 G 1632 1632
195 South_Korea 26440 A 1632 1632
196 South_Korea 26441 A 1632 1632
197 South_Korea 26442 T 1632 1632
198 South_Korea 26443 T 1632 1632
199 South_Korea 26444 C 1632 1632
200 South_Korea 26445 T 1632 1632
201 South_Korea 26446 T 1632 1632
202 South_Korea 26447 C 1632 1632
203 South_Korea 26448 T 1632 1632
204 South_Korea 26449 A 1632 1632
205 South_Korea 26450 G 1632 1632
206 South_Korea 26451 A 1632 1632
207 South_Korea 26452 G 1632 1632
208 South_Korea 26453 T 1632 1632
209 South_Korea 26454 T 1632 1632
210 South_Korea 26455 C 1632 1632
211 South_Korea 26456 C T 1632 1631 Pro71Leu
212 South_Korea 26457 T 1632 1632
213 South_Korea 26458 G 1632 1632
214 South_Korea 26459 A 1632 1632
215 South_Korea 26460 T 1632 1632
216 South_Korea 26461 C 1632 1632
217 South_Korea 26462 T 1632 1632
218 South_Korea 26463 T 1632 1632
219 South_Korea 26464 C 1632 1632
220 South_Korea 26465 T 1632 1632
221 South_Korea 26466 G 1632 1632
222 South_Korea 26467 G 1632 1632
223 South_Korea 26468 T 1632 1632
224 South_Korea 26469 C 1632 1632
225 South_Korea 26470 T 1632 1632
226 South_Korea 26471 A 1632 1632
227 South_Korea 26472 A 1632 1632