National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12 2         1                      
C     9         1                       1
D     3                                 1
E     6                                  
F     15         3                        
G     3                                  
I     9                                  
K     6                                  
L     43         2       2     2          
M     3                                  
N     15                                  
P     6                 1                
R     9             1                    
S     24         2                 2      
T     12             1                    
V     39         3       1 1           3  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 South_Africa 26245 A 3062 3062
1 South_Africa 26246 T 3062 3062
2 South_Africa 26247 G 3062 3062
3 South_Africa 26248 T 3062 3062
4 South_Africa 26249 A 3062 3062
5 South_Africa 26250 C 3062 3062
6 South_Africa 26251 T 3062 3062
7 South_Africa 26252 C 3062 3062
8 South_Africa 26253 A 3062 3062
9 South_Africa 26254 T 3062 3062
10 South_Africa 26255 T 3062 3062
11 South_Africa 26256 C T 3062 3060 Phe4Phe
12 South_Africa 26257 G T 3062 3061 Val5Phe
13 South_Africa 26258 T 3062 3062
14 South_Africa 26259 T 3062 3062
15 South_Africa 26260 T 3062 3062
16 South_Africa 26261 C 3062 3062
17 South_Africa 26262 G T 3062 3058 Ser6Ser
18 South_Africa 26263 G 3062 3062
19 South_Africa 26264 A 3062 3062
20 South_Africa 26265 A 3062 3062
21 South_Africa 26266 G 3062 3062
22 South_Africa 26267 A 3062 3062
23 South_Africa 26268 G 3062 3062
24 South_Africa 26269 A 3062 3062
25 South_Africa 26270 C 3062 3062
26 South_Africa 26271 A 3062 3062
27 South_Africa 26272 G 3062 3062
28 South_Africa 26273 G 3062 3062
29 South_Africa 26274 T 3062 3062
30 South_Africa 26275 A 3062 3062
31 South_Africa 26276 C 3062 3062
32 South_Africa 26277 G 3062 3062
33 South_Africa 26278 T 3062 3062
34 South_Africa 26279 T 3062 3062
35 South_Africa 26280 A 3062 3062
36 South_Africa 26281 A 3062 3062
37 South_Africa 26282 T 3062 3062
38 South_Africa 26283 A 3062 3062
39 South_Africa 26284 G 3062 3062
40 South_Africa 26285 T 3062 3062
41 South_Africa 26286 T 3062 3062
42 South_Africa 26287 A 3062 3062
43 South_Africa 26288 A 3062 3062
44 South_Africa 26289 T 3062 3062
45 South_Africa 26290 A 3062 3062
46 South_Africa 26291 G 3062 3062
47 South_Africa 26292 C 3061 3061
48 South_Africa 26293 G 3061 3061
49 South_Africa 26294 T 3061 3061
50 South_Africa 26295 A 3061 3061
51 South_Africa 26296 C 3061 3061
52 South_Africa 26297 T 3061 3061
53 South_Africa 26298 T 3061 3061
54 South_Africa 26299 C 3061 3061
55 South_Africa 26300 T 3061 3061
56 South_Africa 26301 T 3061 3061
57 South_Africa 26302 T 3061 3061
58 South_Africa 26303 T 3061 3061
59 South_Africa 26304 T 3061 3061
60 South_Africa 26305 C T 3061 3059 Leu21Phe
61 South_Africa 26306 T C 3061 3060 Leu21Pro
62 South_Africa 26307 T 3060 3059
63 South_Africa 26308 G 3060 3059
64 South_Africa 26309 C 3058 3056
65 South_Africa 26310 T 3058 3055
66 South_Africa 26311 T 3058 3054
67 South_Africa 26312 T 3057 3053
68 South_Africa 26313 C T 3057 3029 Phe23Phe
69 South_Africa 26314 G A 3057 3052 Val24Met
70 South_Africa 26315 T 3057 3054
71 South_Africa 26316 G 3057 3053
72 South_Africa 26317 G 3057 3053
73 South_Africa 26318 T 3057 3053
74 South_Africa 26319 A G 3057 3052 Val25Val
75 South_Africa 26320 T 3057 3052
76 South_Africa 26321 T 3057 3052
77 South_Africa 26322 C T 3057 3051 Phe26Phe
78 South_Africa 26323 T 3057 3052
79 South_Africa 26324 T 3057 3052
80 South_Africa 26325 G 3057 3052
81 South_Africa 26326 C 3057 3052
82 South_Africa 26327 T 3057 3053
83 South_Africa 26328 A 3057 3053
84 South_Africa 26329 G 3057 3053
85 South_Africa 26330 T 3057 3053
86 South_Africa 26331 T 3057 3052
87 South_Africa 26332 A 3057 3053
88 South_Africa 26333 C T 3057 3051 Thr30Ile
89 South_Africa 26334 A 3057 3053
90 South_Africa 26335 C 3057 3053
91 South_Africa 26336 T 3057 3053
92 South_Africa 26337 A 3056 3052
93 South_Africa 26338 G 3056 3053
94 South_Africa 26339 C 3056 3053
95 South_Africa 26340 C T 3056 3051 Ala32Ala
96 South_Africa 26341 A 3056 3053
97 South_Africa 26342 T 3056 3054
98 South_Africa 26343 C 3056 3054
99 South_Africa 26344 C 3056 3054
100 South_Africa 26345 T 3057 3055
101 South_Africa 26346 T 3057 3055
102 South_Africa 26347 A 3057 3055
103 South_Africa 26348 C 3057 3055
104 South_Africa 26349 T 3057 3055
105 South_Africa 26350 G 3057 3055
106 South_Africa 26351 C 3056 3054
107 South_Africa 26352 G 3056 3055
108 South_Africa 26353 C 3056 3055
109 South_Africa 26354 T 3056 3055
110 South_Africa 26355 T 3056 3055
111 South_Africa 26356 C 3056 3055
112 South_Africa 26357 G 3056 3055
113 South_Africa 26358 A 3056 3055
114 South_Africa 26359 T 3056 3055
115 South_Africa 26360 T 3056 3055
116 South_Africa 26361 G 3056 3055
117 South_Africa 26362 T 3056 3055
118 South_Africa 26363 G 3056 3055
119 South_Africa 26364 T 3056 3055
120 South_Africa 26365 G 3056 3055
121 South_Africa 26366 C G 3056 3055 Ala41Gly
122 South_Africa 26367 G C 3056 3055 Ala41Ala
123 South_Africa 26368 T 3055 3055
124 South_Africa 26369 A 3055 3055
125 South_Africa 26370 C 3055 3055
126 South_Africa 26371 T 3055 3055
127 South_Africa 26372 G T 3055 3054 Cys43Phe
128 South_Africa 26373 C 3055 3055
129 South_Africa 26374 T 3055 3054
130 South_Africa 26375 G A 3055 3053 Cys44Tyr
131 South_Africa 26376 C 3055 3054
132 South_Africa 26377 A 3055 3054
133 South_Africa 26378 A 3055 3054
134 South_Africa 26379 T 3056 3055
135 South_Africa 26380 A 3056 3055
136 South_Africa 26381 T 3056 3054
137 South_Africa 26382 T 3056 3054
138 South_Africa 26383 G T 3056 3053 Val47Phe
139 South_Africa 26384 T 3056 3054
140 South_Africa 26385 T 3056 3054
141 South_Africa 26386 A 3056 3054
142 South_Africa 26387 A 3056 3054
143 South_Africa 26388 C 3056 3054
144 South_Africa 26389 G T 3056 3052 Val49Leu
145 South_Africa 26390 T 3056 3054
146 South_Africa 26391 G 3056 3054
147 South_Africa 26392 A 3056 3054
148 South_Africa 26393 G 3056 3054
149 South_Africa 26394 T 3056 3054
150 South_Africa 26395 C 3056 3054
151 South_Africa 26396 T 3056 3054
152 South_Africa 26397 T 3056 3054
153 South_Africa 26398 G 3056 3054
154 South_Africa 26399 T 3056 3054
155 South_Africa 26400 A G 3056 3053 Val52Val
156 South_Africa 26401 A 3056 3054
157 South_Africa 26402 A 3057 3056
158 South_Africa 26403 A 3057 3056
159 South_Africa 26404 C 3057 3056
160 South_Africa 26405 C 3057 3056
161 South_Africa 26406 T 3057 3056
162 South_Africa 26407 T 3057 3056
163 South_Africa 26408 C T 3057 3056 Ser55Phe
164 South_Africa 26409 T 3057 3057
165 South_Africa 26410 T 3057 3057
166 South_Africa 26411 T 3057 3057
167 South_Africa 26412 T 3057 3057
168 South_Africa 26413 T 3057 3057
169 South_Africa 26414 A 3057 3057
170 South_Africa 26415 C 3057 3057
171 South_Africa 26416 G 3057 3057
172 South_Africa 26417 T 3057 3057
173 South_Africa 26418 T 3057 3057
174 South_Africa 26419 T 3057 3057
175 South_Africa 26420 A 3057 3057
176 South_Africa 26421 C 3057 3057
177 South_Africa 26422 T 3057 3057
178 South_Africa 26423 C 3057 3057
179 South_Africa 26424 T 3057 3057
180 South_Africa 26425 C 3057 3057
181 South_Africa 26426 G 3057 3057
182 South_Africa 26427 T 3057 3057
183 South_Africa 26428 G T 3057 3056 Val62Phe
184 South_Africa 26429 T 3057 3057
185 South_Africa 26430 T 3057 3057
186 South_Africa 26431 A 3057 3057
187 South_Africa 26432 A 3057 3057
188 South_Africa 26433 A 3057 3057
189 South_Africa 26434 A 3056 3056
190 South_Africa 26435 A 3056 3056
191 South_Africa 26436 T 3056 3056
192 South_Africa 26437 C 3056 3056
193 South_Africa 26438 T 3056 3056
194 South_Africa 26439 G 3056 3056
195 South_Africa 26440 A 3056 3056
196 South_Africa 26441 A 3056 3056
197 South_Africa 26442 T 3056 3056
198 South_Africa 26443 T 3056 3056
199 South_Africa 26444 C 3056 3056
200 South_Africa 26445 T 3056 3056
201 South_Africa 26446 T 3056 3056
202 South_Africa 26447 C T 3056 3055 Ser68Phe
203 South_Africa 26448 T G 3056 3055 Ser68Ser
204 South_Africa 26449 A 3056 3056
205 South_Africa 26450 G T 3056 3053 Arg69Ile
206 South_Africa 26451 A 3056 3056
207 South_Africa 26452 G 3056 3056
208 South_Africa 26453 T 3056 3056
209 South_Africa 26454 T 3056 3056
210 South_Africa 26455 C 3056 3056
211 South_Africa 26456 C T 3056 2540 Pro71Leu
212 South_Africa 26457 T 3056 3056
213 South_Africa 26458 G T 3056 3054 Asp72Tyr
214 South_Africa 26459 A 3056 3056
215 South_Africa 26460 T 3056 3056
216 South_Africa 26461 C T 3056 3045 Leu73Phe
217 South_Africa 26462 T C 3056 3041 Leu73Pro
218 South_Africa 26463 T G 3056 3055 Leu73Leu
219 South_Africa 26464 C T 3056 3055 Leu74Leu
220 South_Africa 26465 T 3056 3056
221 South_Africa 26466 G 3056 3056
222 South_Africa 26467 G 3056 3056
223 South_Africa 26468 T 3056 3056
224 South_Africa 26469 C T 3056 3055 Val75Val
225 South_Africa 26470 T 3056 3056
226 South_Africa 26471 A 3056 3056
227 South_Africa 26472 A 3056 3056