National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15         1                        
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24                 1                
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Slovakia 26245 A 96 96
1 Slovakia 26246 T 96 96
2 Slovakia 26247 G 96 96
3 Slovakia 26248 T 96 96
4 Slovakia 26249 A 96 96
5 Slovakia 26250 C 96 96
6 Slovakia 26251 T 96 96
7 Slovakia 26252 C T 96 95 Ser3Leu
8 Slovakia 26253 A 96 96
9 Slovakia 26254 T 96 96
10 Slovakia 26255 T 96 96
11 Slovakia 26256 C 96 96
12 Slovakia 26257 G 96 96
13 Slovakia 26258 T 96 96
14 Slovakia 26259 T 96 96
15 Slovakia 26260 T 96 96
16 Slovakia 26261 C 96 96
17 Slovakia 26262 G 96 96
18 Slovakia 26263 G 96 96
19 Slovakia 26264 A 96 96
20 Slovakia 26265 A 96 96
21 Slovakia 26266 G 96 96
22 Slovakia 26267 A 96 96
23 Slovakia 26268 G 96 96
24 Slovakia 26269 A 96 96
25 Slovakia 26270 C 96 96
26 Slovakia 26271 A 96 96
27 Slovakia 26272 G 96 96
28 Slovakia 26273 G 96 96
29 Slovakia 26274 T 96 96
30 Slovakia 26275 A 96 96
31 Slovakia 26276 C 96 96
32 Slovakia 26277 G 96 96
33 Slovakia 26278 T 96 96
34 Slovakia 26279 T 96 96
35 Slovakia 26280 A 96 96
36 Slovakia 26281 A 96 96
37 Slovakia 26282 T 96 96
38 Slovakia 26283 A 96 96
39 Slovakia 26284 G 96 96
40 Slovakia 26285 T 96 96
41 Slovakia 26286 T 96 96
42 Slovakia 26287 A 96 96
43 Slovakia 26288 A 96 96
44 Slovakia 26289 T 96 96
45 Slovakia 26290 A 96 96
46 Slovakia 26291 G 96 96
47 Slovakia 26292 C 96 96
48 Slovakia 26293 G 96 96
49 Slovakia 26294 T 96 96
50 Slovakia 26295 A 96 96
51 Slovakia 26296 C 96 96
52 Slovakia 26297 T 96 96
53 Slovakia 26298 T 96 96
54 Slovakia 26299 C 96 96
55 Slovakia 26300 T 96 96
56 Slovakia 26301 T 96 96
57 Slovakia 26302 T 96 96
58 Slovakia 26303 T 96 96
59 Slovakia 26304 T 96 96
60 Slovakia 26305 C 96 96
61 Slovakia 26306 T 96 96
62 Slovakia 26307 T 96 96
63 Slovakia 26308 G 96 96
64 Slovakia 26309 C 96 96
65 Slovakia 26310 T 96 96
66 Slovakia 26311 T 96 96
67 Slovakia 26312 T 96 96
68 Slovakia 26313 C T 96 95 Phe23Phe
69 Slovakia 26314 G 96 96
70 Slovakia 26315 T 96 96
71 Slovakia 26316 G 96 96
72 Slovakia 26317 G 96 96
73 Slovakia 26318 T 96 96
74 Slovakia 26319 A 96 96
75 Slovakia 26320 T 96 96
76 Slovakia 26321 T 96 96
77 Slovakia 26322 C 96 96
78 Slovakia 26323 T 96 96
79 Slovakia 26324 T 96 96
80 Slovakia 26325 G 96 96
81 Slovakia 26326 C 96 96
82 Slovakia 26327 T 96 96
83 Slovakia 26328 A 96 96
84 Slovakia 26329 G 96 96
85 Slovakia 26330 T 96 96
86 Slovakia 26331 T 96 96
87 Slovakia 26332 A 96 96
88 Slovakia 26333 C 96 96
89 Slovakia 26334 A 96 96
90 Slovakia 26335 C 96 96
91 Slovakia 26336 T 96 96
92 Slovakia 26337 A 96 96
93 Slovakia 26338 G 96 96
94 Slovakia 26339 C 96 96
95 Slovakia 26340 C 96 96
96 Slovakia 26341 A 96 96
97 Slovakia 26342 T 96 96
98 Slovakia 26343 C 96 96
99 Slovakia 26344 C 96 96
100 Slovakia 26345 T 96 96
101 Slovakia 26346 T 96 96
102 Slovakia 26347 A 96 96
103 Slovakia 26348 C 96 96
104 Slovakia 26349 T 96 96
105 Slovakia 26350 G 96 96
106 Slovakia 26351 C 96 96
107 Slovakia 26352 G 96 96
108 Slovakia 26353 C 96 96
109 Slovakia 26354 T 96 96
110 Slovakia 26355 T 96 96
111 Slovakia 26356 C 96 96
112 Slovakia 26357 G 96 96
113 Slovakia 26358 A 96 96
114 Slovakia 26359 T 96 96
115 Slovakia 26360 T 96 96
116 Slovakia 26361 G 96 96
117 Slovakia 26362 T 96 96
118 Slovakia 26363 G 96 96
119 Slovakia 26364 T 96 96
120 Slovakia 26365 G 96 96
121 Slovakia 26366 C 96 96
122 Slovakia 26367 G 96 96
123 Slovakia 26368 T 96 96
124 Slovakia 26369 A 96 96
125 Slovakia 26370 C 96 96
126 Slovakia 26371 T 96 96
127 Slovakia 26372 G 96 96
128 Slovakia 26373 C 96 96
129 Slovakia 26374 T 96 96
130 Slovakia 26375 G 96 96
131 Slovakia 26376 C 96 96
132 Slovakia 26377 A 96 96
133 Slovakia 26378 A 96 96
134 Slovakia 26379 T 96 96
135 Slovakia 26380 A 96 96
136 Slovakia 26381 T 96 96
137 Slovakia 26382 T 96 96
138 Slovakia 26383 G 96 96
139 Slovakia 26384 T 96 96
140 Slovakia 26385 T 96 96
141 Slovakia 26386 A 96 96
142 Slovakia 26387 A 96 96
143 Slovakia 26388 C 96 96
144 Slovakia 26389 G 96 96
145 Slovakia 26390 T 96 96
146 Slovakia 26391 G 96 96
147 Slovakia 26392 A 96 96
148 Slovakia 26393 G 96 96
149 Slovakia 26394 T 96 96
150 Slovakia 26395 C 96 96
151 Slovakia 26396 T 96 96
152 Slovakia 26397 T 96 96
153 Slovakia 26398 G 96 96
154 Slovakia 26399 T 96 96
155 Slovakia 26400 A 96 96
156 Slovakia 26401 A 96 96
157 Slovakia 26402 A 96 96
158 Slovakia 26403 A 96 96
159 Slovakia 26404 C 96 96
160 Slovakia 26405 C 96 96
161 Slovakia 26406 T 96 96
162 Slovakia 26407 T 96 96
163 Slovakia 26408 C 96 96
164 Slovakia 26409 T 96 96
165 Slovakia 26410 T 96 96
166 Slovakia 26411 T 96 96
167 Slovakia 26412 T 96 96
168 Slovakia 26413 T 96 96
169 Slovakia 26414 A 96 96
170 Slovakia 26415 C 96 96
171 Slovakia 26416 G 96 96
172 Slovakia 26417 T 96 96
173 Slovakia 26418 T 96 96
174 Slovakia 26419 T 96 96
175 Slovakia 26420 A 96 96
176 Slovakia 26421 C 96 96
177 Slovakia 26422 T 96 96
178 Slovakia 26423 C 96 96
179 Slovakia 26424 T 96 96
180 Slovakia 26425 C 96 96
181 Slovakia 26426 G 96 96
182 Slovakia 26427 T 96 96
183 Slovakia 26428 G 96 96
184 Slovakia 26429 T 96 96
185 Slovakia 26430 T 96 96
186 Slovakia 26431 A 96 96
187 Slovakia 26432 A 96 96
188 Slovakia 26433 A 96 96
189 Slovakia 26434 A 96 96
190 Slovakia 26435 A 96 96
191 Slovakia 26436 T 96 96
192 Slovakia 26437 C 96 96
193 Slovakia 26438 T 96 96
194 Slovakia 26439 G 96 96
195 Slovakia 26440 A 96 96
196 Slovakia 26441 A 96 96
197 Slovakia 26442 T 96 96
198 Slovakia 26443 T 96 96
199 Slovakia 26444 C 96 96
200 Slovakia 26445 T 96 96
201 Slovakia 26446 T 96 96
202 Slovakia 26447 C 96 96
203 Slovakia 26448 T 96 96
204 Slovakia 26449 A 96 96
205 Slovakia 26450 G 96 96
206 Slovakia 26451 A 96 96
207 Slovakia 26452 G 96 96
208 Slovakia 26453 T 96 96
209 Slovakia 26454 T 96 96
210 Slovakia 26455 C 96 96
211 Slovakia 26456 C 96 96
212 Slovakia 26457 T 96 96
213 Slovakia 26458 G 96 96
214 Slovakia 26459 A 96 96
215 Slovakia 26460 T 96 96
216 Slovakia 26461 C 96 96
217 Slovakia 26462 T 96 96
218 Slovakia 26463 T 96 96
219 Slovakia 26464 C 96 96
220 Slovakia 26465 T 96 96
221 Slovakia 26466 G 96 96
222 Slovakia 26467 G 96 96
223 Slovakia 26468 T 96 96
224 Slovakia 26469 C 96 96
225 Slovakia 26470 T 96 96
226 Slovakia 26471 A 96 96
227 Slovakia 26472 A 96 96