National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12 1                                
C     9                                  
D     3                                  
E     6                                  
F     15         1                        
G     3                                  
I     9                                  
K     6                                  
L     43         1       3                
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24         1                 1      
T     12                                  
V     39             1                 1  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Singapore 26245 A 1731 1731
1 Singapore 26246 T 1731 1731
2 Singapore 26247 G 1731 1731
3 Singapore 26248 T 1731 1731
4 Singapore 26249 A 1731 1731
5 Singapore 26250 C 1731 1731
6 Singapore 26251 T 1731 1731
7 Singapore 26252 C 1731 1731
8 Singapore 26253 A 1731 1731
9 Singapore 26254 T 1731 1731
10 Singapore 26255 T 1731 1731
11 Singapore 26256 C T 1731 1730 Phe4Phe
12 Singapore 26257 G 1731 1731
13 Singapore 26258 T 1731 1731
14 Singapore 26259 T 1731 1731
15 Singapore 26260 T 1731 1731
16 Singapore 26261 C 1731 1731
17 Singapore 26262 G 1731 1731
18 Singapore 26263 G 1731 1731
19 Singapore 26264 A 1731 1731
20 Singapore 26265 A 1731 1731
21 Singapore 26266 G 1731 1730
22 Singapore 26267 A 1731 1731
23 Singapore 26268 G 1731 1731
24 Singapore 26269 A 1731 1731
25 Singapore 26270 C 1731 1731
26 Singapore 26271 A 1731 1731
27 Singapore 26272 G 1731 1731
28 Singapore 26273 G 1731 1731
29 Singapore 26274 T 1731 1731
30 Singapore 26275 A 1731 1731
31 Singapore 26276 C 1731 1731
32 Singapore 26277 G 1731 1731
33 Singapore 26278 T 1731 1731
34 Singapore 26279 T 1731 1731
35 Singapore 26280 A 1731 1731
36 Singapore 26281 A 1731 1731
37 Singapore 26282 T 1731 1731
38 Singapore 26283 A 1731 1731
39 Singapore 26284 G 1731 1731
40 Singapore 26285 T 1731 1731
41 Singapore 26286 T 1731 1731
42 Singapore 26287 A 1731 1731
43 Singapore 26288 A 1731 1731
44 Singapore 26289 T 1731 1731
45 Singapore 26290 A 1731 1731
46 Singapore 26291 G 1731 1731
47 Singapore 26292 C 1731 1731
48 Singapore 26293 G 1731 1731
49 Singapore 26294 T 1731 1731
50 Singapore 26295 A 1731 1731
51 Singapore 26296 C 1731 1731
52 Singapore 26297 T 1731 1731
53 Singapore 26298 T 1731 1731
54 Singapore 26299 C 1731 1731
55 Singapore 26300 T 1731 1731
56 Singapore 26301 T 1731 1731
57 Singapore 26302 T 1731 1731
58 Singapore 26303 T 1731 1731
59 Singapore 26304 T 1731 1731
60 Singapore 26305 C T 1731 1729 Leu21Phe
61 Singapore 26306 T 1731 1731
62 Singapore 26307 T 1731 1731
63 Singapore 26308 G 1731 1731
64 Singapore 26309 C 1731 1731
65 Singapore 26310 T 1731 1731
66 Singapore 26311 T 1731 1731
67 Singapore 26312 T 1731 1731
68 Singapore 26313 C 1731 1731
69 Singapore 26314 G 1731 1731
70 Singapore 26315 T 1731 1731
71 Singapore 26316 G 1731 1731
72 Singapore 26317 G 1731 1731
73 Singapore 26318 T 1731 1731
74 Singapore 26319 A 1731 1731
75 Singapore 26320 T 1731 1731
76 Singapore 26321 T 1731 1731
77 Singapore 26322 C 1731 1731
78 Singapore 26323 T 1731 1731
79 Singapore 26324 T 1731 1731
80 Singapore 26325 G A 1731 1729 Leu27Leu
81 Singapore 26326 C 1731 1731
82 Singapore 26327 T 1731 1731
83 Singapore 26328 A 1731 1731
84 Singapore 26329 G 1731 1731
85 Singapore 26330 T 1731 1731
86 Singapore 26331 T 1731 1731
87 Singapore 26332 A 1731 1731
88 Singapore 26333 C 1731 1730
89 Singapore 26334 A 1731 1731
90 Singapore 26335 C 1731 1731
91 Singapore 26336 T 1731 1731
92 Singapore 26337 A 1731 1731
93 Singapore 26338 G 1731 1731
94 Singapore 26339 C 1731 1731
95 Singapore 26340 C 1731 1730
96 Singapore 26341 A 1731 1731
97 Singapore 26342 T 1731 1731
98 Singapore 26343 C 1731 1731
99 Singapore 26344 C 1731 1731
100 Singapore 26345 T 1731 1731
101 Singapore 26346 T 1731 1731
102 Singapore 26347 A 1731 1731
103 Singapore 26348 C 1731 1731
104 Singapore 26349 T 1731 1731
105 Singapore 26350 G 1731 1731
106 Singapore 26351 C 1731 1731
107 Singapore 26352 G 1731 1731
108 Singapore 26353 C 1731 1731
109 Singapore 26354 T 1731 1731
110 Singapore 26355 T 1731 1731
111 Singapore 26356 C 1731 1731
112 Singapore 26357 G 1731 1731
113 Singapore 26358 A 1730 1730
114 Singapore 26359 T 1730 1730
115 Singapore 26360 T 1730 1730
116 Singapore 26361 G 1730 1730
117 Singapore 26362 T 1730 1730
118 Singapore 26363 G 1730 1730
119 Singapore 26364 T 1730 1730
120 Singapore 26365 G 1730 1730
121 Singapore 26366 C 1730 1730
122 Singapore 26367 G T 1730 1729 Ala41Ala
123 Singapore 26368 T 1730 1729
124 Singapore 26369 A 1730 1730
125 Singapore 26370 C 1730 1730
126 Singapore 26371 T 1730 1730
127 Singapore 26372 G 1730 1730
128 Singapore 26373 C 1730 1730
129 Singapore 26374 T 1730 1730
130 Singapore 26375 G 1730 1730
131 Singapore 26376 C 1730 1730
132 Singapore 26377 A 1730 1730
133 Singapore 26378 A 1730 1730
134 Singapore 26379 T 1730 1730
135 Singapore 26380 A 1730 1730
136 Singapore 26381 T 1730 1730
137 Singapore 26382 T 1730 1730
138 Singapore 26383 G 1730 1730
139 Singapore 26384 T 1730 1730
140 Singapore 26385 T 1730 1730
141 Singapore 26386 A 1730 1730
142 Singapore 26387 A 1730 1730
143 Singapore 26388 C 1730 1730
144 Singapore 26389 G 1730 1730
145 Singapore 26390 T 1730 1730
146 Singapore 26391 G 1730 1730
147 Singapore 26392 A 1730 1730
148 Singapore 26393 G 1730 1730
149 Singapore 26394 T 1730 1730
150 Singapore 26395 C 1730 1729
151 Singapore 26396 T 1730 1730
152 Singapore 26397 T 1730 1730
153 Singapore 26398 G A 1730 1728 Val52Ile
154 Singapore 26399 T 1730 1730
155 Singapore 26400 A 1730 1730
156 Singapore 26401 A 1730 1730
157 Singapore 26402 A 1730 1730
158 Singapore 26403 A 1730 1730
159 Singapore 26404 C 1730 1730
160 Singapore 26405 C 1730 1730
161 Singapore 26406 T 1730 1730
162 Singapore 26407 T 1730 1730
163 Singapore 26408 C 1730 1729
164 Singapore 26409 T 1730 1730
165 Singapore 26410 T 1730 1730
166 Singapore 26411 T 1730 1729
167 Singapore 26412 T 1730 1730
168 Singapore 26413 T 1730 1730
169 Singapore 26414 A 1730 1730
170 Singapore 26415 C 1730 1730
171 Singapore 26416 G 1730 1730
172 Singapore 26417 T 1730 1730
173 Singapore 26418 T 1730 1730
174 Singapore 26419 T 1730 1730
175 Singapore 26420 A 1730 1730
176 Singapore 26421 C 1730 1730
177 Singapore 26422 T 1730 1730
178 Singapore 26423 C 1730 1730
179 Singapore 26424 T C 1730 1729 Ser60Ser
180 Singapore 26425 C 1730 1730
181 Singapore 26426 G 1730 1730
182 Singapore 26427 T 1730 1730
183 Singapore 26428 G 1730 1730
184 Singapore 26429 T 1730 1730
185 Singapore 26430 T 1730 1730
186 Singapore 26431 A 1730 1730
187 Singapore 26432 A 1730 1730
188 Singapore 26433 A 1730 1730
189 Singapore 26434 A 1730 1730
190 Singapore 26435 A 1730 1730
191 Singapore 26436 T 1730 1730
192 Singapore 26437 C 1730 1730
193 Singapore 26438 T 1730 1730
194 Singapore 26439 G T 1730 1728 Leu65Leu
195 Singapore 26440 A 1730 1730
196 Singapore 26441 A 1730 1730
197 Singapore 26442 T 1730 1729
198 Singapore 26443 T 1730 1730
199 Singapore 26444 C 1730 1730
200 Singapore 26445 T 1730 1730
201 Singapore 26446 T 1730 1730
202 Singapore 26447 C T 1730 1729 Ser68Phe
203 Singapore 26448 T 1730 1730
204 Singapore 26449 A 1730 1730
205 Singapore 26450 G 1730 1730
206 Singapore 26451 A 1730 1730
207 Singapore 26452 G 1730 1730
208 Singapore 26453 T 1730 1730
209 Singapore 26454 T 1730 1730
210 Singapore 26455 C 1730 1730
211 Singapore 26456 C 1730 1729
212 Singapore 26457 T 1730 1730
213 Singapore 26458 G 1730 1730
214 Singapore 26459 A 1730 1730
215 Singapore 26460 T 1730 1730
216 Singapore 26461 C 1730 1729
217 Singapore 26462 T 1730 1730
218 Singapore 26463 T 1730 1730
219 Singapore 26464 C T 1730 1729 Leu74Leu
220 Singapore 26465 T 1730 1730
221 Singapore 26466 G 1730 1730
222 Singapore 26467 G 1730 1730
223 Singapore 26468 T 1730 1730
224 Singapore 26469 C A 1730 1727 Val75Val
225 Singapore 26470 T 1730 1730
226 Singapore 26471 A 1730 1730
227 Singapore 26472 A 1730 1730