National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43                               1  
M     3                                  
N     15                     1            
P     6                                  
R     9             1                    
S     24                                  
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Senegal 26245 A 136 136
1 Senegal 26246 T 136 136
2 Senegal 26247 G 136 136
3 Senegal 26248 T 136 136
4 Senegal 26249 A 136 136
5 Senegal 26250 C 136 136
6 Senegal 26251 T 136 136
7 Senegal 26252 C 136 136
8 Senegal 26253 A 136 136
9 Senegal 26254 T 136 136
10 Senegal 26255 T 136 136
11 Senegal 26256 C 136 136
12 Senegal 26257 G 136 136
13 Senegal 26258 T 136 136
14 Senegal 26259 T 136 136
15 Senegal 26260 T 136 136
16 Senegal 26261 C 136 136
17 Senegal 26262 G 136 136
18 Senegal 26263 G 136 136
19 Senegal 26264 A 136 136
20 Senegal 26265 A 136 136
21 Senegal 26266 G 136 136
22 Senegal 26267 A 136 136
23 Senegal 26268 G 136 136
24 Senegal 26269 A 136 136
25 Senegal 26270 C 136 136
26 Senegal 26271 A 136 136
27 Senegal 26272 G 136 136
28 Senegal 26273 G 136 136
29 Senegal 26274 T 136 136
30 Senegal 26275 A 136 136
31 Senegal 26276 C 136 136
32 Senegal 26277 G 136 136
33 Senegal 26278 T 136 136
34 Senegal 26279 T 136 136
35 Senegal 26280 A 136 136
36 Senegal 26281 A 136 136
37 Senegal 26282 T 136 136
38 Senegal 26283 A 136 136
39 Senegal 26284 G 136 136
40 Senegal 26285 T 136 136
41 Senegal 26286 T 136 136
42 Senegal 26287 A 136 136
43 Senegal 26288 A 136 136
44 Senegal 26289 T 136 136
45 Senegal 26290 A 136 136
46 Senegal 26291 G 136 136
47 Senegal 26292 C 136 136
48 Senegal 26293 G 136 136
49 Senegal 26294 T 136 136
50 Senegal 26295 A 136 136
51 Senegal 26296 C 136 136
52 Senegal 26297 T 136 136
53 Senegal 26298 T 136 136
54 Senegal 26299 C 136 136
55 Senegal 26300 T 136 136
56 Senegal 26301 T 136 136
57 Senegal 26302 T 136 136
58 Senegal 26303 T 136 136
59 Senegal 26304 T 136 136
60 Senegal 26305 C 136 136
61 Senegal 26306 T 136 136
62 Senegal 26307 T 136 136
63 Senegal 26308 G 136 136
64 Senegal 26309 C 136 136
65 Senegal 26310 T 136 136
66 Senegal 26311 T 136 136
67 Senegal 26312 T 136 136
68 Senegal 26313 C 136 136
69 Senegal 26314 G 136 136
70 Senegal 26315 T 136 136
71 Senegal 26316 G 136 136
72 Senegal 26317 G 136 136
73 Senegal 26318 T 136 136
74 Senegal 26319 A 136 136
75 Senegal 26320 T 136 136
76 Senegal 26321 T 136 136
77 Senegal 26322 C 136 136
78 Senegal 26323 T 136 136
79 Senegal 26324 T 136 136
80 Senegal 26325 G 136 136
81 Senegal 26326 C 136 136
82 Senegal 26327 T 136 136
83 Senegal 26328 A 136 136
84 Senegal 26329 G 136 136
85 Senegal 26330 T 136 136
86 Senegal 26331 T 136 136
87 Senegal 26332 A 136 136
88 Senegal 26333 C 136 136
89 Senegal 26334 A 136 136
90 Senegal 26335 C 136 136
91 Senegal 26336 T 136 136
92 Senegal 26337 A 136 136
93 Senegal 26338 G 136 136
94 Senegal 26339 C 136 136
95 Senegal 26340 C 136 136
96 Senegal 26341 A 136 136
97 Senegal 26342 T 136 136
98 Senegal 26343 C 136 136
99 Senegal 26344 C 136 136
100 Senegal 26345 T 136 136
101 Senegal 26346 T 136 136
102 Senegal 26347 A 136 136
103 Senegal 26348 C 136 136
104 Senegal 26349 T 136 136
105 Senegal 26350 G 136 136
106 Senegal 26351 C 136 136
107 Senegal 26352 G 136 136
108 Senegal 26353 C 136 136
109 Senegal 26354 T 136 136
110 Senegal 26355 T 136 136
111 Senegal 26356 C 136 136
112 Senegal 26357 G 136 136
113 Senegal 26358 A 136 136
114 Senegal 26359 T 136 135
115 Senegal 26360 T 136 135
116 Senegal 26361 G 136 135
117 Senegal 26362 T 136 135
118 Senegal 26363 G 136 135
119 Senegal 26364 T 136 136
120 Senegal 26365 G 136 136
121 Senegal 26366 C 136 135
122 Senegal 26367 G 136 136
123 Senegal 26368 T 136 136
124 Senegal 26369 A 136 136
125 Senegal 26370 C 136 136
126 Senegal 26371 T 136 136
127 Senegal 26372 G 136 136
128 Senegal 26373 C 136 135
129 Senegal 26374 T 136 135
130 Senegal 26375 G 136 135
131 Senegal 26376 C 136 135
132 Senegal 26377 A 136 135
133 Senegal 26378 A 136 135
134 Senegal 26379 T 136 135
135 Senegal 26380 A 136 135
136 Senegal 26381 T 136 135
137 Senegal 26382 T 136 135
138 Senegal 26383 G 136 135
139 Senegal 26384 T 136 135
140 Senegal 26385 T 136 135
141 Senegal 26386 A 136 135
142 Senegal 26387 A 136 135
143 Senegal 26388 C 136 135
144 Senegal 26389 G 136 135
145 Senegal 26390 T 136 135
146 Senegal 26391 G 136 135
147 Senegal 26392 A 136 136
148 Senegal 26393 G 136 136
149 Senegal 26394 T 136 136
150 Senegal 26395 C 136 136
151 Senegal 26396 T 136 135
152 Senegal 26397 T 136 136
153 Senegal 26398 G 136 136
154 Senegal 26399 T 136 136
155 Senegal 26400 A 136 136
156 Senegal 26401 A 136 136
157 Senegal 26402 A 136 136
158 Senegal 26403 A 136 136
159 Senegal 26404 C 136 136
160 Senegal 26405 C 136 136
161 Senegal 26406 T 136 136
162 Senegal 26407 T 136 136
163 Senegal 26408 C 136 136
164 Senegal 26409 T 136 136
165 Senegal 26410 T 136 136
166 Senegal 26411 T 136 136
167 Senegal 26412 T 136 136
168 Senegal 26413 T 136 136
169 Senegal 26414 A 136 136
170 Senegal 26415 C 136 136
171 Senegal 26416 G 136 136
172 Senegal 26417 T 136 136
173 Senegal 26418 T 136 136
174 Senegal 26419 T 136 136
175 Senegal 26420 A 136 136
176 Senegal 26421 C 136 136
177 Senegal 26422 T 136 136
178 Senegal 26423 C 136 136
179 Senegal 26424 T 136 136
180 Senegal 26425 C 136 136
181 Senegal 26426 G 136 136
182 Senegal 26427 T 136 136
183 Senegal 26428 G 136 136
184 Senegal 26429 T 136 136
185 Senegal 26430 T 136 136
186 Senegal 26431 A 136 136
187 Senegal 26432 A 136 136
188 Senegal 26433 A 136 136
189 Senegal 26434 A 136 136
190 Senegal 26435 A 136 136
191 Senegal 26436 T C 136 134 Asn64Asn
192 Senegal 26437 C 136 136
193 Senegal 26438 T 136 136
194 Senegal 26439 G 136 136
195 Senegal 26440 A 136 136
196 Senegal 26441 A 136 136
197 Senegal 26442 T 136 136
198 Senegal 26443 T 136 136
199 Senegal 26444 C 136 136
200 Senegal 26445 T 136 136
201 Senegal 26446 T 136 136
202 Senegal 26447 C 136 136
203 Senegal 26448 T 136 136
204 Senegal 26449 A 136 136
205 Senegal 26450 G T 136 135 Arg69Ile
206 Senegal 26451 A 136 136
207 Senegal 26452 G 136 136
208 Senegal 26453 T 136 136
209 Senegal 26454 T 136 136
210 Senegal 26455 C 136 136
211 Senegal 26456 C 136 135
212 Senegal 26457 T 136 136
213 Senegal 26458 G 136 136
214 Senegal 26459 A 136 136
215 Senegal 26460 T 136 136
216 Senegal 26461 C 136 136
217 Senegal 26462 T 136 136
218 Senegal 26463 T 136 136
219 Senegal 26464 C G 136 135 Leu74Val
220 Senegal 26465 T 136 136
221 Senegal 26466 G 136 136
222 Senegal 26467 G 136 136
223 Senegal 26468 T 136 136
224 Senegal 26469 C 136 136
225 Senegal 26470 T 136 136
226 Senegal 26471 A 136 136
227 Senegal 26472 A 136 136