National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24                                  
T     12                                  
V     39                               1  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Rwanda 26245 A 32 32
1 Rwanda 26246 T 32 32
2 Rwanda 26247 G 32 32
3 Rwanda 26248 T 32 32
4 Rwanda 26249 A 32 32
5 Rwanda 26250 C 32 32
6 Rwanda 26251 T 32 32
7 Rwanda 26252 C 32 32
8 Rwanda 26253 A 32 32
9 Rwanda 26254 T 32 32
10 Rwanda 26255 T 32 32
11 Rwanda 26256 C 32 32
12 Rwanda 26257 G 32 32
13 Rwanda 26258 T 32 32
14 Rwanda 26259 T 32 32
15 Rwanda 26260 T 32 32
16 Rwanda 26261 C 32 32
17 Rwanda 26262 G 32 32
18 Rwanda 26263 G 32 32
19 Rwanda 26264 A 32 32
20 Rwanda 26265 A 32 32
21 Rwanda 26266 G 32 32
22 Rwanda 26267 A 32 32
23 Rwanda 26268 G 32 32
24 Rwanda 26269 A 32 32
25 Rwanda 26270 C 32 32
26 Rwanda 26271 A 32 32
27 Rwanda 26272 G 32 32
28 Rwanda 26273 G 32 32
29 Rwanda 26274 T 32 32
30 Rwanda 26275 A 32 32
31 Rwanda 26276 C 32 32
32 Rwanda 26277 G 32 32
33 Rwanda 26278 T 32 32
34 Rwanda 26279 T 32 32
35 Rwanda 26280 A 32 32
36 Rwanda 26281 A 32 32
37 Rwanda 26282 T 32 32
38 Rwanda 26283 A 32 32
39 Rwanda 26284 G 32 32
40 Rwanda 26285 T 32 32
41 Rwanda 26286 T 32 32
42 Rwanda 26287 A 32 32
43 Rwanda 26288 A 32 32
44 Rwanda 26289 T 32 32
45 Rwanda 26290 A 32 32
46 Rwanda 26291 G 29 29
47 Rwanda 26292 C 29 29
48 Rwanda 26293 G 29 29
49 Rwanda 26294 T 29 29
50 Rwanda 26295 A 29 29
51 Rwanda 26296 C 29 29
52 Rwanda 26297 T 29 29
53 Rwanda 26298 T 29 29
54 Rwanda 26299 C 29 29
55 Rwanda 26300 T 29 29
56 Rwanda 26301 T 29 29
57 Rwanda 26302 T 29 29
58 Rwanda 26303 T 29 29
59 Rwanda 26304 T 29 29
60 Rwanda 26305 C 29 29
61 Rwanda 26306 T 29 29
62 Rwanda 26307 T 29 29
63 Rwanda 26308 G 29 29
64 Rwanda 26309 C 29 29
65 Rwanda 26310 T 29 29
66 Rwanda 26311 T 29 29
67 Rwanda 26312 T 29 29
68 Rwanda 26313 C 29 29
69 Rwanda 26314 G 29 29
70 Rwanda 26315 T 29 29
71 Rwanda 26316 G 29 29
72 Rwanda 26317 G 29 29
73 Rwanda 26318 T 29 29
74 Rwanda 26319 A G 29 28 Val25Val
75 Rwanda 26320 T 29 29
76 Rwanda 26321 T 29 29
77 Rwanda 26322 C 29 29
78 Rwanda 26323 T 29 29
79 Rwanda 26324 T 29 29
80 Rwanda 26325 G 29 29
81 Rwanda 26326 C 29 29
82 Rwanda 26327 T 29 29
83 Rwanda 26328 A 29 29
84 Rwanda 26329 G 29 29
85 Rwanda 26330 T 29 29
86 Rwanda 26331 T 29 29
87 Rwanda 26332 A 29 29
88 Rwanda 26333 C 29 29
89 Rwanda 26334 A 29 29
90 Rwanda 26335 C 29 29
91 Rwanda 26336 T 29 29
92 Rwanda 26337 A 29 29
93 Rwanda 26338 G 29 29
94 Rwanda 26339 C 29 29
95 Rwanda 26340 C 29 29
96 Rwanda 26341 A 29 29
97 Rwanda 26342 T 29 29
98 Rwanda 26343 C 29 29
99 Rwanda 26344 C 29 29
100 Rwanda 26345 T 29 29
101 Rwanda 26346 T 29 29
102 Rwanda 26347 A 29 29
103 Rwanda 26348 C 29 29
104 Rwanda 26349 T 29 29
105 Rwanda 26350 G 29 29
106 Rwanda 26351 C 29 29
107 Rwanda 26352 G 29 29
108 Rwanda 26353 C 29 29
109 Rwanda 26354 T 29 29
110 Rwanda 26355 T 29 29
111 Rwanda 26356 C 29 29
112 Rwanda 26357 G 29 29
113 Rwanda 26358 A 29 29
114 Rwanda 26359 T 29 29
115 Rwanda 26360 T 29 29
116 Rwanda 26361 G 29 29
117 Rwanda 26362 T 29 29
118 Rwanda 26363 G 29 29
119 Rwanda 26364 T 29 29
120 Rwanda 26365 G 29 29
121 Rwanda 26366 C 29 29
122 Rwanda 26367 G 29 29
123 Rwanda 26368 T 29 29
124 Rwanda 26369 A 29 29
125 Rwanda 26370 C 29 29
126 Rwanda 26371 T 29 29
127 Rwanda 26372 G 29 29
128 Rwanda 26373 C 29 29
129 Rwanda 26374 T 29 29
130 Rwanda 26375 G 29 29
131 Rwanda 26376 C 29 29
132 Rwanda 26377 A 29 29
133 Rwanda 26378 A 29 29
134 Rwanda 26379 T 29 29
135 Rwanda 26380 A 29 29
136 Rwanda 26381 T 29 29
137 Rwanda 26382 T 29 29
138 Rwanda 26383 G 29 29
139 Rwanda 26384 T 29 29
140 Rwanda 26385 T 29 29
141 Rwanda 26386 A 29 29
142 Rwanda 26387 A 29 29
143 Rwanda 26388 C 29 29
144 Rwanda 26389 G 29 29
145 Rwanda 26390 T 29 29
146 Rwanda 26391 G 29 29
147 Rwanda 26392 A 29 29
148 Rwanda 26393 G 29 29
149 Rwanda 26394 T 29 29
150 Rwanda 26395 C 29 29
151 Rwanda 26396 T 29 29
152 Rwanda 26397 T 29 29
153 Rwanda 26398 G 29 29
154 Rwanda 26399 T 29 29
155 Rwanda 26400 A 29 29
156 Rwanda 26401 A 29 29
157 Rwanda 26402 A 29 29
158 Rwanda 26403 A 29 29
159 Rwanda 26404 C 29 29
160 Rwanda 26405 C 29 29
161 Rwanda 26406 T 29 29
162 Rwanda 26407 T 29 29
163 Rwanda 26408 C 29 29
164 Rwanda 26409 T 29 29
165 Rwanda 26410 T 29 29
166 Rwanda 26411 T 29 29
167 Rwanda 26412 T 29 29
168 Rwanda 26413 T 29 29
169 Rwanda 26414 A 29 29
170 Rwanda 26415 C 29 29
171 Rwanda 26416 G 29 29
172 Rwanda 26417 T 29 29
173 Rwanda 26418 T 29 29
174 Rwanda 26419 T 29 29
175 Rwanda 26420 A 29 29
176 Rwanda 26421 C 29 29
177 Rwanda 26422 T 29 29
178 Rwanda 26423 C 29 29
179 Rwanda 26424 T 29 29
180 Rwanda 26425 C 29 29
181 Rwanda 26426 G 29 29
182 Rwanda 26427 T 29 29
183 Rwanda 26428 G 29 29
184 Rwanda 26429 T 29 29
185 Rwanda 26430 T 29 29
186 Rwanda 26431 A 29 29
187 Rwanda 26432 A 29 29
188 Rwanda 26433 A 29 29
189 Rwanda 26434 A 29 29
190 Rwanda 26435 A 29 29
191 Rwanda 26436 T 29 29
192 Rwanda 26437 C 29 29
193 Rwanda 26438 T 29 29
194 Rwanda 26439 G 29 29
195 Rwanda 26440 A 29 29
196 Rwanda 26441 A 29 29
197 Rwanda 26442 T 29 29
198 Rwanda 26443 T 29 29
199 Rwanda 26444 C 29 29
200 Rwanda 26445 T 29 29
201 Rwanda 26446 T 29 29
202 Rwanda 26447 C 29 29
203 Rwanda 26448 T 29 29
204 Rwanda 26449 A 29 29
205 Rwanda 26450 G 29 29
206 Rwanda 26451 A 29 29
207 Rwanda 26452 G 29 29
208 Rwanda 26453 T 29 29
209 Rwanda 26454 T 29 29
210 Rwanda 26455 C 29 29
211 Rwanda 26456 C 29 29
212 Rwanda 26457 T 29 29
213 Rwanda 26458 G 29 29
214 Rwanda 26459 A 29 29
215 Rwanda 26460 T 29 29
216 Rwanda 26461 C 29 29
217 Rwanda 26462 T 29 29
218 Rwanda 26463 T 29 29
219 Rwanda 26464 C 29 29
220 Rwanda 26465 T 29 29
221 Rwanda 26466 G 29 29
222 Rwanda 26467 G 29 29
223 Rwanda 26468 T 29 29
224 Rwanda 26469 C 29 29
225 Rwanda 26470 T 29 29
226 Rwanda 26471 A 29 29
227 Rwanda 26472 A 29 29