National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P R S T V Y
*     2                                    
-     228                                    
?                                          
A     12 1                                  
C     9                                    
D     3                                    
E     6     1           1                  
F     15         4         1                
G     3                             1      
H                                          
I     9                                    
K     6                                    
L     43         2         2                
M     3                                    
N     15             1   1                  
P     6             1               1      
R     9                                    
S     24         2                   2      
T     12               1                    
V     39 1       1     1     1           1  
Y     12                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Russia 26245 A 1777 1777
1 Russia 26246 T 1777 1777
2 Russia 26247 G 1777 1777
3 Russia 26248 T 1777 1776
4 Russia 26249 A 1777 1777
5 Russia 26250 C 1777 1777
6 Russia 26251 T 1777 1777
7 Russia 26252 C 1778 1778
8 Russia 26253 A 1778 1778
9 Russia 26254 T 1778 1778
10 Russia 26255 T 1778 1778
11 Russia 26256 C T,A 1778 1775 Phe4Leu-p.Phe4Phe
12 Russia 26257 G A 1778 1776 Val5Ile
13 Russia 26258 T C 1778 1774 Val5Ala
14 Russia 26259 T 1778 1778
15 Russia 26260 T 1778 1778
16 Russia 26261 C 1778 1778
17 Russia 26262 G A 1780 1779 Ser6Ser
18 Russia 26263 G A 1780 1779 Glu7Lys
19 Russia 26264 A 1780 1780
20 Russia 26265 A 1780 1780
21 Russia 26266 G 1780 1780
22 Russia 26267 A 1780 1780
23 Russia 26268 G T 1781 1764 Glu8Asp
24 Russia 26269 A 1781 1781
25 Russia 26270 C 1781 1781
26 Russia 26271 A 1781 1781
27 Russia 26272 G A 1781 1780 Gly10Ser
28 Russia 26273 G 1781 1781
29 Russia 26274 T 1781 1781
30 Russia 26275 A 1779 1779
31 Russia 26276 C 1779 1779
32 Russia 26277 G 1780 1780
33 Russia 26278 T 1780 1779
34 Russia 26279 T 1780 1780
35 Russia 26280 A 1781 1781
36 Russia 26281 A 1781 1781
37 Russia 26282 T 1781 1779
38 Russia 26283 A 1781 1779
39 Russia 26284 G 1781 1779
40 Russia 26285 T 1781 1779
41 Russia 26286 T 1782 1780
42 Russia 26287 A 1782 1780
43 Russia 26288 A 1782 1780
44 Russia 26289 T 1782 1780
45 Russia 26290 A 1781 1779
46 Russia 26291 G 1779 1773
47 Russia 26292 C 1779 1774
48 Russia 26293 G 1780 1775
49 Russia 26294 T 1781 1777
50 Russia 26295 A 1780 1776
51 Russia 26296 C 1780 1776
52 Russia 26297 T 1780 1776
53 Russia 26298 T 1780 1776
54 Russia 26299 C 1780 1775
55 Russia 26300 T 1780 1774
56 Russia 26301 T 1780 1778
57 Russia 26302 T 1780 1778
58 Russia 26303 T 1780 1778
59 Russia 26304 T C 1780 1777 Phe20Phe
60 Russia 26305 C T 1780 1777 Leu21Phe
61 Russia 26306 T 1780 1778
62 Russia 26307 T 1779 1777
63 Russia 26308 G 1779 1777
64 Russia 26309 C 1779 1778
65 Russia 26310 T 1779 1778
66 Russia 26311 T 1779 1779
67 Russia 26312 T 1779 1779
68 Russia 26313 C T 1779 1777 Phe23Phe
69 Russia 26314 G A 1779 1778 Val24Met
70 Russia 26315 T 1779 1779
71 Russia 26316 G 1779 1779
72 Russia 26317 G 1779 1779
73 Russia 26318 T 1779 1779
74 Russia 26319 A G 1779 1778 Val25Val
75 Russia 26320 T 1779 1779
76 Russia 26321 T 1779 1779
77 Russia 26322 C T 1779 1776 Phe26Phe
78 Russia 26323 T 1779 1779
79 Russia 26324 T 1779 1779
80 Russia 26325 G 1779 1779
81 Russia 26326 C 1777 1777
82 Russia 26327 T 1777 1777
83 Russia 26328 A 1777 1777
84 Russia 26329 G 1778 1778
85 Russia 26330 T 1778 1777
86 Russia 26331 T 1778 1778
87 Russia 26332 A 1777 1777
88 Russia 26333 C T 1777 1772 Thr30Ile
89 Russia 26334 A 1777 1777
90 Russia 26335 C T 1777 1775 Leu31Leu
91 Russia 26336 T 1777 1777
92 Russia 26337 A 1777 1777
93 Russia 26338 G 1778 1778
94 Russia 26339 C 1775 1775
95 Russia 26340 C T 1775 1774 Ala32Ala
96 Russia 26341 A 1773 1771
97 Russia 26342 T 1773 1770
98 Russia 26343 C 1773 1771
99 Russia 26344 C 1773 1771
100 Russia 26345 T 1773 1772
101 Russia 26346 T 1773 1772
102 Russia 26347 A 1773 1772
103 Russia 26348 C 1773 1772
104 Russia 26349 T 1773 1772
105 Russia 26350 G 1772 1771
106 Russia 26351 C 1772 1771
107 Russia 26352 G 1772 1770
108 Russia 26353 C T 1772 1770 Leu37Phe
109 Russia 26354 T 1772 1771
110 Russia 26355 T 1772 1771
111 Russia 26356 C 1772 1771
112 Russia 26357 G 1770 1769
113 Russia 26358 A 1771 1770
114 Russia 26359 T 1771 1770
115 Russia 26360 T 1771 1770
116 Russia 26361 G 1770 1769
117 Russia 26362 T 1770 1768
118 Russia 26363 G 1772 1771
119 Russia 26364 T 1771 1769
120 Russia 26365 G 1771 1769
121 Russia 26366 C 1771 1769
122 Russia 26367 G 1771 1770
123 Russia 26368 T 1771 1770
124 Russia 26369 A 1771 1769
125 Russia 26370 C 1771 1769
126 Russia 26371 T 1771 1769
127 Russia 26372 G 1771 1769
128 Russia 26373 C 1771 1769
129 Russia 26374 T 1771 1769
130 Russia 26375 G 1772 1771
131 Russia 26376 C 1772 1771
132 Russia 26377 A 1772 1771
133 Russia 26378 A 1772 1771
134 Russia 26379 T 1772 1771
135 Russia 26380 A 1771 1769
136 Russia 26381 T 1771 1769
137 Russia 26382 T 1772 1770
138 Russia 26383 G 1772 1770
139 Russia 26384 T 1772 1770
140 Russia 26385 T 1772 1770
141 Russia 26386 A 1772 1770
142 Russia 26387 A 1772 1770
143 Russia 26388 C 1772 1770
144 Russia 26389 G 1772 1770
145 Russia 26390 T 1771 1766
146 Russia 26391 G 1771 1767
147 Russia 26392 A 1771 1767
148 Russia 26393 G 1771 1767
149 Russia 26394 T 1771 1767
150 Russia 26395 C 1771 1767
151 Russia 26396 T 1771 1766
152 Russia 26397 T 1771 1765
153 Russia 26398 G 1771 1765
154 Russia 26399 T 1771 1765
155 Russia 26400 A 1771 1765
156 Russia 26401 A 1771 1765
157 Russia 26402 A 1771 1765
158 Russia 26403 A 1771 1766
159 Russia 26404 C 1771 1766
160 Russia 26405 C 1771 1766
161 Russia 26406 T 1771 1766
162 Russia 26407 T 1771 1766
163 Russia 26408 C T 1771 1765 Ser55Phe
164 Russia 26409 T 1771 1766
165 Russia 26410 T 1771 1766
166 Russia 26411 T 1771 1766
167 Russia 26412 T 1771 1766
168 Russia 26413 T 1771 1766
169 Russia 26414 A 1771 1766
170 Russia 26415 C 1771 1766
171 Russia 26416 G 1771 1766
172 Russia 26417 T 1771 1766
173 Russia 26418 T 1771 1766
174 Russia 26419 T 1771 1766
175 Russia 26420 A 1770 1764
176 Russia 26421 C 1770 1764
177 Russia 26422 T 1770 1764
178 Russia 26423 C 1770 1764
179 Russia 26424 T 1769 1763
180 Russia 26425 C 1778 1777
181 Russia 26426 G 1779 1779
182 Russia 26427 T 1779 1779
183 Russia 26428 G T 1779 1778 Val62Phe
184 Russia 26429 T 1779 1779
185 Russia 26430 T 1779 1779
186 Russia 26431 A 1779 1779
187 Russia 26432 A 1779 1779
188 Russia 26433 A 1779 1779
189 Russia 26434 A 1779 1779
190 Russia 26435 A 1779 1779
191 Russia 26436 T 1779 1779
192 Russia 26437 C 1779 1779
193 Russia 26438 T 1779 1778
194 Russia 26439 G 1779 1779
195 Russia 26440 A C 1779 1778 Asn66His
196 Russia 26441 A 1779 1779
197 Russia 26442 T G 1779 1778 Asn66Lys
198 Russia 26443 T 1776 1776
199 Russia 26444 C 1776 1776
200 Russia 26445 T C 1776 1774 Ser67Ser
201 Russia 26446 T 1776 1776
202 Russia 26447 C T 1776 1771 Ser68Phe
203 Russia 26448 T 1776 1776
204 Russia 26449 A 1776 1776
205 Russia 26450 G 1776 1776
206 Russia 26451 A 1775 1775
207 Russia 26452 G 1775 1775
208 Russia 26453 T 1775 1775
209 Russia 26454 T 1775 1775
210 Russia 26455 C T 1775 1773 Pro71Ser
211 Russia 26456 C A 1775 1774 Pro71His
212 Russia 26457 T 1775 1775
213 Russia 26458 G 1775 1775
214 Russia 26459 A 1775 1775
215 Russia 26460 T 1775 1775
216 Russia 26461 C 1775 1775
217 Russia 26462 T 1775 1775
218 Russia 26463 T 1775 1775
219 Russia 26464 C T 1775 1745 Leu74Leu
220 Russia 26465 T 1774 1774
221 Russia 26466 G 1774 1774
222 Russia 26467 G 1774 1774
223 Russia 26468 T 1774 1774
224 Russia 26469 C 1773 1773
225 Russia 26470 T 1773 1773
226 Russia 26471 A 1772 1772
227 Russia 26472 A 1772 1772