National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24                                  
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Qatar 26245 A 16 16
1 Qatar 26246 T 16 16
2 Qatar 26247 G 16 16
3 Qatar 26248 T 16 16
4 Qatar 26249 A 16 16
5 Qatar 26250 C 16 16
6 Qatar 26251 T 16 16
7 Qatar 26252 C 16 16
8 Qatar 26253 A 16 16
9 Qatar 26254 T 16 16
10 Qatar 26255 T 16 16
11 Qatar 26256 C 16 16
12 Qatar 26257 G 16 16
13 Qatar 26258 T 16 16
14 Qatar 26259 T 16 16
15 Qatar 26260 T 16 16
16 Qatar 26261 C 16 16
17 Qatar 26262 G 16 16
18 Qatar 26263 G 16 16
19 Qatar 26264 A 16 16
20 Qatar 26265 A 16 16
21 Qatar 26266 G 16 16
22 Qatar 26267 A 16 16
23 Qatar 26268 G 16 16
24 Qatar 26269 A 16 16
25 Qatar 26270 C 16 16
26 Qatar 26271 A 16 16
27 Qatar 26272 G 16 16
28 Qatar 26273 G 16 16
29 Qatar 26274 T 16 16
30 Qatar 26275 A 16 16
31 Qatar 26276 C 16 16
32 Qatar 26277 G 16 16
33 Qatar 26278 T 16 16
34 Qatar 26279 T 16 16
35 Qatar 26280 A 16 16
36 Qatar 26281 A 16 16
37 Qatar 26282 T 16 16
38 Qatar 26283 A 16 16
39 Qatar 26284 G 16 16
40 Qatar 26285 T 16 16
41 Qatar 26286 T 16 16
42 Qatar 26287 A 16 16
43 Qatar 26288 A 16 16
44 Qatar 26289 T 16 16
45 Qatar 26290 A 16 16
46 Qatar 26291 G 16 16
47 Qatar 26292 C 16 16
48 Qatar 26293 G 16 16
49 Qatar 26294 T 16 16
50 Qatar 26295 A 16 16
51 Qatar 26296 C 16 16
52 Qatar 26297 T 16 16
53 Qatar 26298 T 16 16
54 Qatar 26299 C 16 16
55 Qatar 26300 T 16 16
56 Qatar 26301 T 16 16
57 Qatar 26302 T 16 16
58 Qatar 26303 T 16 16
59 Qatar 26304 T 16 16
60 Qatar 26305 C 16 16
61 Qatar 26306 T 16 16
62 Qatar 26307 T 16 16
63 Qatar 26308 G 16 16
64 Qatar 26309 C 16 16
65 Qatar 26310 T 16 16
66 Qatar 26311 T 16 16
67 Qatar 26312 T 16 16
68 Qatar 26313 C 16 16
69 Qatar 26314 G 16 16
70 Qatar 26315 T 16 16
71 Qatar 26316 G 16 16
72 Qatar 26317 G 16 16
73 Qatar 26318 T 16 16
74 Qatar 26319 A 16 16
75 Qatar 26320 T 16 16
76 Qatar 26321 T 16 16
77 Qatar 26322 C 16 16
78 Qatar 26323 T 16 16
79 Qatar 26324 T 16 16
80 Qatar 26325 G 16 16
81 Qatar 26326 C 16 16
82 Qatar 26327 T 16 16
83 Qatar 26328 A 16 16
84 Qatar 26329 G 16 16
85 Qatar 26330 T 16 16
86 Qatar 26331 T 16 16
87 Qatar 26332 A 16 16
88 Qatar 26333 C 16 16
89 Qatar 26334 A 16 16
90 Qatar 26335 C 16 16
91 Qatar 26336 T 16 16
92 Qatar 26337 A 16 16
93 Qatar 26338 G 16 16
94 Qatar 26339 C 16 16
95 Qatar 26340 C 16 16
96 Qatar 26341 A 16 16
97 Qatar 26342 T 16 16
98 Qatar 26343 C 16 16
99 Qatar 26344 C 16 16
100 Qatar 26345 T 16 16
101 Qatar 26346 T 16 16
102 Qatar 26347 A 16 16
103 Qatar 26348 C 16 16
104 Qatar 26349 T 16 16
105 Qatar 26350 G 16 16
106 Qatar 26351 C 16 16
107 Qatar 26352 G 16 16
108 Qatar 26353 C 16 16
109 Qatar 26354 T 16 16
110 Qatar 26355 T 16 16
111 Qatar 26356 C 16 16
112 Qatar 26357 G 16 16
113 Qatar 26358 A 16 16
114 Qatar 26359 T 16 16
115 Qatar 26360 T 16 16
116 Qatar 26361 G 16 16
117 Qatar 26362 T 16 16
118 Qatar 26363 G 16 16
119 Qatar 26364 T 16 16
120 Qatar 26365 G 16 16
121 Qatar 26366 C 16 16
122 Qatar 26367 G 16 16
123 Qatar 26368 T 16 16
124 Qatar 26369 A 16 16
125 Qatar 26370 C 16 16
126 Qatar 26371 T 16 16
127 Qatar 26372 G 16 16
128 Qatar 26373 C 16 16
129 Qatar 26374 T 16 16
130 Qatar 26375 G 16 16
131 Qatar 26376 C 16 16
132 Qatar 26377 A 16 16
133 Qatar 26378 A 16 16
134 Qatar 26379 T 16 16
135 Qatar 26380 A 16 16
136 Qatar 26381 T 16 16
137 Qatar 26382 T 16 16
138 Qatar 26383 G 16 16
139 Qatar 26384 T 16 16
140 Qatar 26385 T 16 16
141 Qatar 26386 A 16 16
142 Qatar 26387 A 16 16
143 Qatar 26388 C 16 16
144 Qatar 26389 G 16 16
145 Qatar 26390 T 16 16
146 Qatar 26391 G 16 16
147 Qatar 26392 A 16 16
148 Qatar 26393 G 16 16
149 Qatar 26394 T 16 16
150 Qatar 26395 C 16 16
151 Qatar 26396 T 16 16
152 Qatar 26397 T 16 16
153 Qatar 26398 G 16 16
154 Qatar 26399 T 16 16
155 Qatar 26400 A 16 16
156 Qatar 26401 A 16 16
157 Qatar 26402 A 16 16
158 Qatar 26403 A 16 16
159 Qatar 26404 C 16 16
160 Qatar 26405 C 16 16
161 Qatar 26406 T 16 16
162 Qatar 26407 T 16 16
163 Qatar 26408 C 16 16
164 Qatar 26409 T 16 16
165 Qatar 26410 T 16 16
166 Qatar 26411 T 16 16
167 Qatar 26412 T 16 16
168 Qatar 26413 T 16 16
169 Qatar 26414 A 16 16
170 Qatar 26415 C 16 16
171 Qatar 26416 G 16 16
172 Qatar 26417 T 16 16
173 Qatar 26418 T 16 16
174 Qatar 26419 T 16 16
175 Qatar 26420 A 16 16
176 Qatar 26421 C 16 16
177 Qatar 26422 T 16 16
178 Qatar 26423 C 16 16
179 Qatar 26424 T 16 16
180 Qatar 26425 C 16 16
181 Qatar 26426 G 16 16
182 Qatar 26427 T 16 16
183 Qatar 26428 G 16 16
184 Qatar 26429 T 16 16
185 Qatar 26430 T 16 16
186 Qatar 26431 A 16 16
187 Qatar 26432 A 16 16
188 Qatar 26433 A 16 16
189 Qatar 26434 A 16 16
190 Qatar 26435 A 16 16
191 Qatar 26436 T 16 16
192 Qatar 26437 C 16 16
193 Qatar 26438 T 16 16
194 Qatar 26439 G 16 16
195 Qatar 26440 A 16 16
196 Qatar 26441 A 16 16
197 Qatar 26442 T 16 16
198 Qatar 26443 T 16 16
199 Qatar 26444 C 16 16
200 Qatar 26445 T 16 16
201 Qatar 26446 T 16 16
202 Qatar 26447 C 16 16
203 Qatar 26448 T 16 16
204 Qatar 26449 A 16 16
205 Qatar 26450 G 16 16
206 Qatar 26451 A 16 16
207 Qatar 26452 G 16 16
208 Qatar 26453 T 16 16
209 Qatar 26454 T 16 16
210 Qatar 26455 C 16 16
211 Qatar 26456 C 16 16
212 Qatar 26457 T 16 16
213 Qatar 26458 G 16 16
214 Qatar 26459 A 16 16
215 Qatar 26460 T 16 16
216 Qatar 26461 C 16 16
217 Qatar 26462 T 16 16
218 Qatar 26463 T 16 16
219 Qatar 26464 C 16 16
220 Qatar 26465 T 16 16
221 Qatar 26466 G 16 16
222 Qatar 26467 G 16 16
223 Qatar 26468 T 16 16
224 Qatar 26469 C 16 16
225 Qatar 26470 T 16 16
226 Qatar 26471 A 16 16
227 Qatar 26472 A 16 16