National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12 1                                
C     9                                  
D     3 1                                
E     6                                  
F     15         1                        
G     3                                  
I     9                                  
K     6                                  
L     43         1       3                
M     3                                  
N     15                                  
P     6                 1                
R     9                                  
S     24         2                 2      
T     12             2                    
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Portugal 26245 A 2422 2422
1 Portugal 26246 T 2422 2422
2 Portugal 26247 G 2422 2422
3 Portugal 26248 T 2422 2422
4 Portugal 26249 A 2422 2422
5 Portugal 26250 C 2422 2422
6 Portugal 26251 T 2422 2422
7 Portugal 26252 C 2422 2422
8 Portugal 26253 A T 2422 2421 Ser3Ser
9 Portugal 26254 T 2422 2422
10 Portugal 26255 T 2422 2422
11 Portugal 26256 C 2422 2422
12 Portugal 26257 G 2422 2422
13 Portugal 26258 T 2422 2422
14 Portugal 26259 T 2422 2422
15 Portugal 26260 T 2422 2422
16 Portugal 26261 C 2422 2422
17 Portugal 26262 G 2422 2422
18 Portugal 26263 G 2422 2422
19 Portugal 26264 A 2422 2422
20 Portugal 26265 A 2422 2422
21 Portugal 26266 G 2422 2422
22 Portugal 26267 A 2422 2422
23 Portugal 26268 G 2422 2422
24 Portugal 26269 A 2422 2422
25 Portugal 26270 C T 2422 2420 Thr9Ile
26 Portugal 26271 A 2422 2422
27 Portugal 26272 G 2422 2422
28 Portugal 26273 G 2422 2422
29 Portugal 26274 T 2422 2422
30 Portugal 26275 A 2422 2422
31 Portugal 26276 C 2422 2422
32 Portugal 26277 G 2422 2422
33 Portugal 26278 T 2422 2422
34 Portugal 26279 T 2422 2422
35 Portugal 26280 A 2422 2422
36 Portugal 26281 A 2422 2422
37 Portugal 26282 T 2422 2422
38 Portugal 26283 A 2422 2422
39 Portugal 26284 G 2422 2422
40 Portugal 26285 T 2422 2422
41 Portugal 26286 T 2422 2422
42 Portugal 26287 A 2422 2422
43 Portugal 26288 A 2422 2422
44 Portugal 26289 T 2422 2422
45 Portugal 26290 A 2422 2422
46 Portugal 26291 G 2422 2422
47 Portugal 26292 C 2422 2422
48 Portugal 26293 G 2422 2422
49 Portugal 26294 T 2422 2422
50 Portugal 26295 A 2422 2422
51 Portugal 26296 C 2422 2422
52 Portugal 26297 T 2422 2422
53 Portugal 26298 T 2422 2422
54 Portugal 26299 C T 2422 2421 Leu19Phe
55 Portugal 26300 T 2422 2422
56 Portugal 26301 T G 2422 2419 Leu19Leu
57 Portugal 26302 T 2422 2422
58 Portugal 26303 T 2422 2422
59 Portugal 26304 T 2422 2422
60 Portugal 26305 C 2422 2422
61 Portugal 26306 T 2422 2422
62 Portugal 26307 T 2422 2422
63 Portugal 26308 G 2422 2422
64 Portugal 26309 C 2421 2421
65 Portugal 26310 T 2421 2421
66 Portugal 26311 T 2421 2421
67 Portugal 26312 T 2421 2421
68 Portugal 26313 C T 2421 2419 Phe23Phe
69 Portugal 26314 G 2421 2421
70 Portugal 26315 T 2421 2421
71 Portugal 26316 G 2421 2421
72 Portugal 26317 G 2421 2421
73 Portugal 26318 T 2421 2421
74 Portugal 26319 A 2421 2421
75 Portugal 26320 T 2421 2421
76 Portugal 26321 T 2421 2421
77 Portugal 26322 C 2421 2421
78 Portugal 26323 T 2421 2421
79 Portugal 26324 T 2421 2421
80 Portugal 26325 G 2421 2421
81 Portugal 26326 C 2421 2421
82 Portugal 26327 T 2421 2421
83 Portugal 26328 A 2421 2421
84 Portugal 26329 G 2421 2421
85 Portugal 26330 T 2421 2421
86 Portugal 26331 T 2421 2421
87 Portugal 26332 A 2421 2421
88 Portugal 26333 C T 2421 2420 Thr30Ile
89 Portugal 26334 A 2421 2421
90 Portugal 26335 C 2421 2421
91 Portugal 26336 T 2421 2421
92 Portugal 26337 A 2421 2421
93 Portugal 26338 G 2421 2421
94 Portugal 26339 C 2421 2421
95 Portugal 26340 C T 2421 2420 Ala32Ala
96 Portugal 26341 A 2421 2421
97 Portugal 26342 T 2421 2421
98 Portugal 26343 C 2421 2421
99 Portugal 26344 C 2421 2421
100 Portugal 26345 T 2421 2421
101 Portugal 26346 T 2421 2421
102 Portugal 26347 A 2421 2421
103 Portugal 26348 C 2421 2421
104 Portugal 26349 T 2421 2421
105 Portugal 26350 G 2421 2421
106 Portugal 26351 C 2421 2421
107 Portugal 26352 G 2421 2421
108 Portugal 26353 C 2421 2421
109 Portugal 26354 T 2421 2421
110 Portugal 26355 T 2421 2421
111 Portugal 26356 C 2421 2421
112 Portugal 26357 G 2421 2421
113 Portugal 26358 A 2421 2421
114 Portugal 26359 T 2421 2421
115 Portugal 26360 T 2421 2421
116 Portugal 26361 G 2421 2421
117 Portugal 26362 T 2421 2421
118 Portugal 26363 G 2421 2421
119 Portugal 26364 T 2421 2421
120 Portugal 26365 G 2421 2421
121 Portugal 26366 C 2421 2421
122 Portugal 26367 G 2421 2421
123 Portugal 26368 T 2421 2421
124 Portugal 26369 A 2421 2421
125 Portugal 26370 C 2421 2421
126 Portugal 26371 T 2421 2421
127 Portugal 26372 G 2421 2421
128 Portugal 26373 C 2421 2421
129 Portugal 26374 T 2421 2421
130 Portugal 26375 G 2421 2421
131 Portugal 26376 C 2421 2421
132 Portugal 26377 A 2421 2421
133 Portugal 26378 A 2421 2421
134 Portugal 26379 T 2421 2421
135 Portugal 26380 A 2421 2421
136 Portugal 26381 T 2421 2421
137 Portugal 26382 T 2421 2421
138 Portugal 26383 G 2421 2421
139 Portugal 26384 T 2421 2421
140 Portugal 26385 T 2421 2421
141 Portugal 26386 A 2421 2421
142 Portugal 26387 A 2421 2421
143 Portugal 26388 C 2421 2421
144 Portugal 26389 G 2421 2421
145 Portugal 26390 T 2421 2421
146 Portugal 26391 G 2421 2421
147 Portugal 26392 A 2421 2421
148 Portugal 26393 G 2421 2421
149 Portugal 26394 T 2421 2421
150 Portugal 26395 C 2421 2421
151 Portugal 26396 T 2421 2421
152 Portugal 26397 T 2421 2421
153 Portugal 26398 G 2421 2421
154 Portugal 26399 T 2421 2421
155 Portugal 26400 A 2421 2421
156 Portugal 26401 A 2421 2421
157 Portugal 26402 A 2421 2421
158 Portugal 26403 A 2421 2421
159 Portugal 26404 C 2421 2421
160 Portugal 26405 C 2421 2421
161 Portugal 26406 T 2421 2421
162 Portugal 26407 T 2421 2421
163 Portugal 26408 C T 2421 2418 Ser55Phe
164 Portugal 26409 T 2421 2421
165 Portugal 26410 T 2421 2421
166 Portugal 26411 T 2421 2421
167 Portugal 26412 T 2421 2421
168 Portugal 26413 T 2421 2421
169 Portugal 26414 A 2421 2421
170 Portugal 26415 C 2421 2421
171 Portugal 26416 G 2421 2421
172 Portugal 26417 T 2421 2421
173 Portugal 26418 T 2421 2421
174 Portugal 26419 T 2421 2421
175 Portugal 26420 A 2421 2421
176 Portugal 26421 C 2421 2421
177 Portugal 26422 T 2421 2421
178 Portugal 26423 C 2421 2421
179 Portugal 26424 T C 2421 2420 Ser60Ser
180 Portugal 26425 C 2420 2420
181 Portugal 26426 G 2420 2420
182 Portugal 26427 T 2420 2420
183 Portugal 26428 G 2420 2420
184 Portugal 26429 T 2420 2420
185 Portugal 26430 T 2420 2420
186 Portugal 26431 A 2420 2420
187 Portugal 26432 A 2420 2420
188 Portugal 26433 A 2420 2420
189 Portugal 26434 A 2420 2420
190 Portugal 26435 A 2420 2420
191 Portugal 26436 T 2420 2420
192 Portugal 26437 C 2420 2420
193 Portugal 26438 T 2420 2420
194 Portugal 26439 G T 2420 2419 Leu65Leu
195 Portugal 26440 A 2420 2420
196 Portugal 26441 A 2420 2420
197 Portugal 26442 T 2420 2420
198 Portugal 26443 T 2420 2420
199 Portugal 26444 C 2420 2420
200 Portugal 26445 T 2420 2420
201 Portugal 26446 T 2420 2420
202 Portugal 26447 C T 2420 2417 Ser68Phe
203 Portugal 26448 T 2420 2420
204 Portugal 26449 A 2420 2420
205 Portugal 26450 G 2420 2420
206 Portugal 26451 A 2420 2420
207 Portugal 26452 G 2420 2420
208 Portugal 26453 T 2420 2420
209 Portugal 26454 T 2420 2420
210 Portugal 26455 C 2420 2420
211 Portugal 26456 C T 2420 2419 Pro71Leu
212 Portugal 26457 T 2420 2420
213 Portugal 26458 G 2420 2420
214 Portugal 26459 A C 2420 2419 Asp72Ala
215 Portugal 26460 T 2420 2420
216 Portugal 26461 C 2420 2420
217 Portugal 26462 T 2420 2420
218 Portugal 26463 T 2420 2420
219 Portugal 26464 C T 2420 2419 Leu74Leu
220 Portugal 26465 T 2420 2420
221 Portugal 26466 G 2420 2419
222 Portugal 26467 G 2420 2420
223 Portugal 26468 T 2420 2420
224 Portugal 26469 C 2420 2420
225 Portugal 26470 T 2420 2420
226 Portugal 26471 A 2420 2420
227 Portugal 26472 A 2420 2420