National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15         1                        
G     3                                  
I     9                                  
K     6                                  
L     43                 1                
M     3                                  
N     15                                  
P     6                                  
R     9             1                    
S     24                           1      
T     12                                  
V     39         1                     1  
Y     12                                 1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Poland 26245 A 434 434
1 Poland 26246 T 434 434
2 Poland 26247 G 434 434
3 Poland 26248 T 434 434
4 Poland 26249 A 434 434
5 Poland 26250 C 434 434
6 Poland 26251 T 434 434
7 Poland 26252 C 434 434
8 Poland 26253 A 434 434
9 Poland 26254 T 434 434
10 Poland 26255 T 434 434
11 Poland 26256 C 434 434
12 Poland 26257 G 434 434
13 Poland 26258 T 434 434
14 Poland 26259 T 434 434
15 Poland 26260 T 434 434
16 Poland 26261 C 434 434
17 Poland 26262 G 434 434
18 Poland 26263 G 434 434
19 Poland 26264 A 434 434
20 Poland 26265 A 434 434
21 Poland 26266 G 434 434
22 Poland 26267 A 434 434
23 Poland 26268 G 434 434
24 Poland 26269 A 434 434
25 Poland 26270 C 434 434
26 Poland 26271 A 434 434
27 Poland 26272 G 434 434
28 Poland 26273 G 434 434
29 Poland 26274 T 434 434
30 Poland 26275 A 434 434
31 Poland 26276 C 434 434
32 Poland 26277 G 434 434
33 Poland 26278 T 434 434
34 Poland 26279 T 434 434
35 Poland 26280 A 434 434
36 Poland 26281 A 434 434
37 Poland 26282 T 434 434
38 Poland 26283 A 434 434
39 Poland 26284 G 434 434
40 Poland 26285 T 434 434
41 Poland 26286 T 434 434
42 Poland 26287 A 434 434
43 Poland 26288 A 434 434
44 Poland 26289 T 434 434
45 Poland 26290 A 434 434
46 Poland 26291 G 434 434
47 Poland 26292 C 434 434
48 Poland 26293 G 434 434
49 Poland 26294 T 434 434
50 Poland 26295 A 434 434
51 Poland 26296 C 434 434
52 Poland 26297 T 434 434
53 Poland 26298 T 434 434
54 Poland 26299 C 434 434
55 Poland 26300 T 434 434
56 Poland 26301 T 434 434
57 Poland 26302 T 434 434
58 Poland 26303 T 434 434
59 Poland 26304 T 434 434
60 Poland 26305 C 434 434
61 Poland 26306 T 434 434
62 Poland 26307 T 434 434
63 Poland 26308 G 434 434
64 Poland 26309 C 434 434
65 Poland 26310 T 434 434
66 Poland 26311 T 434 434
67 Poland 26312 T 434 434
68 Poland 26313 C T 434 405 Phe23Phe
69 Poland 26314 G 434 434
70 Poland 26315 T 434 434
71 Poland 26316 G 434 434
72 Poland 26317 G 434 434
73 Poland 26318 T 434 434
74 Poland 26319 A G 434 431 Val25Val
75 Poland 26320 T 434 434
76 Poland 26321 T 434 434
77 Poland 26322 C 434 434
78 Poland 26323 T 434 434
79 Poland 26324 T 434 434
80 Poland 26325 G 434 434
81 Poland 26326 C 434 434
82 Poland 26327 T 434 434
83 Poland 26328 A 434 434
84 Poland 26329 G 434 434
85 Poland 26330 T 434 434
86 Poland 26331 T 434 434
87 Poland 26332 A 434 434
88 Poland 26333 C 434 434
89 Poland 26334 A 434 434
90 Poland 26335 C 434 434
91 Poland 26336 T 434 434
92 Poland 26337 A 434 434
93 Poland 26338 G 434 434
94 Poland 26339 C 434 434
95 Poland 26340 C 434 434
96 Poland 26341 A 434 434
97 Poland 26342 T 434 434
98 Poland 26343 C 434 434
99 Poland 26344 C 434 434
100 Poland 26345 T 434 434
101 Poland 26346 T 434 434
102 Poland 26347 A 434 434
103 Poland 26348 C 434 434
104 Poland 26349 T 434 434
105 Poland 26350 G 434 434
106 Poland 26351 C 434 434
107 Poland 26352 G 434 434
108 Poland 26353 C 434 434
109 Poland 26354 T 434 434
110 Poland 26355 T 434 434
111 Poland 26356 C 434 434
112 Poland 26357 G 434 434
113 Poland 26358 A 434 434
114 Poland 26359 T 434 434
115 Poland 26360 T 434 434
116 Poland 26361 G 434 434
117 Poland 26362 T 434 434
118 Poland 26363 G 434 434
119 Poland 26364 T 434 434
120 Poland 26365 G 434 434
121 Poland 26366 C 434 434
122 Poland 26367 G 434 434
123 Poland 26368 T 434 434
124 Poland 26369 A 434 434
125 Poland 26370 C 434 434
126 Poland 26371 T 434 434
127 Poland 26372 G 434 434
128 Poland 26373 C 434 434
129 Poland 26374 T 434 434
130 Poland 26375 G 434 434
131 Poland 26376 C 434 434
132 Poland 26377 A 434 434
133 Poland 26378 A 434 434
134 Poland 26379 T 434 434
135 Poland 26380 A 434 434
136 Poland 26381 T 434 434
137 Poland 26382 T 434 434
138 Poland 26383 G 434 434
139 Poland 26384 T 434 434
140 Poland 26385 T 434 434
141 Poland 26386 A 434 434
142 Poland 26387 A 434 434
143 Poland 26388 C 434 434
144 Poland 26389 G 434 434
145 Poland 26390 T 434 434
146 Poland 26391 G 434 434
147 Poland 26392 A 434 434
148 Poland 26393 G 434 434
149 Poland 26394 T 434 434
150 Poland 26395 C 434 434
151 Poland 26396 T 434 434
152 Poland 26397 T 434 434
153 Poland 26398 G 434 434
154 Poland 26399 T 434 434
155 Poland 26400 A 434 434
156 Poland 26401 A 434 434
157 Poland 26402 A 434 434
158 Poland 26403 A 434 434
159 Poland 26404 C 434 434
160 Poland 26405 C 434 434
161 Poland 26406 T 434 434
162 Poland 26407 T 434 434
163 Poland 26408 C 434 434
164 Poland 26409 T 434 434
165 Poland 26410 T 434 434
166 Poland 26411 T 434 434
167 Poland 26412 T 434 434
168 Poland 26413 T 434 434
169 Poland 26414 A 434 434
170 Poland 26415 C T 434 433 Tyr57Tyr
171 Poland 26416 G T 434 431 Val58Phe
172 Poland 26417 T 434 434
173 Poland 26418 T 434 434
174 Poland 26419 T 434 434
175 Poland 26420 A 434 434
176 Poland 26421 C 434 434
177 Poland 26422 T 434 434
178 Poland 26423 C 434 434
179 Poland 26424 T C 434 433 Ser60Ser
180 Poland 26425 C 434 434
181 Poland 26426 G 434 434
182 Poland 26427 T 434 434
183 Poland 26428 G 434 434
184 Poland 26429 T 434 434
185 Poland 26430 T 434 434
186 Poland 26431 A 434 434
187 Poland 26432 A 434 434
188 Poland 26433 A 434 434
189 Poland 26434 A 434 434
190 Poland 26435 A 434 434
191 Poland 26436 T 434 434
192 Poland 26437 C 434 434
193 Poland 26438 T 434 434
194 Poland 26439 G 434 434
195 Poland 26440 A 434 434
196 Poland 26441 A 434 434
197 Poland 26442 T 434 434
198 Poland 26443 T 434 434
199 Poland 26444 C 434 434
200 Poland 26445 T 434 434
201 Poland 26446 T 434 434
202 Poland 26447 C 434 434
203 Poland 26448 T 434 434
204 Poland 26449 A 434 434
205 Poland 26450 G T 434 433 Arg69Ile
206 Poland 26451 A 434 434
207 Poland 26452 G 434 434
208 Poland 26453 T 434 434
209 Poland 26454 T 434 434
210 Poland 26455 C 434 434
211 Poland 26456 C 433 433
212 Poland 26457 T 433 433
213 Poland 26458 G 433 433
214 Poland 26459 A 433 433
215 Poland 26460 T 433 433
216 Poland 26461 C 433 433
217 Poland 26462 T 433 433
218 Poland 26463 T 433 433
219 Poland 26464 C T 433 425 Leu74Leu
220 Poland 26465 T 433 433
221 Poland 26466 G 433 433
222 Poland 26467 G 433 433
223 Poland 26468 T 433 433
224 Poland 26469 C 433 433
225 Poland 26470 T 433 433
226 Poland 26471 A 433 433
227 Poland 26472 A 433 433