National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43         1                        
M     3                                  
N     15                                  
P     6                                  
R     9   1                              
S     24                                  
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Philippines 26245 A 35 35
1 Philippines 26246 T 35 35
2 Philippines 26247 G 35 35
3 Philippines 26248 T 35 35
4 Philippines 26249 A 35 35
5 Philippines 26250 C 35 35
6 Philippines 26251 T 35 35
7 Philippines 26252 C 35 35
8 Philippines 26253 A 35 35
9 Philippines 26254 T 35 35
10 Philippines 26255 T 35 35
11 Philippines 26256 C 35 35
12 Philippines 26257 G 35 35
13 Philippines 26258 T 35 35
14 Philippines 26259 T 35 35
15 Philippines 26260 T 35 35
16 Philippines 26261 C 35 35
17 Philippines 26262 G 35 35
18 Philippines 26263 G 35 35
19 Philippines 26264 A 35 35
20 Philippines 26265 A 35 35
21 Philippines 26266 G 35 35
22 Philippines 26267 A 35 35
23 Philippines 26268 G 35 35
24 Philippines 26269 A 35 35
25 Philippines 26270 C 35 35
26 Philippines 26271 A 35 35
27 Philippines 26272 G 35 35
28 Philippines 26273 G 35 35
29 Philippines 26274 T 35 35
30 Philippines 26275 A 35 35
31 Philippines 26276 C 35 35
32 Philippines 26277 G 35 35
33 Philippines 26278 T 35 35
34 Philippines 26279 T 35 35
35 Philippines 26280 A 35 35
36 Philippines 26281 A 35 35
37 Philippines 26282 T 35 35
38 Philippines 26283 A 35 35
39 Philippines 26284 G 35 35
40 Philippines 26285 T 35 35
41 Philippines 26286 T 35 35
42 Philippines 26287 A 35 35
43 Philippines 26288 A 35 35
44 Philippines 26289 T 35 35
45 Philippines 26290 A 35 35
46 Philippines 26291 G 34 34
47 Philippines 26292 C 34 34
48 Philippines 26293 G 34 34
49 Philippines 26294 T 34 34
50 Philippines 26295 A 34 34
51 Philippines 26296 C 34 34
52 Philippines 26297 T 34 34
53 Philippines 26298 T 34 34
54 Philippines 26299 C 34 34
55 Philippines 26300 T 34 34
56 Philippines 26301 T 34 34
57 Philippines 26302 T 34 34
58 Philippines 26303 T 34 34
59 Philippines 26304 T 34 34
60 Philippines 26305 C T 34 33 Leu21Phe
61 Philippines 26306 T 34 34
62 Philippines 26307 T 34 34
63 Philippines 26308 G 34 34
64 Philippines 26309 C 34 34
65 Philippines 26310 T 34 34
66 Philippines 26311 T 34 34
67 Philippines 26312 T 34 34
68 Philippines 26313 C 34 34
69 Philippines 26314 G 34 34
70 Philippines 26315 T 34 34
71 Philippines 26316 G 34 34
72 Philippines 26317 G 34 34
73 Philippines 26318 T 34 34
74 Philippines 26319 A 34 34
75 Philippines 26320 T 34 34
76 Philippines 26321 T 34 34
77 Philippines 26322 C 34 34
78 Philippines 26323 T 34 34
79 Philippines 26324 T 34 34
80 Philippines 26325 G 34 34
81 Philippines 26326 C 34 34
82 Philippines 26327 T 34 34
83 Philippines 26328 A 34 34
84 Philippines 26329 G 34 34
85 Philippines 26330 T 34 34
86 Philippines 26331 T 34 34
87 Philippines 26332 A 34 34
88 Philippines 26333 C 34 34
89 Philippines 26334 A 34 34
90 Philippines 26335 C 34 34
91 Philippines 26336 T 34 34
92 Philippines 26337 A 34 34
93 Philippines 26338 G 34 34
94 Philippines 26339 C 34 34
95 Philippines 26340 C 34 34
96 Philippines 26341 A 34 34
97 Philippines 26342 T 34 34
98 Philippines 26343 C 34 34
99 Philippines 26344 C 34 34
100 Philippines 26345 T 34 34
101 Philippines 26346 T 34 34
102 Philippines 26347 A 34 34
103 Philippines 26348 C 34 34
104 Philippines 26349 T 34 34
105 Philippines 26350 G 34 34
106 Philippines 26351 C 34 34
107 Philippines 26352 G 34 34
108 Philippines 26353 C 34 34
109 Philippines 26354 T 34 34
110 Philippines 26355 T 34 34
111 Philippines 26356 C 34 34
112 Philippines 26357 G 34 34
113 Philippines 26358 A 34 34
114 Philippines 26359 T 34 34
115 Philippines 26360 T 34 34
116 Philippines 26361 G 34 34
117 Philippines 26362 T 34 34
118 Philippines 26363 G 34 34
119 Philippines 26364 T 34 34
120 Philippines 26365 G 34 34
121 Philippines 26366 C 34 34
122 Philippines 26367 G 34 34
123 Philippines 26368 T 34 34
124 Philippines 26369 A 34 34
125 Philippines 26370 C 34 34
126 Philippines 26371 T 34 34
127 Philippines 26372 G 34 34
128 Philippines 26373 C 34 34
129 Philippines 26374 T 34 34
130 Philippines 26375 G 34 34
131 Philippines 26376 C 34 34
132 Philippines 26377 A 34 34
133 Philippines 26378 A 34 34
134 Philippines 26379 T 34 34
135 Philippines 26380 A 34 34
136 Philippines 26381 T 34 34
137 Philippines 26382 T 34 34
138 Philippines 26383 G 34 34
139 Philippines 26384 T 34 34
140 Philippines 26385 T 34 34
141 Philippines 26386 A 34 34
142 Philippines 26387 A 34 34
143 Philippines 26388 C 34 34
144 Philippines 26389 G 34 34
145 Philippines 26390 T 34 34
146 Philippines 26391 G 34 34
147 Philippines 26392 A 34 34
148 Philippines 26393 G 34 34
149 Philippines 26394 T 34 34
150 Philippines 26395 C 34 34
151 Philippines 26396 T 34 34
152 Philippines 26397 T 34 34
153 Philippines 26398 G 34 34
154 Philippines 26399 T 34 34
155 Philippines 26400 A 34 34
156 Philippines 26401 A 34 34
157 Philippines 26402 A 34 34
158 Philippines 26403 A 34 34
159 Philippines 26404 C 34 34
160 Philippines 26405 C 34 34
161 Philippines 26406 T 34 34
162 Philippines 26407 T 34 34
163 Philippines 26408 C 34 34
164 Philippines 26409 T 34 34
165 Philippines 26410 T 34 34
166 Philippines 26411 T 34 34
167 Philippines 26412 T 34 34
168 Philippines 26413 T 34 34
169 Philippines 26414 A 34 34
170 Philippines 26415 C 34 34
171 Philippines 26416 G 34 34
172 Philippines 26417 T 34 34
173 Philippines 26418 T 34 34
174 Philippines 26419 T 34 34
175 Philippines 26420 A 34 34
176 Philippines 26421 C 34 34
177 Philippines 26422 T 34 34
178 Philippines 26423 C 34 34
179 Philippines 26424 T 34 34
180 Philippines 26425 C T 34 33 Arg61Cys
181 Philippines 26426 G 34 34
182 Philippines 26427 T 34 34
183 Philippines 26428 G 34 34
184 Philippines 26429 T 34 34
185 Philippines 26430 T 34 34
186 Philippines 26431 A 34 34
187 Philippines 26432 A 34 34
188 Philippines 26433 A 34 34
189 Philippines 26434 A 34 34
190 Philippines 26435 A 34 34
191 Philippines 26436 T 34 34
192 Philippines 26437 C 34 34
193 Philippines 26438 T 34 34
194 Philippines 26439 G 34 34
195 Philippines 26440 A 34 34
196 Philippines 26441 A 34 34
197 Philippines 26442 T 34 34
198 Philippines 26443 T 34 34
199 Philippines 26444 C 34 34
200 Philippines 26445 T 34 34
201 Philippines 26446 T 34 34
202 Philippines 26447 C 34 34
203 Philippines 26448 T 34 34
204 Philippines 26449 A 34 34
205 Philippines 26450 G 34 34
206 Philippines 26451 A 34 34
207 Philippines 26452 G 34 34
208 Philippines 26453 T 34 34
209 Philippines 26454 T 34 34
210 Philippines 26455 C 34 34
211 Philippines 26456 C 34 34
212 Philippines 26457 T 34 34
213 Philippines 26458 G 34 34
214 Philippines 26459 A 34 34
215 Philippines 26460 T 34 34
216 Philippines 26461 C 34 34
217 Philippines 26462 T 34 34
218 Philippines 26463 T 34 34
219 Philippines 26464 C 34 34
220 Philippines 26465 T 34 34
221 Philippines 26466 G 34 34
222 Philippines 26467 G 34 34
223 Philippines 26468 T 34 34
224 Philippines 26469 C 34 34
225 Philippines 26470 T 34 34
226 Philippines 26471 A 34 34
227 Philippines 26472 A 34 34