National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15         1                        
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15                                  
P     6                 1     1          
R     9             1                    
S     24                                  
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Peru 26245 A 528 528
1 Peru 26246 T 528 528
2 Peru 26247 G 528 528
3 Peru 26248 T 528 528
4 Peru 26249 A 528 528
5 Peru 26250 C 528 528
6 Peru 26251 T 528 528
7 Peru 26252 C 528 528
8 Peru 26253 A 528 528
9 Peru 26254 T 528 528
10 Peru 26255 T 528 528
11 Peru 26256 C 528 528
12 Peru 26257 G 528 528
13 Peru 26258 T 528 528
14 Peru 26259 T 528 528
15 Peru 26260 T 528 528
16 Peru 26261 C 528 528
17 Peru 26262 G 528 528
18 Peru 26263 G 528 528
19 Peru 26264 A 528 528
20 Peru 26265 A 528 528
21 Peru 26266 G 528 528
22 Peru 26267 A 528 528
23 Peru 26268 G 528 528
24 Peru 26269 A 528 528
25 Peru 26270 C 528 528
26 Peru 26271 A 528 528
27 Peru 26272 G 528 528
28 Peru 26273 G 528 528
29 Peru 26274 T 528 528
30 Peru 26275 A 528 528
31 Peru 26276 C 528 528
32 Peru 26277 G 528 528
33 Peru 26278 T 528 528
34 Peru 26279 T 528 528
35 Peru 26280 A 528 528
36 Peru 26281 A 528 528
37 Peru 26282 T 528 528
38 Peru 26283 A 528 528
39 Peru 26284 G 528 528
40 Peru 26285 T 528 528
41 Peru 26286 T 528 528
42 Peru 26287 A 528 528
43 Peru 26288 A 528 528
44 Peru 26289 T 528 528
45 Peru 26290 A 528 528
46 Peru 26291 G 528 528
47 Peru 26292 C 528 528
48 Peru 26293 G 528 528
49 Peru 26294 T 528 528
50 Peru 26295 A 528 528
51 Peru 26296 C 528 528
52 Peru 26297 T 528 526
53 Peru 26298 T 528 526
54 Peru 26299 C 528 526
55 Peru 26300 T 528 526
56 Peru 26301 T 528 526
57 Peru 26302 T 528 526
58 Peru 26303 T 528 525
59 Peru 26304 T 528 526
60 Peru 26305 C 528 526
61 Peru 26306 T 528 526
62 Peru 26307 T 528 526
63 Peru 26308 G 528 526
64 Peru 26309 C 528 526
65 Peru 26310 T 528 526
66 Peru 26311 T 528 526
67 Peru 26312 T 528 526
68 Peru 26313 C T 528 523 Phe23Phe
69 Peru 26314 G 528 526
70 Peru 26315 T 528 526
71 Peru 26316 G 528 526
72 Peru 26317 G 528 526
73 Peru 26318 T 528 526
74 Peru 26319 A 528 526
75 Peru 26320 T 528 526
76 Peru 26321 T 528 526
77 Peru 26322 C 528 526
78 Peru 26323 T 528 526
79 Peru 26324 T 528 528
80 Peru 26325 G 528 528
81 Peru 26326 C 528 528
82 Peru 26327 T 528 528
83 Peru 26328 A 528 528
84 Peru 26329 G 528 528
85 Peru 26330 T 528 528
86 Peru 26331 T 528 528
87 Peru 26332 A 528 528
88 Peru 26333 C 528 528
89 Peru 26334 A 528 528
90 Peru 26335 C 528 528
91 Peru 26336 T 528 528
92 Peru 26337 A 528 528
93 Peru 26338 G 528 528
94 Peru 26339 C 528 528
95 Peru 26340 C 528 528
96 Peru 26341 A 528 528
97 Peru 26342 T 528 528
98 Peru 26343 C 528 528
99 Peru 26344 C 528 528
100 Peru 26345 T 528 528
101 Peru 26346 T 528 528
102 Peru 26347 A 528 528
103 Peru 26348 C 528 528
104 Peru 26349 T 528 528
105 Peru 26350 G 528 528
106 Peru 26351 C 528 528
107 Peru 26352 G 528 528
108 Peru 26353 C 528 528
109 Peru 26354 T 528 528
110 Peru 26355 T 528 528
111 Peru 26356 C 528 528
112 Peru 26357 G 528 528
113 Peru 26358 A 528 528
114 Peru 26359 T 528 528
115 Peru 26360 T 528 528
116 Peru 26361 G 528 528
117 Peru 26362 T 528 528
118 Peru 26363 G 528 528
119 Peru 26364 T 528 528
120 Peru 26365 G 528 528
121 Peru 26366 C 528 528
122 Peru 26367 G 528 528
123 Peru 26368 T 528 528
124 Peru 26369 A 528 528
125 Peru 26370 C 528 528
126 Peru 26371 T 528 528
127 Peru 26372 G 528 528
128 Peru 26373 C 528 528
129 Peru 26374 T 528 528
130 Peru 26375 G 528 528
131 Peru 26376 C 528 528
132 Peru 26377 A 528 528
133 Peru 26378 A 528 528
134 Peru 26379 T 528 528
135 Peru 26380 A 528 528
136 Peru 26381 T 528 528
137 Peru 26382 T 528 528
138 Peru 26383 G 528 528
139 Peru 26384 T 528 528
140 Peru 26385 T 528 528
141 Peru 26386 A 528 528
142 Peru 26387 A 528 528
143 Peru 26388 C 528 528
144 Peru 26389 G 528 528
145 Peru 26390 T 528 528
146 Peru 26391 G 528 528
147 Peru 26392 A 528 528
148 Peru 26393 G 528 528
149 Peru 26394 T 528 528
150 Peru 26395 C 528 528
151 Peru 26396 T 528 528
152 Peru 26397 T 528 528
153 Peru 26398 G 528 528
154 Peru 26399 T 528 528
155 Peru 26400 A 528 528
156 Peru 26401 A 528 528
157 Peru 26402 A 528 528
158 Peru 26403 A 528 528
159 Peru 26404 C 528 528
160 Peru 26405 C 528 528
161 Peru 26406 T 528 528
162 Peru 26407 T 528 528
163 Peru 26408 C 528 528
164 Peru 26409 T 528 528
165 Peru 26410 T 528 528
166 Peru 26411 T 528 528
167 Peru 26412 T 528 528
168 Peru 26413 T 528 528
169 Peru 26414 A 528 528
170 Peru 26415 C 528 528
171 Peru 26416 G 528 528
172 Peru 26417 T 528 528
173 Peru 26418 T 528 528
174 Peru 26419 T 528 528
175 Peru 26420 A 528 528
176 Peru 26421 C 528 528
177 Peru 26422 T 528 528
178 Peru 26423 C 528 528
179 Peru 26424 T 528 528
180 Peru 26425 C 528 528
181 Peru 26426 G 528 528
182 Peru 26427 T 528 528
183 Peru 26428 G 528 528
184 Peru 26429 T 528 528
185 Peru 26430 T 528 528
186 Peru 26431 A 528 528
187 Peru 26432 A 528 528
188 Peru 26433 A 528 528
189 Peru 26434 A 528 528
190 Peru 26435 A 528 528
191 Peru 26436 T 528 528
192 Peru 26437 C 528 528
193 Peru 26438 T 528 528
194 Peru 26439 G 528 528
195 Peru 26440 A 528 528
196 Peru 26441 A 528 528
197 Peru 26442 T 528 528
198 Peru 26443 T 528 528
199 Peru 26444 C 528 528
200 Peru 26445 T 528 528
201 Peru 26446 T 528 528
202 Peru 26447 C 526 526
203 Peru 26448 T 526 526
204 Peru 26449 A 526 526
205 Peru 26450 G T 526 523 Arg69Ile
206 Peru 26451 A 526 526
207 Peru 26452 G 526 526
208 Peru 26453 T 526 526
209 Peru 26454 T 526 526
210 Peru 26455 C 526 526
211 Peru 26456 C T 526 524 Pro71Leu
212 Peru 26457 T C 526 525 Pro71Pro
213 Peru 26458 G 526 526
214 Peru 26459 A 526 526
215 Peru 26460 T 526 526
216 Peru 26461 C 526 526
217 Peru 26462 T 526 526
218 Peru 26463 T 526 526
219 Peru 26464 C 526 526
220 Peru 26465 T 526 526
221 Peru 26466 G 526 526
222 Peru 26467 G 526 526
223 Peru 26468 T 526 526
224 Peru 26469 C 526 526
225 Peru 26470 T 526 526
226 Peru 26471 A 526 526
227 Peru 26472 A 526 526