National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15         1                        
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24                                  
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Pakistan 26245 A 57 57
1 Pakistan 26246 T 57 57
2 Pakistan 26247 G 57 57
3 Pakistan 26248 T 57 57
4 Pakistan 26249 A 57 57
5 Pakistan 26250 C 57 57
6 Pakistan 26251 T 57 57
7 Pakistan 26252 C 57 57
8 Pakistan 26253 A 57 57
9 Pakistan 26254 T 57 57
10 Pakistan 26255 T 57 57
11 Pakistan 26256 C 57 57
12 Pakistan 26257 G 57 57
13 Pakistan 26258 T 57 57
14 Pakistan 26259 T 57 57
15 Pakistan 26260 T 57 57
16 Pakistan 26261 C 57 57
17 Pakistan 26262 G 57 57
18 Pakistan 26263 G 57 57
19 Pakistan 26264 A 57 57
20 Pakistan 26265 A 57 57
21 Pakistan 26266 G 57 57
22 Pakistan 26267 A 57 57
23 Pakistan 26268 G 57 57
24 Pakistan 26269 A 57 57
25 Pakistan 26270 C 57 57
26 Pakistan 26271 A 57 57
27 Pakistan 26272 G 57 57
28 Pakistan 26273 G 57 57
29 Pakistan 26274 T 57 57
30 Pakistan 26275 A 57 57
31 Pakistan 26276 C 57 57
32 Pakistan 26277 G 57 57
33 Pakistan 26278 T 57 57
34 Pakistan 26279 T 57 57
35 Pakistan 26280 A 57 57
36 Pakistan 26281 A 57 57
37 Pakistan 26282 T 57 57
38 Pakistan 26283 A 57 57
39 Pakistan 26284 G 57 57
40 Pakistan 26285 T 57 57
41 Pakistan 26286 T 57 57
42 Pakistan 26287 A 57 57
43 Pakistan 26288 A 57 57
44 Pakistan 26289 T 57 57
45 Pakistan 26290 A 57 57
46 Pakistan 26291 G 57 57
47 Pakistan 26292 C 57 57
48 Pakistan 26293 G 57 57
49 Pakistan 26294 T 57 57
50 Pakistan 26295 A 57 57
51 Pakistan 26296 C 57 57
52 Pakistan 26297 T 57 57
53 Pakistan 26298 T 57 57
54 Pakistan 26299 C 57 57
55 Pakistan 26300 T 57 57
56 Pakistan 26301 T 57 57
57 Pakistan 26302 T 57 57
58 Pakistan 26303 T 57 57
59 Pakistan 26304 T 57 57
60 Pakistan 26305 C 57 57
61 Pakistan 26306 T 57 57
62 Pakistan 26307 T 57 57
63 Pakistan 26308 G 57 57
64 Pakistan 26309 C 57 57
65 Pakistan 26310 T 57 57
66 Pakistan 26311 T 57 57
67 Pakistan 26312 T 57 57
68 Pakistan 26313 C T 57 55 Phe23Phe
69 Pakistan 26314 G 57 57
70 Pakistan 26315 T 57 57
71 Pakistan 26316 G 57 57
72 Pakistan 26317 G 57 57
73 Pakistan 26318 T 57 57
74 Pakistan 26319 A 57 57
75 Pakistan 26320 T 57 57
76 Pakistan 26321 T 57 57
77 Pakistan 26322 C 57 57
78 Pakistan 26323 T 57 57
79 Pakistan 26324 T 57 57
80 Pakistan 26325 G 57 57
81 Pakistan 26326 C 57 57
82 Pakistan 26327 T 57 57
83 Pakistan 26328 A 57 57
84 Pakistan 26329 G 57 57
85 Pakistan 26330 T 57 57
86 Pakistan 26331 T 57 57
87 Pakistan 26332 A 57 57
88 Pakistan 26333 C 57 57
89 Pakistan 26334 A 57 57
90 Pakistan 26335 C 57 57
91 Pakistan 26336 T 57 57
92 Pakistan 26337 A 57 57
93 Pakistan 26338 G 57 57
94 Pakistan 26339 C 57 57
95 Pakistan 26340 C 57 57
96 Pakistan 26341 A 57 57
97 Pakistan 26342 T 57 57
98 Pakistan 26343 C 57 57
99 Pakistan 26344 C 57 57
100 Pakistan 26345 T 57 57
101 Pakistan 26346 T 57 57
102 Pakistan 26347 A 57 57
103 Pakistan 26348 C 57 57
104 Pakistan 26349 T 57 57
105 Pakistan 26350 G 57 57
106 Pakistan 26351 C 57 57
107 Pakistan 26352 G 57 57
108 Pakistan 26353 C 57 57
109 Pakistan 26354 T 57 57
110 Pakistan 26355 T 57 57
111 Pakistan 26356 C 57 57
112 Pakistan 26357 G 57 57
113 Pakistan 26358 A 57 57
114 Pakistan 26359 T 57 57
115 Pakistan 26360 T 57 57
116 Pakistan 26361 G 57 57
117 Pakistan 26362 T 57 57
118 Pakistan 26363 G 57 57
119 Pakistan 26364 T 57 57
120 Pakistan 26365 G 57 57
121 Pakistan 26366 C 57 57
122 Pakistan 26367 G 57 57
123 Pakistan 26368 T 57 57
124 Pakistan 26369 A 57 57
125 Pakistan 26370 C 57 57
126 Pakistan 26371 T 57 57
127 Pakistan 26372 G 57 57
128 Pakistan 26373 C 57 57
129 Pakistan 26374 T 57 57
130 Pakistan 26375 G 57 57
131 Pakistan 26376 C 57 57
132 Pakistan 26377 A 57 57
133 Pakistan 26378 A 57 57
134 Pakistan 26379 T 57 57
135 Pakistan 26380 A 57 57
136 Pakistan 26381 T 57 57
137 Pakistan 26382 T 57 57
138 Pakistan 26383 G 57 57
139 Pakistan 26384 T 57 57
140 Pakistan 26385 T 57 57
141 Pakistan 26386 A 57 57
142 Pakistan 26387 A 57 57
143 Pakistan 26388 C 57 57
144 Pakistan 26389 G 57 57
145 Pakistan 26390 T 57 57
146 Pakistan 26391 G 57 57
147 Pakistan 26392 A 57 57
148 Pakistan 26393 G 57 57
149 Pakistan 26394 T 57 57
150 Pakistan 26395 C 57 57
151 Pakistan 26396 T 57 57
152 Pakistan 26397 T 57 57
153 Pakistan 26398 G 57 57
154 Pakistan 26399 T 57 57
155 Pakistan 26400 A 57 57
156 Pakistan 26401 A 57 57
157 Pakistan 26402 A 57 57
158 Pakistan 26403 A 57 57
159 Pakistan 26404 C 57 57
160 Pakistan 26405 C 57 57
161 Pakistan 26406 T 57 57
162 Pakistan 26407 T 57 57
163 Pakistan 26408 C 57 57
164 Pakistan 26409 T 57 57
165 Pakistan 26410 T 57 57
166 Pakistan 26411 T 57 57
167 Pakistan 26412 T 57 57
168 Pakistan 26413 T 57 57
169 Pakistan 26414 A 57 57
170 Pakistan 26415 C 57 57
171 Pakistan 26416 G 57 57
172 Pakistan 26417 T 57 57
173 Pakistan 26418 T 57 57
174 Pakistan 26419 T 57 57
175 Pakistan 26420 A 57 57
176 Pakistan 26421 C 57 57
177 Pakistan 26422 T 57 57
178 Pakistan 26423 C 57 57
179 Pakistan 26424 T 57 57
180 Pakistan 26425 C 57 57
181 Pakistan 26426 G 57 57
182 Pakistan 26427 T 57 57
183 Pakistan 26428 G 57 57
184 Pakistan 26429 T 57 57
185 Pakistan 26430 T 57 57
186 Pakistan 26431 A 57 57
187 Pakistan 26432 A 57 57
188 Pakistan 26433 A 57 57
189 Pakistan 26434 A 57 57
190 Pakistan 26435 A 57 57
191 Pakistan 26436 T 57 57
192 Pakistan 26437 C 57 57
193 Pakistan 26438 T 57 57
194 Pakistan 26439 G 57 57
195 Pakistan 26440 A 57 57
196 Pakistan 26441 A 57 57
197 Pakistan 26442 T 57 57
198 Pakistan 26443 T 57 57
199 Pakistan 26444 C 57 57
200 Pakistan 26445 T 57 57
201 Pakistan 26446 T 57 57
202 Pakistan 26447 C 56 56
203 Pakistan 26448 T 56 56
204 Pakistan 26449 A 56 56
205 Pakistan 26450 G 56 56
206 Pakistan 26451 A 56 56
207 Pakistan 26452 G 56 56
208 Pakistan 26453 T 56 56
209 Pakistan 26454 T 56 56
210 Pakistan 26455 C 56 56
211 Pakistan 26456 C 56 56
212 Pakistan 26457 T 56 56
213 Pakistan 26458 G 56 56
214 Pakistan 26459 A 56 56
215 Pakistan 26460 T 56 56
216 Pakistan 26461 C 56 56
217 Pakistan 26462 T 56 56
218 Pakistan 26463 T 56 56
219 Pakistan 26464 C 56 56
220 Pakistan 26465 T 56 56
221 Pakistan 26466 G 56 56
222 Pakistan 26467 G 56 56
223 Pakistan 26468 T 56 56
224 Pakistan 26469 C 56 56
225 Pakistan 26470 T 56 56
226 Pakistan 26471 A 56 56
227 Pakistan 26472 A 56 56