National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                 1
E     6               1                  
F     15         1                        
G     3                                  
I     9                                  
K     6                                  
L     43                 2                
M     3                                  
N     15                                  
P     6                 1                
R     9                                  
S     24         2                 1      
T     12                                  
V     39         1       1             2  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Norway 26245 A 1278 1278
1 Norway 26246 T 1278 1278
2 Norway 26247 G 1278 1278
3 Norway 26248 T 1278 1278
4 Norway 26249 A 1278 1278
5 Norway 26250 C 1278 1278
6 Norway 26251 T 1278 1278
7 Norway 26252 C 1278 1278
8 Norway 26253 A 1278 1278
9 Norway 26254 T 1278 1278
10 Norway 26255 T 1278 1278
11 Norway 26256 C 1278 1278
12 Norway 26257 G 1278 1278
13 Norway 26258 T 1278 1278
14 Norway 26259 T 1278 1278
15 Norway 26260 T 1278 1278
16 Norway 26261 C 1278 1278
17 Norway 26262 G 1278 1278
18 Norway 26263 G 1278 1278
19 Norway 26264 A 1278 1278
20 Norway 26265 A 1278 1278
21 Norway 26266 G A 1278 1277 Glu8Lys
22 Norway 26267 A 1278 1278
23 Norway 26268 G 1278 1278
24 Norway 26269 A 1278 1278
25 Norway 26270 C 1278 1278
26 Norway 26271 A 1278 1278
27 Norway 26272 G 1278 1278
28 Norway 26273 G 1278 1278
29 Norway 26274 T 1278 1278
30 Norway 26275 A 1278 1278
31 Norway 26276 C 1278 1278
32 Norway 26277 G 1278 1278
33 Norway 26278 T 1278 1278
34 Norway 26279 T 1278 1278
35 Norway 26280 A 1278 1278
36 Norway 26281 A 1278 1278
37 Norway 26282 T 1278 1278
38 Norway 26283 A 1278 1278
39 Norway 26284 G 1278 1278
40 Norway 26285 T 1278 1278
41 Norway 26286 T 1278 1278
42 Norway 26287 A 1278 1278
43 Norway 26288 A 1278 1278
44 Norway 26289 T 1278 1278
45 Norway 26290 A 1278 1278
46 Norway 26291 G 1276 1276
47 Norway 26292 C 1276 1276
48 Norway 26293 G 1276 1276
49 Norway 26294 T 1276 1276
50 Norway 26295 A 1276 1276
51 Norway 26296 C 1276 1276
52 Norway 26297 T 1276 1276
53 Norway 26298 T 1276 1276
54 Norway 26299 C 1276 1276
55 Norway 26300 T 1276 1276
56 Norway 26301 T 1276 1276
57 Norway 26302 T 1276 1276
58 Norway 26303 T 1276 1276
59 Norway 26304 T 1276 1276
60 Norway 26305 C 1276 1276
61 Norway 26306 T 1276 1276
62 Norway 26307 T 1276 1276
63 Norway 26308 G 1276 1276
64 Norway 26309 C 1276 1276
65 Norway 26310 T 1276 1276
66 Norway 26311 T 1276 1276
67 Norway 26312 T 1276 1276
68 Norway 26313 C T 1276 1219 Phe23Phe
69 Norway 26314 G T 1276 1275 Val24Leu
70 Norway 26315 T 1276 1276
71 Norway 26316 G 1276 1276
72 Norway 26317 G 1276 1276
73 Norway 26318 T 1276 1276
74 Norway 26319 A G 1276 1256 Val25Val
75 Norway 26320 T 1276 1276
76 Norway 26321 T 1276 1276
77 Norway 26322 C 1276 1276
78 Norway 26323 T 1276 1276
79 Norway 26324 T 1276 1276
80 Norway 26325 G 1276 1276
81 Norway 26326 C 1276 1276
82 Norway 26327 T 1276 1276
83 Norway 26328 A 1276 1276
84 Norway 26329 G 1276 1276
85 Norway 26330 T 1276 1276
86 Norway 26331 T 1276 1276
87 Norway 26332 A 1276 1276
88 Norway 26333 C 1276 1276
89 Norway 26334 A 1276 1276
90 Norway 26335 C 1276 1276
91 Norway 26336 T 1276 1276
92 Norway 26337 A 1276 1276
93 Norway 26338 G 1276 1276
94 Norway 26339 C 1276 1276
95 Norway 26340 C 1276 1276
96 Norway 26341 A 1276 1276
97 Norway 26342 T 1276 1276
98 Norway 26343 C 1276 1276
99 Norway 26344 C 1276 1276
100 Norway 26345 T 1276 1276
101 Norway 26346 T 1276 1276
102 Norway 26347 A 1276 1276
103 Norway 26348 C 1276 1276
104 Norway 26349 T 1276 1276
105 Norway 26350 G 1276 1276
106 Norway 26351 C 1276 1276
107 Norway 26352 G 1276 1276
108 Norway 26353 C 1276 1276
109 Norway 26354 T 1276 1276
110 Norway 26355 T 1276 1276
111 Norway 26356 C 1276 1276
112 Norway 26357 G 1276 1276
113 Norway 26358 A 1276 1276
114 Norway 26359 T 1276 1276
115 Norway 26360 T 1276 1276
116 Norway 26361 G 1276 1276
117 Norway 26362 T 1276 1276
118 Norway 26363 G 1276 1276
119 Norway 26364 T 1276 1276
120 Norway 26365 G 1276 1276
121 Norway 26366 C 1276 1276
122 Norway 26367 G 1276 1276
123 Norway 26368 T 1276 1276
124 Norway 26369 A 1276 1276
125 Norway 26370 C 1276 1276
126 Norway 26371 T 1276 1276
127 Norway 26372 G 1276 1276
128 Norway 26373 C 1276 1276
129 Norway 26374 T 1276 1276
130 Norway 26375 G 1276 1276
131 Norway 26376 C 1276 1276
132 Norway 26377 A 1276 1276
133 Norway 26378 A 1276 1276
134 Norway 26379 T 1276 1276
135 Norway 26380 A 1276 1276
136 Norway 26381 T 1276 1276
137 Norway 26382 T 1276 1276
138 Norway 26383 G 1276 1276
139 Norway 26384 T 1276 1276
140 Norway 26385 T 1276 1276
141 Norway 26386 A 1276 1276
142 Norway 26387 A 1276 1276
143 Norway 26388 C 1276 1276
144 Norway 26389 G 1276 1276
145 Norway 26390 T 1276 1276
146 Norway 26391 G 1276 1276
147 Norway 26392 A 1276 1276
148 Norway 26393 G 1276 1276
149 Norway 26394 T 1276 1276
150 Norway 26395 C 1276 1276
151 Norway 26396 T 1276 1276
152 Norway 26397 T 1276 1276
153 Norway 26398 G 1276 1276
154 Norway 26399 T 1276 1276
155 Norway 26400 A 1276 1276
156 Norway 26401 A 1276 1276
157 Norway 26402 A 1276 1276
158 Norway 26403 A 1276 1276
159 Norway 26404 C 1276 1276
160 Norway 26405 C 1276 1276
161 Norway 26406 T 1276 1276
162 Norway 26407 T 1276 1276
163 Norway 26408 C T 1276 1275 Ser55Phe
164 Norway 26409 T 1276 1276
165 Norway 26410 T 1276 1276
166 Norway 26411 T 1276 1276
167 Norway 26412 T 1276 1276
168 Norway 26413 T 1276 1276
169 Norway 26414 A 1276 1276
170 Norway 26415 C 1276 1276
171 Norway 26416 G 1276 1276
172 Norway 26417 T 1276 1276
173 Norway 26418 T 1276 1276
174 Norway 26419 T 1276 1276
175 Norway 26420 A 1276 1276
176 Norway 26421 C 1276 1276
177 Norway 26422 T 1276 1276
178 Norway 26423 C 1276 1276
179 Norway 26424 T C 1276 1275 Ser60Ser
180 Norway 26425 C 1276 1276
181 Norway 26426 G 1276 1276
182 Norway 26427 T 1276 1276
183 Norway 26428 G T 1276 1274 Val62Phe
184 Norway 26429 T 1276 1276
185 Norway 26430 T 1276 1276
186 Norway 26431 A 1276 1276
187 Norway 26432 A 1276 1276
188 Norway 26433 A 1276 1276
189 Norway 26434 A 1276 1276
190 Norway 26435 A 1276 1276
191 Norway 26436 T 1276 1276
192 Norway 26437 C 1276 1276
193 Norway 26438 T 1276 1276
194 Norway 26439 G T 1276 1275 Leu65Leu
195 Norway 26440 A 1276 1276
196 Norway 26441 A 1276 1276
197 Norway 26442 T 1276 1276
198 Norway 26443 T 1276 1276
199 Norway 26444 C 1276 1276
200 Norway 26445 T 1276 1276
201 Norway 26446 T 1276 1276
202 Norway 26447 C T 1276 1274 Ser68Phe
203 Norway 26448 T 1276 1276
204 Norway 26449 A 1276 1276
205 Norway 26450 G 1276 1276
206 Norway 26451 A 1276 1276
207 Norway 26452 G 1276 1276
208 Norway 26453 T 1276 1276
209 Norway 26454 T 1276 1276
210 Norway 26455 C 1276 1276
211 Norway 26456 C T 1276 1275 Pro71Leu
212 Norway 26457 T 1276 1276
213 Norway 26458 G T 1276 1275 Asp72Tyr
214 Norway 26459 A 1276 1276
215 Norway 26460 T 1276 1276
216 Norway 26461 C 1276 1276
217 Norway 26462 T 1276 1276
218 Norway 26463 T 1276 1276
219 Norway 26464 C T 1276 1271 Leu74Leu
220 Norway 26465 T 1276 1276
221 Norway 26466 G 1276 1276
222 Norway 26467 G 1276 1276
223 Norway 26468 T 1276 1276
224 Norway 26469 C T 1276 1275 Val75Val
225 Norway 26470 T 1276 1276
226 Norway 26471 A 1276 1276
227 Norway 26472 A 1276 1276