National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24                                  
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Nepal 26245 A 15 15
1 Nepal 26246 T 15 15
2 Nepal 26247 G 15 15
3 Nepal 26248 T 15 15
4 Nepal 26249 A 15 15
5 Nepal 26250 C 15 15
6 Nepal 26251 T 15 15
7 Nepal 26252 C 15 15
8 Nepal 26253 A 15 15
9 Nepal 26254 T 15 15
10 Nepal 26255 T 15 15
11 Nepal 26256 C 15 15
12 Nepal 26257 G 15 15
13 Nepal 26258 T 15 15
14 Nepal 26259 T 15 15
15 Nepal 26260 T 15 15
16 Nepal 26261 C 15 15
17 Nepal 26262 G 15 15
18 Nepal 26263 G 15 15
19 Nepal 26264 A 15 15
20 Nepal 26265 A 15 15
21 Nepal 26266 G 15 15
22 Nepal 26267 A 15 15
23 Nepal 26268 G 15 15
24 Nepal 26269 A 15 15
25 Nepal 26270 C 15 15
26 Nepal 26271 A 15 15
27 Nepal 26272 G 15 15
28 Nepal 26273 G 15 15
29 Nepal 26274 T 15 15
30 Nepal 26275 A 15 15
31 Nepal 26276 C 15 15
32 Nepal 26277 G 15 15
33 Nepal 26278 T 15 15
34 Nepal 26279 T 15 15
35 Nepal 26280 A 15 15
36 Nepal 26281 A 15 15
37 Nepal 26282 T 15 15
38 Nepal 26283 A 15 15
39 Nepal 26284 G 15 15
40 Nepal 26285 T 15 15
41 Nepal 26286 T 15 15
42 Nepal 26287 A 15 15
43 Nepal 26288 A 15 15
44 Nepal 26289 T 15 15
45 Nepal 26290 A 15 15
46 Nepal 26291 G 15 15
47 Nepal 26292 C 15 15
48 Nepal 26293 G 15 15
49 Nepal 26294 T 15 15
50 Nepal 26295 A 15 15
51 Nepal 26296 C 15 15
52 Nepal 26297 T 15 15
53 Nepal 26298 T 15 15
54 Nepal 26299 C 15 15
55 Nepal 26300 T 15 15
56 Nepal 26301 T 15 15
57 Nepal 26302 T 15 15
58 Nepal 26303 T 15 15
59 Nepal 26304 T 15 15
60 Nepal 26305 C 15 15
61 Nepal 26306 T 15 15
62 Nepal 26307 T 15 15
63 Nepal 26308 G 15 15
64 Nepal 26309 C 15 15
65 Nepal 26310 T 15 15
66 Nepal 26311 T 15 15
67 Nepal 26312 T 15 15
68 Nepal 26313 C 15 15
69 Nepal 26314 G 15 15
70 Nepal 26315 T 15 15
71 Nepal 26316 G 15 15
72 Nepal 26317 G 15 15
73 Nepal 26318 T 15 15
74 Nepal 26319 A 15 15
75 Nepal 26320 T 15 15
76 Nepal 26321 T 15 15
77 Nepal 26322 C 15 15
78 Nepal 26323 T 15 15
79 Nepal 26324 T 15 15
80 Nepal 26325 G 15 15
81 Nepal 26326 C 15 15
82 Nepal 26327 T 15 15
83 Nepal 26328 A 15 15
84 Nepal 26329 G 15 15
85 Nepal 26330 T 15 15
86 Nepal 26331 T 15 15
87 Nepal 26332 A 15 15
88 Nepal 26333 C 15 15
89 Nepal 26334 A 15 15
90 Nepal 26335 C 15 15
91 Nepal 26336 T 15 15
92 Nepal 26337 A 15 15
93 Nepal 26338 G 15 15
94 Nepal 26339 C 15 15
95 Nepal 26340 C 15 15
96 Nepal 26341 A 15 15
97 Nepal 26342 T 15 15
98 Nepal 26343 C 15 15
99 Nepal 26344 C 15 15
100 Nepal 26345 T 15 15
101 Nepal 26346 T 15 15
102 Nepal 26347 A 15 15
103 Nepal 26348 C 15 15
104 Nepal 26349 T 15 15
105 Nepal 26350 G 15 15
106 Nepal 26351 C 15 15
107 Nepal 26352 G 15 15
108 Nepal 26353 C 15 15
109 Nepal 26354 T 15 15
110 Nepal 26355 T 15 15
111 Nepal 26356 C 15 15
112 Nepal 26357 G 15 15
113 Nepal 26358 A 15 15
114 Nepal 26359 T 15 15
115 Nepal 26360 T 15 15
116 Nepal 26361 G 15 15
117 Nepal 26362 T 15 15
118 Nepal 26363 G 15 15
119 Nepal 26364 T 15 15
120 Nepal 26365 G 15 15
121 Nepal 26366 C 15 15
122 Nepal 26367 G 15 15
123 Nepal 26368 T 15 15
124 Nepal 26369 A 15 15
125 Nepal 26370 C 15 15
126 Nepal 26371 T 15 15
127 Nepal 26372 G 15 15
128 Nepal 26373 C 15 15
129 Nepal 26374 T 15 15
130 Nepal 26375 G 15 15
131 Nepal 26376 C 15 15
132 Nepal 26377 A 15 15
133 Nepal 26378 A 15 15
134 Nepal 26379 T 15 15
135 Nepal 26380 A 15 15
136 Nepal 26381 T 15 15
137 Nepal 26382 T 15 15
138 Nepal 26383 G 15 14
139 Nepal 26384 T 15 15
140 Nepal 26385 T 15 15
141 Nepal 26386 A 15 15
142 Nepal 26387 A 15 15
143 Nepal 26388 C 15 15
144 Nepal 26389 G 15 15
145 Nepal 26390 T 15 15
146 Nepal 26391 G 15 15
147 Nepal 26392 A 15 15
148 Nepal 26393 G 15 15
149 Nepal 26394 T 15 15
150 Nepal 26395 C 15 15
151 Nepal 26396 T 15 15
152 Nepal 26397 T 15 15
153 Nepal 26398 G 15 15
154 Nepal 26399 T 15 15
155 Nepal 26400 A 15 15
156 Nepal 26401 A 15 15
157 Nepal 26402 A 15 15
158 Nepal 26403 A 15 15
159 Nepal 26404 C 15 15
160 Nepal 26405 C 15 15
161 Nepal 26406 T 15 15
162 Nepal 26407 T 15 15
163 Nepal 26408 C 15 15
164 Nepal 26409 T 15 15
165 Nepal 26410 T 15 15
166 Nepal 26411 T 15 15
167 Nepal 26412 T 15 15
168 Nepal 26413 T 15 15
169 Nepal 26414 A 15 15
170 Nepal 26415 C 15 15
171 Nepal 26416 G 15 15
172 Nepal 26417 T 15 15
173 Nepal 26418 T 15 15
174 Nepal 26419 T 15 15
175 Nepal 26420 A 15 15
176 Nepal 26421 C 15 15
177 Nepal 26422 T 15 15
178 Nepal 26423 C 15 15
179 Nepal 26424 T 15 15
180 Nepal 26425 C 15 15
181 Nepal 26426 G 15 15
182 Nepal 26427 T 15 15
183 Nepal 26428 G 15 15
184 Nepal 26429 T 15 15
185 Nepal 26430 T 15 15
186 Nepal 26431 A 15 15
187 Nepal 26432 A 15 15
188 Nepal 26433 A 15 15
189 Nepal 26434 A 15 15
190 Nepal 26435 A 15 15
191 Nepal 26436 T 15 15
192 Nepal 26437 C 15 15
193 Nepal 26438 T 15 15
194 Nepal 26439 G 15 15
195 Nepal 26440 A 15 15
196 Nepal 26441 A 15 15
197 Nepal 26442 T 15 15
198 Nepal 26443 T 15 15
199 Nepal 26444 C 15 15
200 Nepal 26445 T 15 15
201 Nepal 26446 T 15 15
202 Nepal 26447 C 15 15
203 Nepal 26448 T 15 15
204 Nepal 26449 A 15 15
205 Nepal 26450 G 15 15
206 Nepal 26451 A 15 15
207 Nepal 26452 G 15 15
208 Nepal 26453 T 15 15
209 Nepal 26454 T 15 15
210 Nepal 26455 C 15 15
211 Nepal 26456 C 15 15
212 Nepal 26457 T 15 15
213 Nepal 26458 G 15 15
214 Nepal 26459 A 15 15
215 Nepal 26460 T 15 15
216 Nepal 26461 C 15 15
217 Nepal 26462 T 15 15
218 Nepal 26463 T 15 15
219 Nepal 26464 C 15 15
220 Nepal 26465 T 15 15
221 Nepal 26466 G 15 15
222 Nepal 26467 G 15 15
223 Nepal 26468 T 15 15
224 Nepal 26469 C 15 15
225 Nepal 26470 T 15 15
226 Nepal 26471 A 15 15
227 Nepal 26472 A 15 15