National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24                                  
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Myanmar 26245 A 41 41
1 Myanmar 26246 T 41 41
2 Myanmar 26247 G 41 41
3 Myanmar 26248 T 41 41
4 Myanmar 26249 A 41 41
5 Myanmar 26250 C 41 41
6 Myanmar 26251 T 41 41
7 Myanmar 26252 C 41 41
8 Myanmar 26253 A 41 41
9 Myanmar 26254 T 41 41
10 Myanmar 26255 T 41 41
11 Myanmar 26256 C 41 41
12 Myanmar 26257 G 41 41
13 Myanmar 26258 T 41 41
14 Myanmar 26259 T 41 41
15 Myanmar 26260 T 41 41
16 Myanmar 26261 C 41 41
17 Myanmar 26262 G 41 41
18 Myanmar 26263 G 41 41
19 Myanmar 26264 A 41 41
20 Myanmar 26265 A 41 41
21 Myanmar 26266 G 41 41
22 Myanmar 26267 A 41 41
23 Myanmar 26268 G 41 41
24 Myanmar 26269 A 41 41
25 Myanmar 26270 C 41 41
26 Myanmar 26271 A 41 41
27 Myanmar 26272 G 41 41
28 Myanmar 26273 G 41 41
29 Myanmar 26274 T 41 41
30 Myanmar 26275 A 41 41
31 Myanmar 26276 C 41 41
32 Myanmar 26277 G 41 41
33 Myanmar 26278 T 41 41
34 Myanmar 26279 T 41 41
35 Myanmar 26280 A 41 41
36 Myanmar 26281 A 41 41
37 Myanmar 26282 T 41 41
38 Myanmar 26283 A 41 41
39 Myanmar 26284 G 41 41
40 Myanmar 26285 T 41 41
41 Myanmar 26286 T 41 41
42 Myanmar 26287 A 41 41
43 Myanmar 26288 A 41 41
44 Myanmar 26289 T 41 41
45 Myanmar 26290 A 41 41
46 Myanmar 26291 G 41 41
47 Myanmar 26292 C 41 41
48 Myanmar 26293 G 41 41
49 Myanmar 26294 T 41 41
50 Myanmar 26295 A 41 41
51 Myanmar 26296 C 41 41
52 Myanmar 26297 T 41 41
53 Myanmar 26298 T 41 41
54 Myanmar 26299 C 41 41
55 Myanmar 26300 T 41 41
56 Myanmar 26301 T 41 41
57 Myanmar 26302 T 41 41
58 Myanmar 26303 T 41 41
59 Myanmar 26304 T 41 41
60 Myanmar 26305 C 41 41
61 Myanmar 26306 T 41 41
62 Myanmar 26307 T 41 41
63 Myanmar 26308 G 41 41
64 Myanmar 26309 C 41 41
65 Myanmar 26310 T 41 41
66 Myanmar 26311 T 41 41
67 Myanmar 26312 T 41 41
68 Myanmar 26313 C 41 41
69 Myanmar 26314 G 41 41
70 Myanmar 26315 T 41 41
71 Myanmar 26316 G 41 41
72 Myanmar 26317 G 41 41
73 Myanmar 26318 T 41 41
74 Myanmar 26319 A 41 41
75 Myanmar 26320 T 41 41
76 Myanmar 26321 T 41 41
77 Myanmar 26322 C 41 41
78 Myanmar 26323 T 41 41
79 Myanmar 26324 T 41 41
80 Myanmar 26325 G 41 41
81 Myanmar 26326 C 41 41
82 Myanmar 26327 T 41 41
83 Myanmar 26328 A 41 41
84 Myanmar 26329 G 41 41
85 Myanmar 26330 T 41 41
86 Myanmar 26331 T 41 41
87 Myanmar 26332 A 41 41
88 Myanmar 26333 C 41 41
89 Myanmar 26334 A 41 41
90 Myanmar 26335 C 41 41
91 Myanmar 26336 T 41 41
92 Myanmar 26337 A 41 41
93 Myanmar 26338 G 41 41
94 Myanmar 26339 C 41 41
95 Myanmar 26340 C 41 41
96 Myanmar 26341 A 41 41
97 Myanmar 26342 T 41 41
98 Myanmar 26343 C 41 41
99 Myanmar 26344 C 41 41
100 Myanmar 26345 T 41 41
101 Myanmar 26346 T 41 41
102 Myanmar 26347 A 41 41
103 Myanmar 26348 C 41 41
104 Myanmar 26349 T 41 41
105 Myanmar 26350 G 41 41
106 Myanmar 26351 C 41 41
107 Myanmar 26352 G 41 41
108 Myanmar 26353 C 41 41
109 Myanmar 26354 T 41 41
110 Myanmar 26355 T 41 41
111 Myanmar 26356 C 41 41
112 Myanmar 26357 G 41 41
113 Myanmar 26358 A 41 41
114 Myanmar 26359 T 41 41
115 Myanmar 26360 T 41 41
116 Myanmar 26361 G 41 41
117 Myanmar 26362 T 41 41
118 Myanmar 26363 G 41 41
119 Myanmar 26364 T 41 41
120 Myanmar 26365 G 41 41
121 Myanmar 26366 C 41 41
122 Myanmar 26367 G 41 41
123 Myanmar 26368 T 41 41
124 Myanmar 26369 A 41 41
125 Myanmar 26370 C 41 41
126 Myanmar 26371 T 41 41
127 Myanmar 26372 G 41 41
128 Myanmar 26373 C 41 41
129 Myanmar 26374 T 41 41
130 Myanmar 26375 G 41 41
131 Myanmar 26376 C 41 41
132 Myanmar 26377 A 41 41
133 Myanmar 26378 A 41 41
134 Myanmar 26379 T 41 41
135 Myanmar 26380 A 41 41
136 Myanmar 26381 T 41 41
137 Myanmar 26382 T 41 41
138 Myanmar 26383 G 41 41
139 Myanmar 26384 T 41 41
140 Myanmar 26385 T 41 41
141 Myanmar 26386 A 41 41
142 Myanmar 26387 A 41 41
143 Myanmar 26388 C 41 41
144 Myanmar 26389 G 41 41
145 Myanmar 26390 T 41 41
146 Myanmar 26391 G 41 41
147 Myanmar 26392 A 41 41
148 Myanmar 26393 G 41 41
149 Myanmar 26394 T 41 41
150 Myanmar 26395 C 41 41
151 Myanmar 26396 T 41 41
152 Myanmar 26397 T 41 41
153 Myanmar 26398 G 41 41
154 Myanmar 26399 T 41 41
155 Myanmar 26400 A 41 41
156 Myanmar 26401 A 41 41
157 Myanmar 26402 A 41 41
158 Myanmar 26403 A 41 41
159 Myanmar 26404 C 41 41
160 Myanmar 26405 C 41 41
161 Myanmar 26406 T 41 41
162 Myanmar 26407 T 41 41
163 Myanmar 26408 C 41 41
164 Myanmar 26409 T 41 41
165 Myanmar 26410 T 41 41
166 Myanmar 26411 T 41 41
167 Myanmar 26412 T 41 41
168 Myanmar 26413 T 41 41
169 Myanmar 26414 A 41 41
170 Myanmar 26415 C 41 41
171 Myanmar 26416 G 41 41
172 Myanmar 26417 T 41 41
173 Myanmar 26418 T 41 41
174 Myanmar 26419 T 41 41
175 Myanmar 26420 A 41 41
176 Myanmar 26421 C 41 41
177 Myanmar 26422 T 41 41
178 Myanmar 26423 C 41 41
179 Myanmar 26424 T 41 41
180 Myanmar 26425 C 41 41
181 Myanmar 26426 G 41 41
182 Myanmar 26427 T 41 41
183 Myanmar 26428 G 41 41
184 Myanmar 26429 T 41 41
185 Myanmar 26430 T 41 41
186 Myanmar 26431 A 41 41
187 Myanmar 26432 A 41 41
188 Myanmar 26433 A 41 41
189 Myanmar 26434 A 41 41
190 Myanmar 26435 A 41 41
191 Myanmar 26436 T 41 41
192 Myanmar 26437 C 41 41
193 Myanmar 26438 T 41 41
194 Myanmar 26439 G 41 41
195 Myanmar 26440 A 41 41
196 Myanmar 26441 A 41 41
197 Myanmar 26442 T 41 41
198 Myanmar 26443 T 41 41
199 Myanmar 26444 C 41 41
200 Myanmar 26445 T 41 41
201 Myanmar 26446 T 41 41
202 Myanmar 26447 C 41 41
203 Myanmar 26448 T 41 41
204 Myanmar 26449 A 41 41
205 Myanmar 26450 G 41 41
206 Myanmar 26451 A 41 41
207 Myanmar 26452 G 41 41
208 Myanmar 26453 T 41 41
209 Myanmar 26454 T 41 41
210 Myanmar 26455 C 41 41
211 Myanmar 26456 C 41 41
212 Myanmar 26457 T 41 41
213 Myanmar 26458 G 41 41
214 Myanmar 26459 A 41 41
215 Myanmar 26460 T 41 41
216 Myanmar 26461 C 41 41
217 Myanmar 26462 T 41 41
218 Myanmar 26463 T 41 41
219 Myanmar 26464 C 41 41
220 Myanmar 26465 T 41 41
221 Myanmar 26466 G 41 41
222 Myanmar 26467 G 41 41
223 Myanmar 26468 T 41 41
224 Myanmar 26469 C 41 41
225 Myanmar 26470 T 41 41
226 Myanmar 26471 A 41 41
227 Myanmar 26472 A 41 41