National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15         1                        
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15                                  
P     6                 1                
R     9                                  
S     24                                  
T     12                                  
V     39             1                    
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Mozambique 26245 A 94 94
1 Mozambique 26246 T 94 94
2 Mozambique 26247 G 94 94
3 Mozambique 26248 T 94 94
4 Mozambique 26249 A 94 94
5 Mozambique 26250 C 94 94
6 Mozambique 26251 T 94 94
7 Mozambique 26252 C 94 94
8 Mozambique 26253 A 94 94
9 Mozambique 26254 T 94 94
10 Mozambique 26255 T 94 94
11 Mozambique 26256 C T 94 93 Phe4Phe
12 Mozambique 26257 G A 94 93 Val5Ile
13 Mozambique 26258 T 94 94
14 Mozambique 26259 T 94 94
15 Mozambique 26260 T 94 94
16 Mozambique 26261 C 94 94
17 Mozambique 26262 G 94 94
18 Mozambique 26263 G 94 94
19 Mozambique 26264 A 94 94
20 Mozambique 26265 A 94 94
21 Mozambique 26266 G 94 94
22 Mozambique 26267 A 94 94
23 Mozambique 26268 G 94 94
24 Mozambique 26269 A 94 94
25 Mozambique 26270 C 94 94
26 Mozambique 26271 A 94 94
27 Mozambique 26272 G 94 94
28 Mozambique 26273 G 94 94
29 Mozambique 26274 T 94 94
30 Mozambique 26275 A 94 94
31 Mozambique 26276 C 94 94
32 Mozambique 26277 G 94 94
33 Mozambique 26278 T 94 94
34 Mozambique 26279 T 94 94
35 Mozambique 26280 A 94 94
36 Mozambique 26281 A 94 94
37 Mozambique 26282 T 94 94
38 Mozambique 26283 A 94 94
39 Mozambique 26284 G 94 94
40 Mozambique 26285 T 94 94
41 Mozambique 26286 T 94 94
42 Mozambique 26287 A 94 94
43 Mozambique 26288 A 94 94
44 Mozambique 26289 T 94 94
45 Mozambique 26290 A 94 94
46 Mozambique 26291 G 94 94
47 Mozambique 26292 C 94 94
48 Mozambique 26293 G 94 94
49 Mozambique 26294 T 94 94
50 Mozambique 26295 A 94 94
51 Mozambique 26296 C 94 94
52 Mozambique 26297 T 94 94
53 Mozambique 26298 T 94 94
54 Mozambique 26299 C 94 94
55 Mozambique 26300 T 94 94
56 Mozambique 26301 T 94 94
57 Mozambique 26302 T 94 94
58 Mozambique 26303 T 94 94
59 Mozambique 26304 T 94 94
60 Mozambique 26305 C 94 94
61 Mozambique 26306 T 94 94
62 Mozambique 26307 T 94 94
63 Mozambique 26308 G 94 94
64 Mozambique 26309 C 94 94
65 Mozambique 26310 T 94 94
66 Mozambique 26311 T 94 94
67 Mozambique 26312 T 94 94
68 Mozambique 26313 C 94 94
69 Mozambique 26314 G 94 94
70 Mozambique 26315 T 94 94
71 Mozambique 26316 G 94 94
72 Mozambique 26317 G 94 94
73 Mozambique 26318 T 94 94
74 Mozambique 26319 A 94 94
75 Mozambique 26320 T 94 94
76 Mozambique 26321 T 94 94
77 Mozambique 26322 C 94 94
78 Mozambique 26323 T 94 94
79 Mozambique 26324 T 94 94
80 Mozambique 26325 G 94 94
81 Mozambique 26326 C 94 94
82 Mozambique 26327 T 94 94
83 Mozambique 26328 A 94 94
84 Mozambique 26329 G 94 94
85 Mozambique 26330 T 94 94
86 Mozambique 26331 T 94 94
87 Mozambique 26332 A 94 94
88 Mozambique 26333 C 94 94
89 Mozambique 26334 A 94 94
90 Mozambique 26335 C 94 94
91 Mozambique 26336 T 94 94
92 Mozambique 26337 A 94 94
93 Mozambique 26338 G 94 94
94 Mozambique 26339 C 94 94
95 Mozambique 26340 C 94 94
96 Mozambique 26341 A 94 94
97 Mozambique 26342 T 94 94
98 Mozambique 26343 C 94 94
99 Mozambique 26344 C 94 94
100 Mozambique 26345 T 94 94
101 Mozambique 26346 T 94 94
102 Mozambique 26347 A 94 94
103 Mozambique 26348 C 94 94
104 Mozambique 26349 T 94 94
105 Mozambique 26350 G 94 94
106 Mozambique 26351 C 94 94
107 Mozambique 26352 G 94 94
108 Mozambique 26353 C 94 94
109 Mozambique 26354 T 94 94
110 Mozambique 26355 T 94 94
111 Mozambique 26356 C 94 94
112 Mozambique 26357 G 94 94
113 Mozambique 26358 A 94 94
114 Mozambique 26359 T 94 94
115 Mozambique 26360 T 94 94
116 Mozambique 26361 G 94 94
117 Mozambique 26362 T 94 94
118 Mozambique 26363 G 94 94
119 Mozambique 26364 T 94 94
120 Mozambique 26365 G 94 94
121 Mozambique 26366 C 94 94
122 Mozambique 26367 G 94 94
123 Mozambique 26368 T 94 94
124 Mozambique 26369 A 94 94
125 Mozambique 26370 C 94 94
126 Mozambique 26371 T 94 94
127 Mozambique 26372 G 94 94
128 Mozambique 26373 C 94 94
129 Mozambique 26374 T 94 94
130 Mozambique 26375 G 94 94
131 Mozambique 26376 C 94 94
132 Mozambique 26377 A 94 94
133 Mozambique 26378 A 94 94
134 Mozambique 26379 T 94 94
135 Mozambique 26380 A 94 94
136 Mozambique 26381 T 94 94
137 Mozambique 26382 T 94 94
138 Mozambique 26383 G 94 94
139 Mozambique 26384 T 94 94
140 Mozambique 26385 T 94 94
141 Mozambique 26386 A 94 94
142 Mozambique 26387 A 94 94
143 Mozambique 26388 C 94 94
144 Mozambique 26389 G 94 94
145 Mozambique 26390 T 94 94
146 Mozambique 26391 G 94 94
147 Mozambique 26392 A 94 94
148 Mozambique 26393 G 94 94
149 Mozambique 26394 T 94 94
150 Mozambique 26395 C 94 94
151 Mozambique 26396 T 94 94
152 Mozambique 26397 T 94 94
153 Mozambique 26398 G 94 94
154 Mozambique 26399 T 94 94
155 Mozambique 26400 A 94 94
156 Mozambique 26401 A 94 94
157 Mozambique 26402 A 94 94
158 Mozambique 26403 A 94 94
159 Mozambique 26404 C 94 94
160 Mozambique 26405 C 94 94
161 Mozambique 26406 T 94 94
162 Mozambique 26407 T 94 94
163 Mozambique 26408 C 94 94
164 Mozambique 26409 T 94 94
165 Mozambique 26410 T 94 94
166 Mozambique 26411 T 94 94
167 Mozambique 26412 T 94 94
168 Mozambique 26413 T 94 94
169 Mozambique 26414 A 94 94
170 Mozambique 26415 C 94 94
171 Mozambique 26416 G 94 94
172 Mozambique 26417 T 94 94
173 Mozambique 26418 T 94 94
174 Mozambique 26419 T 94 94
175 Mozambique 26420 A 94 94
176 Mozambique 26421 C 94 94
177 Mozambique 26422 T 94 94
178 Mozambique 26423 C 94 94
179 Mozambique 26424 T 94 94
180 Mozambique 26425 C 94 94
181 Mozambique 26426 G 94 94
182 Mozambique 26427 T 94 94
183 Mozambique 26428 G 94 94
184 Mozambique 26429 T 94 94
185 Mozambique 26430 T 94 94
186 Mozambique 26431 A 94 94
187 Mozambique 26432 A 94 94
188 Mozambique 26433 A 94 94
189 Mozambique 26434 A 94 94
190 Mozambique 26435 A 94 94
191 Mozambique 26436 T 94 94
192 Mozambique 26437 C 94 94
193 Mozambique 26438 T 94 94
194 Mozambique 26439 G 94 94
195 Mozambique 26440 A 94 94
196 Mozambique 26441 A 94 94
197 Mozambique 26442 T 94 94
198 Mozambique 26443 T 94 94
199 Mozambique 26444 C 94 94
200 Mozambique 26445 T 94 94
201 Mozambique 26446 T 94 94
202 Mozambique 26447 C 94 94
203 Mozambique 26448 T 94 94
204 Mozambique 26449 A 94 94
205 Mozambique 26450 G 94 94
206 Mozambique 26451 A 94 94
207 Mozambique 26452 G 94 94
208 Mozambique 26453 T 94 94
209 Mozambique 26454 T 94 94
210 Mozambique 26455 C 94 94
211 Mozambique 26456 C T 94 73 Pro71Leu
212 Mozambique 26457 T 94 94
213 Mozambique 26458 G 94 94
214 Mozambique 26459 A 94 94
215 Mozambique 26460 T 94 94
216 Mozambique 26461 C 94 94
217 Mozambique 26462 T 94 94
218 Mozambique 26463 T 94 94
219 Mozambique 26464 C 94 94
220 Mozambique 26465 T 94 94
221 Mozambique 26466 G 94 94
222 Mozambique 26467 G 94 94
223 Mozambique 26468 T 94 94
224 Mozambique 26469 C 94 94
225 Mozambique 26470 T 94 94
226 Mozambique 26471 A 94 94
227 Mozambique 26472 A 94 94