National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12 1                                
C     9                         1       1
D     3                                  
E     6                                  
F     15         1                        
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15               1           1      
P     6                           1      
R     9                                  
S     24         1                        
T     12                                  
V     39           1                   1  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Morocco 26245 A 118 118
1 Morocco 26246 T 118 118
2 Morocco 26247 G 118 118
3 Morocco 26248 T 118 118
4 Morocco 26249 A 118 118
5 Morocco 26250 C 118 118
6 Morocco 26251 T 118 118
7 Morocco 26252 C 118 118
8 Morocco 26253 A 118 118
9 Morocco 26254 T 118 118
10 Morocco 26255 T 118 118
11 Morocco 26256 C 118 118
12 Morocco 26257 G 118 118
13 Morocco 26258 T 118 118
14 Morocco 26259 T 118 118
15 Morocco 26260 T 118 118
16 Morocco 26261 C 118 118
17 Morocco 26262 G 118 118
18 Morocco 26263 G 118 118
19 Morocco 26264 A 118 118
20 Morocco 26265 A 118 118
21 Morocco 26266 G 118 118
22 Morocco 26267 A 118 118
23 Morocco 26268 G 118 118
24 Morocco 26269 A 118 118
25 Morocco 26270 C 118 118
26 Morocco 26271 A 118 118
27 Morocco 26272 G 118 118
28 Morocco 26273 G 118 118
29 Morocco 26274 T 118 118
30 Morocco 26275 A 118 118
31 Morocco 26276 C 118 118
32 Morocco 26277 G 118 118
33 Morocco 26278 T 118 118
34 Morocco 26279 T 118 118
35 Morocco 26280 A 118 118
36 Morocco 26281 A 118 118
37 Morocco 26282 T 118 118
38 Morocco 26283 A 118 118
39 Morocco 26284 G 118 118
40 Morocco 26285 T 118 118
41 Morocco 26286 T 118 118
42 Morocco 26287 A 118 118
43 Morocco 26288 A 118 118
44 Morocco 26289 T 118 118
45 Morocco 26290 A 118 118
46 Morocco 26291 G 118 118
47 Morocco 26292 C 118 118
48 Morocco 26293 G 118 118
49 Morocco 26294 T 118 118
50 Morocco 26295 A 118 118
51 Morocco 26296 C 118 118
52 Morocco 26297 T 118 118
53 Morocco 26298 T 118 118
54 Morocco 26299 C 118 118
55 Morocco 26300 T 118 118
56 Morocco 26301 T 118 118
57 Morocco 26302 T 118 118
58 Morocco 26303 T 118 118
59 Morocco 26304 T 118 118
60 Morocco 26305 C 118 118
61 Morocco 26306 T 118 118
62 Morocco 26307 T 118 118
63 Morocco 26308 G 118 118
64 Morocco 26309 C 118 118
65 Morocco 26310 T 118 118
66 Morocco 26311 T 118 118
67 Morocco 26312 T 118 118
68 Morocco 26313 C T 118 117 Phe23Phe
69 Morocco 26314 G 118 118
70 Morocco 26315 T 118 118
71 Morocco 26316 G 118 118
72 Morocco 26317 G 118 118
73 Morocco 26318 T 118 118
74 Morocco 26319 A 118 118
75 Morocco 26320 T 118 118
76 Morocco 26321 T 118 118
77 Morocco 26322 C 118 118
78 Morocco 26323 T 118 118
79 Morocco 26324 T 118 118
80 Morocco 26325 G 118 118
81 Morocco 26326 C 118 118
82 Morocco 26327 T 118 118
83 Morocco 26328 A 118 118
84 Morocco 26329 G 118 118
85 Morocco 26330 T 118 118
86 Morocco 26331 T 118 118
87 Morocco 26332 A 118 118
88 Morocco 26333 C 118 118
89 Morocco 26334 A 118 118
90 Morocco 26335 C 118 118
91 Morocco 26336 T 118 118
92 Morocco 26337 A 118 118
93 Morocco 26338 G 118 118
94 Morocco 26339 C 118 118
95 Morocco 26340 C 118 118
96 Morocco 26341 A 118 118
97 Morocco 26342 T 118 118
98 Morocco 26343 C 118 118
99 Morocco 26344 C 118 118
100 Morocco 26345 T 118 118
101 Morocco 26346 T 118 118
102 Morocco 26347 A 118 118
103 Morocco 26348 C 118 118
104 Morocco 26349 T 118 118
105 Morocco 26350 G 118 118
106 Morocco 26351 C 118 118
107 Morocco 26352 G 118 118
108 Morocco 26353 C 118 118
109 Morocco 26354 T 118 118
110 Morocco 26355 T 118 118
111 Morocco 26356 C 118 118
112 Morocco 26357 G 118 118
113 Morocco 26358 A 118 118
114 Morocco 26359 T 118 118
115 Morocco 26360 T 118 118
116 Morocco 26361 G 118 118
117 Morocco 26362 T 118 118
118 Morocco 26363 G 118 118
119 Morocco 26364 T 118 118
120 Morocco 26365 G 118 118
121 Morocco 26366 C 118 118
122 Morocco 26367 G A 118 117 Ala41Ala
123 Morocco 26368 T 118 118
124 Morocco 26369 A 118 118
125 Morocco 26370 C 118 118
126 Morocco 26371 T C 118 117 Cys43Arg
127 Morocco 26372 G 118 118
128 Morocco 26373 C 118 118
129 Morocco 26374 T 118 118
130 Morocco 26375 G A 118 117 Cys44Tyr
131 Morocco 26376 C 118 118
132 Morocco 26377 A 118 118
133 Morocco 26378 A G 118 117 Asn45Ser
134 Morocco 26379 T G 118 117 Asn45Lys
135 Morocco 26380 A 118 118
136 Morocco 26381 T 118 118
137 Morocco 26382 T 118 118
138 Morocco 26383 G 118 118
139 Morocco 26384 T G 118 117 Val47Gly
140 Morocco 26385 T C 118 117 Val47Val
141 Morocco 26386 A 118 118
142 Morocco 26387 A 118 118
143 Morocco 26388 C 118 118
144 Morocco 26389 G 118 118
145 Morocco 26390 T 118 118
146 Morocco 26391 G 118 118
147 Morocco 26392 A 118 118
148 Morocco 26393 G 118 118
149 Morocco 26394 T 118 118
150 Morocco 26395 C 118 118
151 Morocco 26396 T 118 118
152 Morocco 26397 T 118 118
153 Morocco 26398 G 118 118
154 Morocco 26399 T 118 118
155 Morocco 26400 A 118 118
156 Morocco 26401 A 118 118
157 Morocco 26402 A 118 118
158 Morocco 26403 A 118 118
159 Morocco 26404 C 118 118
160 Morocco 26405 C 118 118
161 Morocco 26406 T 118 118
162 Morocco 26407 T 118 118
163 Morocco 26408 C 118 118
164 Morocco 26409 T 118 118
165 Morocco 26410 T 118 118
166 Morocco 26411 T 118 118
167 Morocco 26412 T 118 118
168 Morocco 26413 T 118 118
169 Morocco 26414 A 118 118
170 Morocco 26415 C 118 118
171 Morocco 26416 G 118 118
172 Morocco 26417 T 118 118
173 Morocco 26418 T 118 118
174 Morocco 26419 T 118 118
175 Morocco 26420 A 118 118
176 Morocco 26421 C 118 118
177 Morocco 26422 T 118 118
178 Morocco 26423 C 118 118
179 Morocco 26424 T 118 118
180 Morocco 26425 C 118 118
181 Morocco 26426 G 118 118
182 Morocco 26427 T 118 118
183 Morocco 26428 G 118 118
184 Morocco 26429 T 118 118
185 Morocco 26430 T 118 118
186 Morocco 26431 A 118 118
187 Morocco 26432 A 118 118
188 Morocco 26433 A 118 118
189 Morocco 26434 A 118 118
190 Morocco 26435 A 118 118
191 Morocco 26436 T 118 118
192 Morocco 26437 C 118 118
193 Morocco 26438 T 118 118
194 Morocco 26439 G 118 118
195 Morocco 26440 A 118 118
196 Morocco 26441 A 118 118
197 Morocco 26442 T 118 118
198 Morocco 26443 T 118 118
199 Morocco 26444 C 118 118
200 Morocco 26445 T 118 118
201 Morocco 26446 T 118 118
202 Morocco 26447 C T 118 117 Ser68Phe
203 Morocco 26448 T 118 118
204 Morocco 26449 A 118 118
205 Morocco 26450 G 118 118
206 Morocco 26451 A 118 118
207 Morocco 26452 G 118 118
208 Morocco 26453 T 118 118
209 Morocco 26454 T 118 118
210 Morocco 26455 C T 118 117 Pro71Ser
211 Morocco 26456 C 118 118
212 Morocco 26457 T 118 118
213 Morocco 26458 G 118 118
214 Morocco 26459 A 118 118
215 Morocco 26460 T 118 118
216 Morocco 26461 C 118 118
217 Morocco 26462 T 118 118
218 Morocco 26463 T 118 118
219 Morocco 26464 C 118 118
220 Morocco 26465 T 118 118
221 Morocco 26466 G 118 118
222 Morocco 26467 G 118 118
223 Morocco 26468 T 118 118
224 Morocco 26469 C 118 118
225 Morocco 26470 T 118 118
226 Morocco 26471 A 118 118
227 Morocco 26472 A 118 118