National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24                                  
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Montenegro 26245 A 12 12
1 Montenegro 26246 T 12 12
2 Montenegro 26247 G 12 12
3 Montenegro 26248 T 12 12
4 Montenegro 26249 A 12 12
5 Montenegro 26250 C 12 12
6 Montenegro 26251 T 12 12
7 Montenegro 26252 C 12 12
8 Montenegro 26253 A 12 12
9 Montenegro 26254 T 12 12
10 Montenegro 26255 T 12 12
11 Montenegro 26256 C 12 12
12 Montenegro 26257 G 12 12
13 Montenegro 26258 T 12 12
14 Montenegro 26259 T 12 12
15 Montenegro 26260 T 12 12
16 Montenegro 26261 C 12 12
17 Montenegro 26262 G 12 12
18 Montenegro 26263 G 12 12
19 Montenegro 26264 A 12 12
20 Montenegro 26265 A 12 12
21 Montenegro 26266 G 12 12
22 Montenegro 26267 A 12 12
23 Montenegro 26268 G 12 12
24 Montenegro 26269 A 12 12
25 Montenegro 26270 C 12 12
26 Montenegro 26271 A 12 12
27 Montenegro 26272 G 12 12
28 Montenegro 26273 G 12 12
29 Montenegro 26274 T 12 12
30 Montenegro 26275 A 12 12
31 Montenegro 26276 C 12 12
32 Montenegro 26277 G 12 12
33 Montenegro 26278 T 12 12
34 Montenegro 26279 T 12 12
35 Montenegro 26280 A 12 12
36 Montenegro 26281 A 12 12
37 Montenegro 26282 T 12 12
38 Montenegro 26283 A 12 12
39 Montenegro 26284 G 12 12
40 Montenegro 26285 T 12 12
41 Montenegro 26286 T 12 12
42 Montenegro 26287 A 12 12
43 Montenegro 26288 A 12 12
44 Montenegro 26289 T 12 12
45 Montenegro 26290 A 12 12
46 Montenegro 26291 G 12 12
47 Montenegro 26292 C 12 12
48 Montenegro 26293 G 12 12
49 Montenegro 26294 T 12 12
50 Montenegro 26295 A 12 12
51 Montenegro 26296 C 12 12
52 Montenegro 26297 T 12 12
53 Montenegro 26298 T 12 12
54 Montenegro 26299 C 12 12
55 Montenegro 26300 T 12 12
56 Montenegro 26301 T 12 12
57 Montenegro 26302 T 12 12
58 Montenegro 26303 T 12 12
59 Montenegro 26304 T 12 12
60 Montenegro 26305 C 12 12
61 Montenegro 26306 T 12 12
62 Montenegro 26307 T 12 12
63 Montenegro 26308 G 12 12
64 Montenegro 26309 C 12 12
65 Montenegro 26310 T 12 12
66 Montenegro 26311 T 12 12
67 Montenegro 26312 T 12 12
68 Montenegro 26313 C 12 12
69 Montenegro 26314 G 12 12
70 Montenegro 26315 T 12 12
71 Montenegro 26316 G 12 12
72 Montenegro 26317 G 12 12
73 Montenegro 26318 T 12 12
74 Montenegro 26319 A 12 12
75 Montenegro 26320 T 12 12
76 Montenegro 26321 T 12 12
77 Montenegro 26322 C 12 12
78 Montenegro 26323 T 12 12
79 Montenegro 26324 T 12 12
80 Montenegro 26325 G 12 12
81 Montenegro 26326 C 12 12
82 Montenegro 26327 T 12 12
83 Montenegro 26328 A 12 12
84 Montenegro 26329 G 12 12
85 Montenegro 26330 T 12 12
86 Montenegro 26331 T 12 12
87 Montenegro 26332 A 12 12
88 Montenegro 26333 C 12 12
89 Montenegro 26334 A 12 12
90 Montenegro 26335 C 12 12
91 Montenegro 26336 T 12 12
92 Montenegro 26337 A 12 12
93 Montenegro 26338 G 12 12
94 Montenegro 26339 C 12 12
95 Montenegro 26340 C 12 12
96 Montenegro 26341 A 12 12
97 Montenegro 26342 T 12 12
98 Montenegro 26343 C 12 12
99 Montenegro 26344 C 12 12
100 Montenegro 26345 T 12 12
101 Montenegro 26346 T 12 12
102 Montenegro 26347 A 12 12
103 Montenegro 26348 C 12 12
104 Montenegro 26349 T 12 12
105 Montenegro 26350 G 12 12
106 Montenegro 26351 C 12 12
107 Montenegro 26352 G 12 12
108 Montenegro 26353 C 12 12
109 Montenegro 26354 T 12 12
110 Montenegro 26355 T 12 12
111 Montenegro 26356 C 12 12
112 Montenegro 26357 G 12 12
113 Montenegro 26358 A 12 12
114 Montenegro 26359 T 12 12
115 Montenegro 26360 T 12 12
116 Montenegro 26361 G 12 12
117 Montenegro 26362 T 12 12
118 Montenegro 26363 G 12 12
119 Montenegro 26364 T 12 12
120 Montenegro 26365 G 12 12
121 Montenegro 26366 C 12 12
122 Montenegro 26367 G 12 12
123 Montenegro 26368 T 12 12
124 Montenegro 26369 A 12 12
125 Montenegro 26370 C 12 12
126 Montenegro 26371 T 12 12
127 Montenegro 26372 G 12 12
128 Montenegro 26373 C 12 12
129 Montenegro 26374 T 12 12
130 Montenegro 26375 G 12 12
131 Montenegro 26376 C 12 12
132 Montenegro 26377 A 12 12
133 Montenegro 26378 A 12 12
134 Montenegro 26379 T 12 12
135 Montenegro 26380 A 12 12
136 Montenegro 26381 T 12 12
137 Montenegro 26382 T 12 12
138 Montenegro 26383 G 12 12
139 Montenegro 26384 T 12 12
140 Montenegro 26385 T 12 12
141 Montenegro 26386 A 12 12
142 Montenegro 26387 A 12 12
143 Montenegro 26388 C 12 12
144 Montenegro 26389 G 12 12
145 Montenegro 26390 T 12 12
146 Montenegro 26391 G 12 12
147 Montenegro 26392 A 12 12
148 Montenegro 26393 G 12 12
149 Montenegro 26394 T 12 12
150 Montenegro 26395 C 12 12
151 Montenegro 26396 T 12 12
152 Montenegro 26397 T 12 12
153 Montenegro 26398 G 12 12
154 Montenegro 26399 T 12 12
155 Montenegro 26400 A 12 12
156 Montenegro 26401 A 12 12
157 Montenegro 26402 A 12 12
158 Montenegro 26403 A 12 12
159 Montenegro 26404 C 12 12
160 Montenegro 26405 C 12 12
161 Montenegro 26406 T 12 12
162 Montenegro 26407 T 12 12
163 Montenegro 26408 C 12 12
164 Montenegro 26409 T 12 12
165 Montenegro 26410 T 12 12
166 Montenegro 26411 T 12 12
167 Montenegro 26412 T 12 12
168 Montenegro 26413 T 12 12
169 Montenegro 26414 A 12 12
170 Montenegro 26415 C 12 12
171 Montenegro 26416 G 12 12
172 Montenegro 26417 T 12 12
173 Montenegro 26418 T 12 12
174 Montenegro 26419 T 12 12
175 Montenegro 26420 A 12 12
176 Montenegro 26421 C 12 12
177 Montenegro 26422 T 12 12
178 Montenegro 26423 C 12 12
179 Montenegro 26424 T 12 12
180 Montenegro 26425 C 12 12
181 Montenegro 26426 G 12 12
182 Montenegro 26427 T 12 12
183 Montenegro 26428 G 12 12
184 Montenegro 26429 T 12 12
185 Montenegro 26430 T 12 12
186 Montenegro 26431 A 12 12
187 Montenegro 26432 A 12 12
188 Montenegro 26433 A 12 12
189 Montenegro 26434 A 12 12
190 Montenegro 26435 A 12 12
191 Montenegro 26436 T 12 12
192 Montenegro 26437 C 12 12
193 Montenegro 26438 T 12 12
194 Montenegro 26439 G 12 12
195 Montenegro 26440 A 12 12
196 Montenegro 26441 A 12 12
197 Montenegro 26442 T 12 12
198 Montenegro 26443 T 12 12
199 Montenegro 26444 C 12 12
200 Montenegro 26445 T 12 12
201 Montenegro 26446 T 12 12
202 Montenegro 26447 C 12 12
203 Montenegro 26448 T 12 12
204 Montenegro 26449 A 12 12
205 Montenegro 26450 G 12 12
206 Montenegro 26451 A 12 12
207 Montenegro 26452 G 12 12
208 Montenegro 26453 T 12 12
209 Montenegro 26454 T 12 12
210 Montenegro 26455 C 12 12
211 Montenegro 26456 C 12 12
212 Montenegro 26457 T 12 12
213 Montenegro 26458 G 12 12
214 Montenegro 26459 A 12 12
215 Montenegro 26460 T 12 12
216 Montenegro 26461 C 12 12
217 Montenegro 26462 T 12 12
218 Montenegro 26463 T 12 12
219 Montenegro 26464 C 12 12
220 Montenegro 26465 T 12 12
221 Montenegro 26466 G 12 12
222 Montenegro 26467 G 12 12
223 Montenegro 26468 T 12 12
224 Montenegro 26469 C 12 12
225 Montenegro 26470 T 12 12
226 Montenegro 26471 A 12 12
227 Montenegro 26472 A 12 12