National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P R S T V Y
*     2                                  
-     228                                  
?                                        
A     12                                  
C     9                                  
D     3                                  
E     6                                  
F     15                                  
G     3                                  
I     9                                  
K     6                                  
L     43                                  
M     3                                  
N     15                                  
P     6                                  
R     9                                  
S     24                                  
T     12                                  
V     39                                  
Y     12                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Mongolia 26245 A 7 7
1 Mongolia 26246 T 7 7
2 Mongolia 26247 G 7 7
3 Mongolia 26248 T 7 7
4 Mongolia 26249 A 7 7
5 Mongolia 26250 C 7 7
6 Mongolia 26251 T 7 7
7 Mongolia 26252 C 7 7
8 Mongolia 26253 A 7 7
9 Mongolia 26254 T 7 7
10 Mongolia 26255 T 7 7
11 Mongolia 26256 C 7 7
12 Mongolia 26257 G 7 7
13 Mongolia 26258 T 7 7
14 Mongolia 26259 T 7 7
15 Mongolia 26260 T 7 7
16 Mongolia 26261 C 7 7
17 Mongolia 26262 G 7 7
18 Mongolia 26263 G 7 7
19 Mongolia 26264 A 7 7
20 Mongolia 26265 A 7 7
21 Mongolia 26266 G 7 7
22 Mongolia 26267 A 7 7
23 Mongolia 26268 G 7 7
24 Mongolia 26269 A 7 7
25 Mongolia 26270 C 7 7
26 Mongolia 26271 A 7 7
27 Mongolia 26272 G 7 7
28 Mongolia 26273 G 7 7
29 Mongolia 26274 T 7 7
30 Mongolia 26275 A 7 7
31 Mongolia 26276 C 7 7
32 Mongolia 26277 G 7 7
33 Mongolia 26278 T 7 7
34 Mongolia 26279 T 7 7
35 Mongolia 26280 A 7 7
36 Mongolia 26281 A 7 7
37 Mongolia 26282 T 7 7
38 Mongolia 26283 A 7 7
39 Mongolia 26284 G 7 7
40 Mongolia 26285 T 7 7
41 Mongolia 26286 T 7 7
42 Mongolia 26287 A 7 7
43 Mongolia 26288 A 7 7
44 Mongolia 26289 T 7 7
45 Mongolia 26290 A 7 7
46 Mongolia 26291 G 7 7
47 Mongolia 26292 C 7 7
48 Mongolia 26293 G 7 7
49 Mongolia 26294 T 7 7
50 Mongolia 26295 A 7 7
51 Mongolia 26296 C 7 7
52 Mongolia 26297 T 7 7
53 Mongolia 26298 T 7 7
54 Mongolia 26299 C 7 7
55 Mongolia 26300 T 7 7
56 Mongolia 26301 T 7 7
57 Mongolia 26302 T 7 7
58 Mongolia 26303 T 7 7
59 Mongolia 26304 T 7 7
60 Mongolia 26305 C 7 7
61 Mongolia 26306 T 7 7
62 Mongolia 26307 T 7 7
63 Mongolia 26308 G 7 7
64 Mongolia 26309 C 7 7
65 Mongolia 26310 T 7 7
66 Mongolia 26311 T 7 7
67 Mongolia 26312 T 7 7
68 Mongolia 26313 C 7 7
69 Mongolia 26314 G 7 7
70 Mongolia 26315 T 7 7
71 Mongolia 26316 G 7 7
72 Mongolia 26317 G 7 7
73 Mongolia 26318 T 7 7
74 Mongolia 26319 A 7 7
75 Mongolia 26320 T 7 7
76 Mongolia 26321 T 7 7
77 Mongolia 26322 C 7 7
78 Mongolia 26323 T 7 7
79 Mongolia 26324 T 7 7
80 Mongolia 26325 G 7 7
81 Mongolia 26326 C 7 7
82 Mongolia 26327 T 7 7
83 Mongolia 26328 A 7 7
84 Mongolia 26329 G 7 7
85 Mongolia 26330 T 7 7
86 Mongolia 26331 T 7 7
87 Mongolia 26332 A 7 7
88 Mongolia 26333 C 7 7
89 Mongolia 26334 A 7 7
90 Mongolia 26335 C 7 7
91 Mongolia 26336 T 7 7
92 Mongolia 26337 A 7 7
93 Mongolia 26338 G 7 7
94 Mongolia 26339 C 7 7
95 Mongolia 26340 C 7 7
96 Mongolia 26341 A 7 7
97 Mongolia 26342 T 7 7
98 Mongolia 26343 C 7 7
99 Mongolia 26344 C 7 7
100 Mongolia 26345 T 7 7
101 Mongolia 26346 T 7 7
102 Mongolia 26347 A 7 7
103 Mongolia 26348 C 7 7
104 Mongolia 26349 T 7 7
105 Mongolia 26350 G 7 7
106 Mongolia 26351 C 7 7
107 Mongolia 26352 G 7 7
108 Mongolia 26353 C 7 7
109 Mongolia 26354 T 7 7
110 Mongolia 26355 T 7 7
111 Mongolia 26356 C 7 7
112 Mongolia 26357 G 7 7
113 Mongolia 26358 A 7 7
114 Mongolia 26359 T 7 7
115 Mongolia 26360 T 7 7
116 Mongolia 26361 G 7 7
117 Mongolia 26362 T 7 7
118 Mongolia 26363 G 7 7
119 Mongolia 26364 T 7 7
120 Mongolia 26365 G 7 7
121 Mongolia 26366 C 7 7
122 Mongolia 26367 G 7 7
123 Mongolia 26368 T 7 7
124 Mongolia 26369 A 7 7
125 Mongolia 26370 C 7 7
126 Mongolia 26371 T 7 7
127 Mongolia 26372 G 7 7
128 Mongolia 26373 C 7 7
129 Mongolia 26374 T 7 7
130 Mongolia 26375 G 7 7
131 Mongolia 26376 C 7 7
132 Mongolia 26377 A 7 7
133 Mongolia 26378 A 7 7
134 Mongolia 26379 T 7 7
135 Mongolia 26380 A 7 7
136 Mongolia 26381 T 7 7
137 Mongolia 26382 T 7 7
138 Mongolia 26383 G 7 7
139 Mongolia 26384 T 7 7
140 Mongolia 26385 T 7 7
141 Mongolia 26386 A 7 7
142 Mongolia 26387 A 7 7
143 Mongolia 26388 C 7 7
144 Mongolia 26389 G 7 7
145 Mongolia 26390 T 7 7
146 Mongolia 26391 G 7 7
147 Mongolia 26392 A 7 7
148 Mongolia 26393 G 7 7
149 Mongolia 26394 T 7 7
150 Mongolia 26395 C 7 7
151 Mongolia 26396 T 7 7
152 Mongolia 26397 T 7 7
153 Mongolia 26398 G 7 7
154 Mongolia 26399 T 7 7
155 Mongolia 26400 A 7 7
156 Mongolia 26401 A 7 7
157 Mongolia 26402 A 7 7
158 Mongolia 26403 A 7 7
159 Mongolia 26404 C 7 7
160 Mongolia 26405 C 7 7
161 Mongolia 26406 T 7 7
162 Mongolia 26407 T 7 7
163 Mongolia 26408 C 7 7
164 Mongolia 26409 T 7 7
165 Mongolia 26410 T 7 7
166 Mongolia 26411 T 7 7
167 Mongolia 26412 T 7 7
168 Mongolia 26413 T 7 7
169 Mongolia 26414 A 7 7
170 Mongolia 26415 C 7 7
171 Mongolia 26416 G 7 7
172 Mongolia 26417 T 7 7
173 Mongolia 26418 T 7 7
174 Mongolia 26419 T 7 7
175 Mongolia 26420 A 7 7
176 Mongolia 26421 C 7 7
177 Mongolia 26422 T 7 7
178 Mongolia 26423 C 7 7
179 Mongolia 26424 T 7 7
180 Mongolia 26425 C 7 7
181 Mongolia 26426 G 7 7
182 Mongolia 26427 T 7 7
183 Mongolia 26428 G 7 7
184 Mongolia 26429 T 7 7
185 Mongolia 26430 T 7 7
186 Mongolia 26431 A 7 7
187 Mongolia 26432 A 7 7
188 Mongolia 26433 A 7 7
189 Mongolia 26434 A 7 7
190 Mongolia 26435 A 7 7
191 Mongolia 26436 T 7 7
192 Mongolia 26437 C 7 7
193 Mongolia 26438 T 7 7
194 Mongolia 26439 G 7 7
195 Mongolia 26440 A 7 7
196 Mongolia 26441 A 7 7
197 Mongolia 26442 T 7 7
198 Mongolia 26443 T 7 7
199 Mongolia 26444 C 7 7
200 Mongolia 26445 T 7 7
201 Mongolia 26446 T 7 7
202 Mongolia 26447 C 7 7
203 Mongolia 26448 T 7 7
204 Mongolia 26449 A 7 7
205 Mongolia 26450 G 7 7
206 Mongolia 26451 A 7 7
207 Mongolia 26452 G 7 7
208 Mongolia 26453 T 7 7
209 Mongolia 26454 T 7 7
210 Mongolia 26455 C 7 7
211 Mongolia 26456 C 7 7
212 Mongolia 26457 T 7 7
213 Mongolia 26458 G 7 7
214 Mongolia 26459 A 7 7
215 Mongolia 26460 T 7 7
216 Mongolia 26461 C 7 7
217 Mongolia 26462 T 7 7
218 Mongolia 26463 T 7 7
219 Mongolia 26464 C 7 7
220 Mongolia 26465 T 7 7
221 Mongolia 26466 G 7 7
222 Mongolia 26467 G 7 7
223 Mongolia 26468 T 7 7
224 Mongolia 26469 C 7 7
225 Mongolia 26470 T 7 7
226 Mongolia 26471 A 7 7
227 Mongolia 26472 A 7 7